Wall clock time and date at job start Tue Mar 31 2020 12:35:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86796 * 120.00076 * 2 1 4 4 H 1.48500 * 109.46978 * 0.02562 * 3 2 1 5 5 H 1.48500 * 109.46872 * 119.99915 * 3 2 1 6 6 H 1.48498 * 109.47286 * 239.99978 * 3 2 1 7 7 C 1.37877 * 119.99960 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00127 * 179.97438 * 7 2 1 9 9 C 1.50706 * 120.00082 * 0.02562 * 7 2 1 10 10 O 1.42901 * 112.94531 * 50.32796 * 9 7 2 11 11 C 1.53945 * 113.73856 * 278.74215 * 9 7 2 12 12 N 1.47812 * 86.03494 * 222.08181 * 11 9 7 13 13 C 1.34774 * 134.45853 * 204.63985 * 12 11 9 14 14 O 1.21518 * 120.00202 * 174.35815 * 13 12 11 15 15 C 1.48165 * 120.00062 * 354.36528 * 13 12 11 16 16 C 1.39972 * 120.88859 * 353.36714 * 15 13 12 17 17 C 1.37974 * 119.12994 * 179.97438 * 16 15 13 18 18 N 1.31906 * 120.98064 * 0.02562 * 17 16 15 19 19 C 1.32174 * 121.97225 * 359.97438 * 18 17 16 20 20 O 1.35685 * 119.62569 * 180.02562 * 19 18 17 21 21 C 1.42908 * 116.99564 * 0.02562 * 20 19 18 22 22 C 1.53782 * 113.61400 * 247.49048 * 21 20 19 23 23 C 1.53777 * 87.08065 * 220.02480 * 22 21 20 24 24 C 1.53781 * 87.08222 * 25.43569 * 23 22 21 25 25 C 1.38893 * 120.75130 * 359.74679 * 19 18 17 26 26 C 1.47584 * 91.04932 * 24.55054 * 12 11 9 27 27 H 0.97000 * 119.99971 * 359.97438 * 1 2 3 28 28 H 0.96697 * 114.00405 * 309.67139 * 10 9 7 29 29 H 1.09002 * 113.77292 * 336.34337 * 11 9 7 30 30 H 1.08996 * 113.77451 * 107.74618 * 11 9 7 31 31 H 1.07997 * 120.43457 * 359.95974 * 16 15 13 32 32 H 1.08004 * 119.50854 * 179.97438 * 17 16 15 33 33 H 1.08994 * 112.84889 * 18.80494 * 21 20 19 34 34 H 1.09005 * 113.61480 * 334.57507 * 22 21 20 35 35 H 1.09002 * 113.61073 * 105.46911 * 22 21 20 36 36 H 1.09002 * 113.61470 * 270.88293 * 23 22 21 37 37 H 1.08995 * 113.61465 * 139.98549 * 23 22 21 38 38 H 1.09003 * 113.61094 * 220.02054 * 24 23 22 39 39 H 1.08997 * 113.69265 * 89.13071 * 24 23 22 40 40 H 1.08005 * 120.52711 * 180.27907 * 25 19 18 41 41 H 1.08999 * 113.76594 * 221.15247 * 26 12 11 42 42 H 1.09000 * 113.87159 * 89.76924 * 26 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 1.2841 2.7464 0.0006 5 1 3.1029 1.6963 1.2125 6 1 3.1029 1.6964 -1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0017 10 8 0.2453 -2.5610 -1.0150 11 6 0.7551 -2.9298 1.3906 12 7 1.1911 -4.2905 1.0122 13 6 0.8417 -5.5344 1.3953 14 8 1.3112 -6.5000 0.8261 15 6 -0.1152 -5.7248 2.5104 16 6 -0.5615 -4.6358 3.2681 17 6 -1.4532 -4.8546 4.2980 18 7 -1.8862 -6.0694 4.5748 19 6 -1.4920 -7.1266 3.8863 20 8 -1.9683 -8.3547 4.2117 21 6 -2.8875 -8.4256 5.3037 22 6 -2.3265 -9.1569 6.5346 23 6 -3.7171 -9.7942 6.6919 24 6 -3.9020 -9.5748 5.1811 25 6 -0.6003 -6.9940 2.8297 26 6 2.1608 -3.7401 0.0452 27 1 -0.4850 0.8400 0.0004 28 1 -0.3468 -1.7966 -1.0287 29 1 1.3258 -2.4984 2.2131 30 1 -0.3225 -2.8333 1.5225 31 1 -0.2123 -3.6375 3.0497 32 1 -1.8012 -4.0188 4.8869 33 1 -3.3436 -7.4633 5.5360 34 1 -1.5416 -9.8747 6.2960 35 1 -2.0566 -8.4899 7.3534 36 1 -4.4000 -9.2064 7.3054 37 1 -3.6858 -10.8450 6.9799 38 1 -4.9042 -9.2451 4.9073 39 1 -3.5486 -10.4062 4.5713 40 1 -0.2841 -7.8597 2.2667 41 1 2.2032 -4.2895 -0.8953 42 1 3.1459 -3.5469 0.4697 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000186801874.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:35:34 Heat of formation + Delta-G solvation = -16.418878 kcal Electronic energy + Delta-G solvation = -26098.446421 eV Core-core repulsion = 22239.555720 eV Total energy + Delta-G solvation = -3858.890702 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -40.85750 -39.77030 -38.85777 -37.38584 -36.44782 -34.08276 -32.54459 -32.28607 -30.51398 -28.71322 -26.01889 -25.96729 -25.65032 -25.36042 -23.50830 -23.16993 -20.55480 -19.81902 -19.25282 -18.09569 -17.49296 -17.04234 -16.23641 -15.96627 -15.56893 -15.30396 -15.24393 -15.04053 -14.79954 -14.65618 -14.19458 -13.99506 -13.38474 -13.10105 -12.81405 -12.75759 -12.56470 -12.49168 -12.10030 -11.82643 -11.71261 -11.63280 -11.53306 -11.14441 -11.07378 -10.74356 -10.59270 -10.49548 -10.37102 -10.03424 -9.81555 -9.56842 -9.34550 -8.83637 -8.52356 -8.46054 -7.97455 -6.45705 -4.56356 0.83203 1.18655 2.86330 3.12409 3.18127 3.18912 3.21348 3.41371 3.94510 4.13619 4.22303 4.28250 4.29468 4.56392 4.61441 4.66370 4.79563 4.98709 5.07340 5.16946 5.33156 5.39217 5.44872 5.50952 5.55951 5.64609 5.69724 5.72572 5.81147 5.91406 5.96260 6.06944 6.18093 6.29149 6.32467 6.37928 6.51646 6.60052 6.99759 7.23561 7.56447 7.73914 7.78610 8.27374 8.46925 8.55217 9.14966 9.35331 10.61042 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.026333 B = 0.002685 C = 0.002541 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1063.059840 B =10425.305846 C =11016.025348 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.073 3.927 3 Si 0.908 3.092 4 H -0.285 1.285 5 H -0.274 1.274 6 H -0.273 1.273 7 C -0.539 4.539 8 H 0.072 0.928 9 C 0.240 3.760 10 O -0.571 6.571 11 C 0.070 3.930 12 N -0.621 5.621 13 C 0.569 3.431 14 O -0.551 6.551 15 C -0.038 4.038 16 C -0.187 4.187 17 C 0.134 3.866 18 N -0.533 5.533 19 C 0.314 3.686 20 O -0.293 6.293 21 C 0.061 3.939 22 C -0.152 4.152 23 C -0.139 4.139 24 C -0.138 4.138 25 C -0.139 4.139 26 C 0.113 3.887 27 H 0.274 0.726 28 H 0.392 0.608 29 H 0.088 0.912 30 H 0.077 0.923 31 H 0.158 0.842 32 H 0.165 0.835 33 H 0.117 0.883 34 H 0.089 0.911 35 H 0.073 0.927 36 H 0.084 0.916 37 H 0.076 0.924 38 H 0.075 0.925 39 H 0.091 0.909 40 H 0.151 0.849 41 H 0.074 0.926 42 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.262 -10.106 12.253 17.073 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.130 4.130 3 Si 0.735 3.265 4 H -0.210 1.210 5 H -0.199 1.199 6 H -0.198 1.198 7 C -0.577 4.577 8 H 0.090 0.910 9 C 0.199 3.801 10 O -0.383 6.383 11 C -0.053 4.053 12 N -0.354 5.354 13 C 0.357 3.643 14 O -0.431 6.431 15 C -0.049 4.049 16 C -0.207 4.207 17 C -0.021 4.021 18 N -0.257 5.257 19 C 0.135 3.865 20 O -0.200 6.200 21 C 0.005 3.995 22 C -0.190 4.190 23 C -0.176 4.176 24 C -0.175 4.175 25 C -0.160 4.160 26 C -0.008 4.008 27 H 0.085 0.915 28 H 0.247 0.753 29 H 0.106 0.894 30 H 0.095 0.905 31 H 0.175 0.825 32 H 0.182 0.818 33 H 0.135 0.865 34 H 0.107 0.893 35 H 0.092 0.908 36 H 0.103 0.897 37 H 0.095 0.905 38 H 0.094 0.906 39 H 0.110 0.890 40 H 0.168 0.832 41 H 0.092 0.908 42 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -6.477 -11.616 12.424 18.200 hybrid contribution 0.553 1.685 -0.228 1.788 sum -5.924 -9.931 12.196 16.807 Atomic orbital electron populations 1.69387 1.06147 1.28391 1.49774 1.25067 0.95043 0.99881 0.92990 0.86384 0.79510 0.81595 0.79024 1.20996 1.19880 1.19836 1.21445 0.93927 0.89810 1.52488 0.90999 1.19832 0.85658 0.91239 0.83406 1.86076 1.47080 1.49902 1.55237 1.24560 1.00311 0.77263 1.03123 1.50106 1.39730 1.04443 1.41095 1.17702 0.81722 0.82290 0.82539 1.90722 1.56918 1.39351 1.56106 1.20237 0.96007 0.93075 0.95569 1.22853 0.99765 1.01025 0.97060 1.22369 0.92648 0.92696 0.94386 1.67031 1.28099 0.99882 1.30659 1.19585 0.91286 0.84922 0.90720 1.86349 1.58968 1.24080 1.50647 1.24151 0.90096 0.99983 0.85311 1.23448 0.97754 1.00055 0.97751 1.22623 0.97225 1.01617 0.96154 1.23273 0.98837 0.98393 0.97012 1.21100 0.98488 0.98577 0.97854 1.23529 0.93227 0.92633 0.91413 0.91549 0.75287 0.89414 0.90480 0.82487 0.81782 0.86529 0.89254 0.90848 0.89710 0.90500 0.90633 0.89019 0.83164 0.90767 0.89169 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -21.65 11.20 55.43 0.62 -21.03 16 2 C 0.07 1.74 5.39 -17.82 -0.10 1.64 16 3 Si 0.91 18.71 29.54 -169.99 -5.02 13.69 16 4 H -0.28 -5.87 7.11 56.52 0.40 -5.47 16 5 H -0.27 -5.57 7.11 56.52 0.40 -5.17 16 6 H -0.27 -5.70 7.11 56.52 0.40 -5.30 16 7 C -0.54 -12.83 8.61 -34.44 -0.30 -13.13 16 8 H 0.07 1.67 7.81 -52.49 -0.41 1.26 16 9 C 0.24 5.48 1.40 -90.85 -0.13 5.35 16 10 O -0.57 -14.17 13.48 -35.23 -0.48 -14.64 16 11 C 0.07 1.39 5.66 -2.84 -0.02 1.37 16 12 N -0.62 -12.74 3.60 -179.12 -0.65 -13.38 16 13 C 0.57 11.73 8.01 -12.18 -0.10 11.63 16 14 O -0.55 -12.74 17.20 5.35 0.09 -12.65 16 15 C -0.04 -0.67 5.91 -104.67 -0.62 -1.29 16 16 C -0.19 -2.83 9.16 -39.03 -0.36 -3.19 16 17 C 0.13 1.78 11.17 -17.62 -0.20 1.58 16 18 N -0.53 -7.63 8.56 -13.38 -0.11 -7.74 16 19 C 0.31 4.77 7.49 -17.16 -0.13 4.65 16 20 O -0.29 -4.09 10.13 -18.76 -0.19 -4.28 16 21 C 0.06 0.67 4.18 -25.92 -0.11 0.56 16 22 C -0.15 -1.38 7.91 -25.92 -0.21 -1.59 16 23 C -0.14 -0.99 8.08 -25.92 -0.21 -1.20 16 24 C -0.14 -1.18 7.91 -25.92 -0.21 -1.39 16 25 C -0.14 -2.29 9.61 -38.84 -0.37 -2.66 16 26 C 0.11 2.37 8.23 -2.97 -0.02 2.35 16 27 H 0.27 6.34 8.31 -40.82 -0.34 6.00 16 28 H 0.39 9.78 6.60 45.56 0.30 10.08 16 29 H 0.09 1.63 8.02 -51.93 -0.42 1.22 16 30 H 0.08 1.52 6.90 -51.93 -0.36 1.16 16 31 H 0.16 2.34 4.26 -52.49 -0.22 2.11 16 32 H 0.17 1.62 8.06 -52.48 -0.42 1.20 16 33 H 0.12 1.32 6.87 -51.93 -0.36 0.96 16 34 H 0.09 0.83 8.14 -51.93 -0.42 0.40 16 35 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 36 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 37 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 38 H 0.07 0.59 8.14 -51.93 -0.42 0.16 16 39 H 0.09 0.79 8.14 -51.93 -0.42 0.37 16 40 H 0.15 2.46 7.75 -52.48 -0.41 2.06 16 41 H 0.07 1.59 8.14 -51.93 -0.42 1.16 16 42 H 0.09 1.70 8.09 -51.93 -0.42 1.28 16 LS Contribution 353.41 15.07 5.33 5.33 Total: -1.00 -27.88 353.41 -8.28 -36.16 By element: Atomic # 1 Polarization: 18.67 SS G_CDS: -4.81 Total: 13.86 kcal Atomic # 6 Polarization: 7.75 SS G_CDS: -3.06 Total: 4.69 kcal Atomic # 7 Polarization: -42.01 SS G_CDS: -0.14 Total: -42.15 kcal Atomic # 8 Polarization: -31.00 SS G_CDS: -0.57 Total: -31.57 kcal Atomic # 14 Polarization: 18.71 SS G_CDS: -5.02 Total: 13.69 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -27.88 -8.28 -36.16 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000186801874.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.742 kcal (2) G-P(sol) polarization free energy of solvation -27.885 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.143 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.276 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.161 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.419 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds