Wall clock time and date at job start Tue Mar 31 2020 13:26:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.34686 * 125.66967 * 2 1 4 4 C 1.40987 * 107.02579 * 179.74258 * 3 2 1 5 5 C 1.35887 * 106.74132 * 0.40962 * 4 3 2 6 6 C 1.47907 * 125.92653 * 179.85221 * 5 4 3 7 7 C 1.40850 * 126.23277 * 179.97438 * 6 5 4 8 8 C 1.38213 * 105.28441 * 180.12673 * 7 6 5 9 9 C 1.47056 * 126.75666 * 179.91779 * 8 7 6 10 10 O 1.21543 * 120.00023 * 359.71468 * 9 8 7 11 11 O 1.34806 * 120.00018 * 179.71255 * 9 8 7 12 12 C 1.45200 * 117.00151 * 180.02562 * 11 9 8 13 13 C 1.53006 * 109.47003 * 180.02562 * 12 11 9 14 14 C 1.52997 * 109.47127 * 299.99754 * 13 12 11 15 15 C 1.52997 * 109.47164 * 59.99917 * 13 12 11 16 16 C 1.50699 * 109.46866 * 179.97438 * 13 12 11 17 17 H 1.08003 * 119.99963 * 359.97438 * 16 13 12 18 18 C 1.37874 * 120.00270 * 179.97438 * 16 13 12 19 19 N 1.31522 * 119.99835 * 0.02562 * 18 16 13 20 20 Si 1.86793 * 120.00496 * 179.97438 * 18 16 13 21 21 H 1.48505 * 109.47183 * 60.00274 * 20 18 16 22 22 H 1.48496 * 109.47425 * 180.02562 * 20 18 16 23 23 H 1.48503 * 109.47216 * 300.00267 * 20 18 16 24 24 N 1.36725 * 106.48313 * 359.66082 * 8 7 6 25 25 H 0.97008 * 125.03775 * 180.26065 * 24 8 7 26 26 N 1.28416 * 109.91900 * 0.21959 * 24 8 7 27 27 O 1.34342 * 125.66822 * 179.97438 * 2 1 3 28 28 H 1.09000 * 109.47021 * 179.97438 * 1 2 3 29 29 H 1.08997 * 109.47190 * 299.97781 * 1 2 3 30 30 H 1.08997 * 109.46754 * 59.97732 * 1 2 3 31 31 H 1.08002 * 126.49027 * 0.03345 * 3 2 1 32 32 H 1.07996 * 126.63378 * 180.29603 * 4 3 2 33 33 H 1.08004 * 127.36080 * 0.05304 * 7 6 5 34 34 H 1.08993 * 109.47475 * 60.00230 * 12 11 9 35 35 H 1.09000 * 109.47147 * 300.00023 * 12 11 9 36 36 H 1.09001 * 109.46832 * 60.00321 * 14 13 12 37 37 H 1.09002 * 109.47153 * 180.02562 * 14 13 12 38 38 H 1.08996 * 109.46952 * 300.00302 * 14 13 12 39 39 H 1.09000 * 109.47140 * 60.00051 * 15 13 12 40 40 H 1.09001 * 109.47230 * 179.97438 * 15 13 12 41 41 H 1.09001 * 109.47375 * 300.00034 * 15 13 12 42 42 H 0.96992 * 120.00038 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2924 1.0942 0.0000 4 6 3.6283 0.6435 0.0061 5 6 3.5832 -0.7146 0.0001 6 6 4.7515 -1.6217 0.0002 7 6 4.7123 -3.0297 -0.0054 8 6 6.0348 -3.4310 0.0001 9 6 6.5348 -4.8140 -0.0009 10 8 5.7516 -5.7434 -0.0017 11 8 7.8619 -5.0509 -0.0008 12 6 8.2835 -6.4404 -0.0024 13 6 9.8120 -6.5096 -0.0014 14 6 10.3549 -5.8105 -1.2494 15 6 10.3532 -5.8138 1.2490 16 6 10.2495 -7.9516 -0.0024 17 1 9.5112 -8.7399 -0.0032 18 6 11.5922 -8.2648 -0.0024 19 7 12.4912 -7.3048 -0.0009 20 14 12.1345 -10.0522 -0.0028 21 1 11.6086 -10.7288 -1.2157 22 1 13.6180 -10.1195 -0.0021 23 1 11.6082 -10.7296 1.2094 24 7 6.7867 -2.2891 0.0007 25 1 7.7564 -2.2608 0.0005 26 7 6.0190 -1.2597 0.0007 27 8 2.2904 -1.0914 0.0005 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5135 0.8902 30 1 -0.3633 0.5142 -0.8898 31 1 1.9615 2.1223 0.0005 32 1 4.5159 1.2586 0.0122 33 1 3.8359 -3.6609 -0.0113 34 1 7.8976 -6.9362 -0.8930 35 1 7.8970 -6.9383 0.8869 36 1 10.0384 -4.7675 -1.2482 37 1 11.4438 -5.8602 -1.2490 38 1 9.9692 -6.3063 -2.1402 39 1 9.9664 -6.3118 2.1381 40 1 11.4421 -5.8634 1.2499 41 1 10.0368 -4.7707 1.2502 42 1 13.4358 -7.5250 -0.0013 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000184803651.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:26:12 Heat of formation + Delta-G solvation = -21.649413 kcal Electronic energy + Delta-G solvation = -25479.502186 eV Core-core repulsion = 21620.384671 eV Total energy + Delta-G solvation = -3859.117515 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -43.93303 -43.35931 -41.32595 -38.38784 -36.72397 -34.32275 -34.13057 -33.31542 -32.41706 -31.86606 -27.91004 -27.58698 -27.51215 -27.19362 -25.11755 -23.38186 -22.73181 -21.82711 -21.09366 -20.77811 -20.19454 -18.08176 -17.81215 -17.74067 -17.69289 -17.28196 -16.96260 -16.44964 -16.42257 -15.51520 -15.02969 -14.97061 -14.76050 -14.73726 -13.99455 -13.86293 -13.79213 -13.72729 -13.64636 -13.38277 -13.17760 -12.85471 -12.71665 -12.67483 -12.37296 -12.35143 -12.14673 -11.88070 -11.79541 -11.44537 -11.33293 -11.27172 -10.76629 -10.70720 -10.56659 -10.40774 -8.98704 -8.05805 -6.23482 -0.25093 0.14650 1.22208 1.35199 1.40542 1.44497 1.46911 1.53315 1.63515 1.97858 1.99933 2.44146 3.18101 3.27744 3.48675 3.59703 3.95343 4.02889 4.09765 4.21420 4.24278 4.34197 4.57967 4.61393 4.78529 4.80270 4.81462 4.87100 4.98609 5.03226 5.09520 5.14685 5.20008 5.23922 5.25371 5.44989 5.58890 5.62329 5.63593 5.67519 6.07258 6.12970 6.15558 6.34870 6.44327 6.61596 6.80788 7.44496 8.93405 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.041322 B = 0.002184 C = 0.002105 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 677.438866 B =12818.103982 C =13299.179375 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 C -0.005 4.005 3 C -0.220 4.220 4 C -0.166 4.166 5 C 0.028 3.972 6 C 0.087 3.913 7 C -0.130 4.130 8 C -0.015 4.015 9 C 0.536 3.464 10 O -0.519 6.519 11 O -0.346 6.346 12 C 0.097 3.903 13 C 0.061 3.939 14 C -0.121 4.121 15 C -0.121 4.121 16 C -0.533 4.533 17 H 0.051 0.949 18 C 0.028 3.972 19 N -0.898 5.898 20 Si 0.951 3.049 21 H -0.275 1.275 22 H -0.283 1.283 23 H -0.275 1.275 24 N -0.338 5.338 25 H 0.469 0.531 26 N -0.233 5.233 27 O -0.182 6.182 28 H 0.078 0.922 29 H 0.106 0.894 30 H 0.106 0.894 31 H 0.179 0.821 32 H 0.162 0.838 33 H 0.180 0.820 34 H 0.057 0.943 35 H 0.057 0.943 36 H 0.035 0.965 37 H 0.063 0.937 38 H 0.020 0.980 39 H 0.020 0.980 40 H 0.063 0.937 41 H 0.035 0.965 42 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.237 17.319 -0.002 25.885 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.056 4.056 3 C -0.238 4.238 4 C -0.187 4.187 5 C -0.023 4.023 6 C -0.067 4.067 7 C -0.158 4.158 8 C -0.142 4.142 9 C 0.379 3.621 10 O -0.407 6.407 11 O -0.261 6.261 12 C 0.024 3.976 13 C 0.061 3.939 14 C -0.178 4.178 15 C -0.178 4.178 16 C -0.571 4.571 17 H 0.069 0.931 18 C -0.172 4.172 19 N -0.536 5.536 20 Si 0.777 3.223 21 H -0.200 1.200 22 H -0.209 1.209 23 H -0.201 1.201 24 N -0.059 5.059 25 H 0.319 0.681 26 N -0.071 5.071 27 O -0.079 6.079 28 H 0.097 0.903 29 H 0.125 0.875 30 H 0.125 0.875 31 H 0.196 0.804 32 H 0.180 0.820 33 H 0.197 0.803 34 H 0.076 0.924 35 H 0.076 0.924 36 H 0.054 0.946 37 H 0.082 0.918 38 H 0.039 0.961 39 H 0.039 0.961 40 H 0.082 0.918 41 H 0.054 0.946 42 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -18.620 17.584 0.001 25.610 hybrid contribution 0.768 -1.967 0.000 2.112 sum -17.852 15.616 0.001 23.719 Atomic orbital electron populations 1.20571 0.81936 1.05008 1.05540 1.23427 0.95565 0.83282 1.03297 1.21859 0.91540 1.00917 1.09507 1.22062 0.99677 0.92554 1.04387 1.18534 0.80605 0.91547 1.11566 1.18782 0.89054 0.90402 1.08438 1.22341 0.95611 0.94268 1.03624 1.20423 0.92203 0.85790 1.15745 1.19881 0.81667 0.87531 0.72984 1.90869 1.58031 1.44859 1.46901 1.86537 1.22826 1.33896 1.82882 1.23440 0.97679 0.75730 1.00749 1.18291 0.86336 0.95171 0.94112 1.21645 1.02847 0.96802 0.96545 1.21646 1.02844 0.96804 0.96543 1.21154 0.92233 0.91505 1.52222 0.93063 1.25492 0.96604 1.00682 0.94456 1.69921 1.01102 1.32573 1.50013 0.85726 0.77024 0.80951 0.78583 1.20036 1.20867 1.20051 1.43755 1.10903 1.00855 1.50373 0.68081 1.73340 1.01564 1.13554 1.18671 1.83974 1.15406 1.36309 1.72187 0.90257 0.87519 0.87513 0.80351 0.82035 0.80276 0.92430 0.92440 0.94616 0.91810 0.96059 0.96063 0.91813 0.94620 0.92854 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.55 10.41 71.24 0.74 0.19 16 2 C 0.00 -0.08 7.32 24.87 0.18 0.10 16 3 C -0.22 -3.47 10.78 22.13 0.24 -3.23 16 4 C -0.17 -3.36 10.82 22.40 0.24 -3.12 16 5 C 0.03 0.68 7.19 24.29 0.17 0.86 16 6 C 0.09 2.27 7.09 42.35 0.30 2.57 16 7 C -0.13 -3.51 10.81 22.90 0.25 -3.26 16 8 C -0.02 -0.44 7.19 40.69 0.29 -0.14 16 9 C 0.54 18.26 7.95 70.13 0.56 18.81 16 10 O -0.52 -20.14 16.70 19.69 0.33 -19.81 16 11 O -0.35 -12.52 8.89 -57.18 -0.51 -13.03 16 12 C 0.10 4.05 4.27 71.98 0.31 4.35 16 13 C 0.06 2.86 0.58 -52.93 -0.03 2.83 16 14 C -0.12 -5.49 8.11 71.98 0.58 -4.91 16 15 C -0.12 -5.49 8.11 71.98 0.58 -4.91 16 16 C -0.53 -27.66 8.01 25.60 0.21 -27.45 16 17 H 0.05 2.65 7.74 -2.91 -0.02 2.63 16 18 C 0.03 1.45 5.15 84.65 0.44 1.89 16 19 N -0.90 -47.65 9.35 21.45 0.20 -47.44 16 20 Si 0.95 41.81 29.54 68.60 2.03 43.84 16 21 H -0.27 -11.94 7.11 99.48 0.71 -11.24 16 22 H -0.28 -12.22 7.11 99.48 0.71 -11.52 16 23 H -0.28 -11.95 7.11 99.48 0.71 -11.25 16 24 N -0.34 -8.17 6.92 -48.12 -0.33 -8.50 16 25 H 0.47 9.17 8.96 -220.01 -1.97 7.20 16 26 N -0.23 -5.87 12.15 -48.44 -0.59 -6.46 16 27 O -0.18 -4.17 10.67 -6.40 -0.07 -4.23 16 28 H 0.08 0.59 8.14 -2.39 -0.02 0.57 16 29 H 0.11 0.40 8.14 -2.39 -0.02 0.38 16 30 H 0.11 0.40 8.14 -2.39 -0.02 0.38 16 31 H 0.18 1.69 8.06 -2.91 -0.02 1.67 16 32 H 0.16 2.90 8.06 -2.91 -0.02 2.87 16 33 H 0.18 4.44 8.06 -2.91 -0.02 4.41 16 34 H 0.06 2.43 8.14 -2.39 -0.02 2.41 16 35 H 0.06 2.43 8.14 -2.39 -0.02 2.41 16 36 H 0.03 1.42 7.68 -2.39 -0.02 1.41 16 37 H 0.06 3.20 6.07 -2.39 -0.01 3.18 16 38 H 0.02 0.93 8.14 -2.39 -0.02 0.91 16 39 H 0.02 0.93 8.14 -2.39 -0.02 0.91 16 40 H 0.06 3.20 6.07 -2.39 -0.01 3.18 16 41 H 0.03 1.42 7.68 -2.39 -0.02 1.40 16 42 H 0.26 13.38 8.31 -92.71 -0.77 12.61 16 Total: -1.00 -61.72 363.02 5.20 -56.52 By element: Atomic # 1 Polarization: 15.46 SS G_CDS: -0.92 Total: 14.54 kcal Atomic # 6 Polarization: -20.48 SS G_CDS: 5.06 Total: -15.42 kcal Atomic # 7 Polarization: -61.69 SS G_CDS: -0.72 Total: -62.41 kcal Atomic # 8 Polarization: -36.83 SS G_CDS: -0.25 Total: -37.07 kcal Atomic # 14 Polarization: 41.81 SS G_CDS: 2.03 Total: 43.84 kcal Total: -61.72 5.20 -56.52 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000184803651.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.871 kcal (2) G-P(sol) polarization free energy of solvation -61.724 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.853 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.203 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.520 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.649 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds