Wall clock time and date at job start Tue Mar 31 2020 12:35:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86796 * 120.00076 * 2 1 4 4 H 1.48500 * 109.46978 * 0.02562 * 3 2 1 5 5 H 1.48500 * 109.46872 * 119.99915 * 3 2 1 6 6 H 1.48498 * 109.47286 * 239.99978 * 3 2 1 7 7 C 1.37877 * 119.99960 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00127 * 179.97438 * 7 2 1 9 9 C 1.50706 * 120.00082 * 0.02562 * 7 2 1 10 10 O 1.42901 * 112.94531 * 50.32796 * 9 7 2 11 11 C 1.53945 * 113.73856 * 278.74215 * 9 7 2 12 12 N 1.47812 * 86.03494 * 222.08181 * 11 9 7 13 13 C 1.34774 * 134.45853 * 204.63985 * 12 11 9 14 14 O 1.21518 * 120.00202 * 174.35815 * 13 12 11 15 15 C 1.48165 * 120.00062 * 354.36528 * 13 12 11 16 16 C 1.39972 * 120.88859 * 353.36714 * 15 13 12 17 17 C 1.37974 * 119.12994 * 179.97438 * 16 15 13 18 18 N 1.31906 * 120.98064 * 0.02562 * 17 16 15 19 19 C 1.32174 * 121.97225 * 359.97438 * 18 17 16 20 20 O 1.35685 * 119.62569 * 180.02562 * 19 18 17 21 21 C 1.42908 * 116.99564 * 0.02562 * 20 19 18 22 22 C 1.53782 * 113.61400 * 247.49048 * 21 20 19 23 23 C 1.53777 * 87.08065 * 220.02480 * 22 21 20 24 24 C 1.53781 * 87.08222 * 25.43569 * 23 22 21 25 25 C 1.38893 * 120.75130 * 359.74679 * 19 18 17 26 26 C 1.47584 * 91.04932 * 24.55054 * 12 11 9 27 27 H 0.97000 * 119.99971 * 359.97438 * 1 2 3 28 28 H 0.96697 * 114.00405 * 309.67139 * 10 9 7 29 29 H 1.09002 * 113.77292 * 336.34337 * 11 9 7 30 30 H 1.08996 * 113.77451 * 107.74618 * 11 9 7 31 31 H 1.07997 * 120.43457 * 359.95974 * 16 15 13 32 32 H 1.08004 * 119.50854 * 179.97438 * 17 16 15 33 33 H 1.08994 * 112.84889 * 18.80494 * 21 20 19 34 34 H 1.09005 * 113.61480 * 334.57507 * 22 21 20 35 35 H 1.09002 * 113.61073 * 105.46911 * 22 21 20 36 36 H 1.09002 * 113.61470 * 270.88293 * 23 22 21 37 37 H 1.08995 * 113.61465 * 139.98549 * 23 22 21 38 38 H 1.09003 * 113.61094 * 220.02054 * 24 23 22 39 39 H 1.08997 * 113.69265 * 89.13071 * 24 23 22 40 40 H 1.08005 * 120.52711 * 180.27907 * 25 19 18 41 41 H 1.08999 * 113.76594 * 221.15247 * 26 12 11 42 42 H 1.09000 * 113.87159 * 89.76924 * 26 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 1.2841 2.7464 0.0006 5 1 3.1029 1.6963 1.2125 6 1 3.1029 1.6964 -1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0017 10 8 0.2453 -2.5610 -1.0150 11 6 0.7551 -2.9298 1.3906 12 7 1.1911 -4.2905 1.0122 13 6 0.8417 -5.5344 1.3953 14 8 1.3112 -6.5000 0.8261 15 6 -0.1152 -5.7248 2.5104 16 6 -0.5615 -4.6358 3.2681 17 6 -1.4532 -4.8546 4.2980 18 7 -1.8862 -6.0694 4.5748 19 6 -1.4920 -7.1266 3.8863 20 8 -1.9683 -8.3547 4.2117 21 6 -2.8875 -8.4256 5.3037 22 6 -2.3265 -9.1569 6.5346 23 6 -3.7171 -9.7942 6.6919 24 6 -3.9020 -9.5748 5.1811 25 6 -0.6003 -6.9940 2.8297 26 6 2.1608 -3.7401 0.0452 27 1 -0.4850 0.8400 0.0004 28 1 -0.3468 -1.7966 -1.0287 29 1 1.3258 -2.4984 2.2131 30 1 -0.3225 -2.8333 1.5225 31 1 -0.2123 -3.6375 3.0497 32 1 -1.8012 -4.0188 4.8869 33 1 -3.3436 -7.4633 5.5360 34 1 -1.5416 -9.8747 6.2960 35 1 -2.0566 -8.4899 7.3534 36 1 -4.4000 -9.2064 7.3054 37 1 -3.6858 -10.8450 6.9799 38 1 -4.9042 -9.2451 4.9073 39 1 -3.5486 -10.4062 4.5713 40 1 -0.2841 -7.8597 2.2667 41 1 2.2032 -4.2895 -0.8953 42 1 3.1459 -3.5469 0.4697 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000186801874.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:35:34 Heat of formation + Delta-G solvation = -35.569035 kcal Electronic energy + Delta-G solvation = -26099.276834 eV Core-core repulsion = 22239.555720 eV Total energy + Delta-G solvation = -3859.721115 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -42.07439 -41.17295 -39.95758 -39.01913 -37.40939 -35.88979 -34.13911 -33.83517 -31.70645 -30.36173 -27.53790 -27.23791 -26.65876 -26.49592 -24.75384 -24.35110 -22.03020 -20.79952 -20.54577 -19.58531 -19.08103 -18.37792 -17.68502 -17.14531 -16.90646 -16.69403 -16.55998 -16.39195 -15.97232 -15.93349 -15.75933 -15.16927 -14.94752 -14.49723 -14.28358 -14.07405 -13.78313 -13.47189 -13.43964 -13.40669 -13.11041 -12.78442 -12.71910 -12.47935 -12.25774 -12.23633 -12.20419 -11.67861 -11.40189 -11.26902 -11.12030 -11.10052 -10.80921 -10.63441 -10.22516 -9.66643 -9.61790 -8.24844 -6.41339 -0.47443 0.02044 1.50423 1.52888 1.58689 1.62303 1.71476 2.05189 2.42704 2.68170 2.97068 3.12234 3.26524 3.57247 3.59025 3.69659 3.80723 3.86610 3.87399 3.95139 4.03758 4.12046 4.39907 4.50421 4.53698 4.58300 4.65077 4.74287 4.76014 4.77365 4.83502 4.89316 4.96988 5.00016 5.02541 5.10518 5.19533 5.23657 5.44325 5.74462 5.93365 6.18763 6.63783 6.63958 6.65247 6.92282 7.31641 7.45042 8.81077 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.026333 B = 0.002685 C = 0.002541 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1063.059840 B =10425.305846 C =11016.025348 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.913 5.913 2 C 0.037 3.963 3 Si 0.966 3.034 4 H -0.284 1.284 5 H -0.267 1.267 6 H -0.278 1.278 7 C -0.555 4.555 8 H 0.073 0.927 9 C 0.220 3.780 10 O -0.587 6.587 11 C 0.087 3.913 12 N -0.622 5.622 13 C 0.564 3.436 14 O -0.586 6.586 15 C -0.055 4.055 16 C -0.187 4.187 17 C 0.149 3.851 18 N -0.528 5.528 19 C 0.315 3.685 20 O -0.304 6.304 21 C 0.043 3.957 22 C -0.153 4.153 23 C -0.124 4.124 24 C -0.136 4.136 25 C -0.153 4.153 26 C 0.112 3.888 27 H 0.276 0.724 28 H 0.388 0.612 29 H 0.106 0.894 30 H 0.080 0.920 31 H 0.162 0.838 32 H 0.207 0.793 33 H 0.114 0.886 34 H 0.084 0.916 35 H 0.076 0.924 36 H 0.099 0.901 37 H 0.091 0.909 38 H 0.084 0.916 39 H 0.088 0.912 40 H 0.141 0.859 41 H 0.061 0.939 42 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.084 -9.481 14.478 18.699 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.553 5.553 2 C -0.165 4.165 3 Si 0.791 3.209 4 H -0.209 1.209 5 H -0.191 1.191 6 H -0.204 1.204 7 C -0.593 4.593 8 H 0.092 0.908 9 C 0.179 3.821 10 O -0.399 6.399 11 C -0.035 4.035 12 N -0.354 5.354 13 C 0.354 3.646 14 O -0.469 6.469 15 C -0.065 4.065 16 C -0.207 4.207 17 C -0.007 4.007 18 N -0.252 5.252 19 C 0.137 3.863 20 O -0.211 6.211 21 C -0.013 4.013 22 C -0.190 4.190 23 C -0.161 4.161 24 C -0.173 4.173 25 C -0.175 4.175 26 C -0.010 4.010 27 H 0.086 0.914 28 H 0.243 0.757 29 H 0.124 0.876 30 H 0.098 0.902 31 H 0.179 0.821 32 H 0.224 0.776 33 H 0.132 0.868 34 H 0.102 0.898 35 H 0.095 0.905 36 H 0.117 0.883 37 H 0.109 0.891 38 H 0.103 0.897 39 H 0.107 0.893 40 H 0.159 0.841 41 H 0.079 0.921 42 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -7.304 -11.006 14.665 19.737 hybrid contribution 0.766 1.459 -0.915 1.885 sum -6.538 -9.547 13.750 17.971 Atomic orbital electron populations 1.69448 1.06966 1.29001 1.49909 1.25688 0.95743 1.02358 0.92679 0.85483 0.78297 0.78269 0.78830 1.20948 1.19133 1.20359 1.21650 0.94170 0.90491 1.52978 0.90842 1.20119 0.85848 0.91737 0.84440 1.86067 1.47561 1.49775 1.56494 1.24418 1.00644 0.76502 1.01938 1.50117 1.39603 1.04765 1.40924 1.18199 0.81787 0.81692 0.82911 1.90688 1.58349 1.40262 1.57553 1.20045 0.96540 0.94405 0.95512 1.22909 1.00155 1.00307 0.97317 1.23012 0.90897 0.93349 0.93416 1.67190 1.27812 1.00007 1.30233 1.19591 0.90796 0.85695 0.90244 1.86350 1.59488 1.23500 1.51782 1.24574 0.90576 1.00832 0.85337 1.23463 0.98842 0.99923 0.96816 1.22618 0.95843 1.02609 0.95075 1.23312 0.98512 0.97245 0.98281 1.21046 0.99573 0.98052 0.98806 1.23586 0.94141 0.91823 0.91436 0.91419 0.75737 0.87643 0.90231 0.82108 0.77643 0.86808 0.89767 0.90514 0.88295 0.89052 0.89719 0.89300 0.84122 0.92060 0.87076 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -43.46 11.20 21.45 0.24 -43.22 16 2 C 0.04 1.70 5.39 84.65 0.46 2.16 16 3 Si 0.97 37.50 29.54 68.60 2.03 39.53 16 4 H -0.28 -10.93 7.11 99.48 0.71 -10.22 16 5 H -0.27 -9.99 7.11 99.48 0.71 -9.29 16 6 H -0.28 -10.95 7.11 99.48 0.71 -10.24 16 7 C -0.55 -26.09 8.61 25.60 0.22 -25.87 16 8 H 0.07 3.35 7.81 -2.91 -0.02 3.32 16 9 C 0.22 9.99 1.40 -10.88 -0.02 9.98 16 10 O -0.59 -29.54 13.48 -148.98 -2.01 -31.55 16 11 C 0.09 3.38 5.66 86.44 0.49 3.87 16 12 N -0.62 -25.56 3.60 -842.74 -3.04 -28.59 16 13 C 0.56 23.64 8.01 86.88 0.70 24.34 16 14 O -0.59 -28.00 17.20 -3.77 -0.06 -28.07 16 15 C -0.05 -1.91 5.91 -19.90 -0.12 -2.03 16 16 C -0.19 -5.38 9.16 22.63 0.21 -5.17 16 17 C 0.15 3.54 11.17 84.62 0.94 4.49 16 18 N -0.53 -14.10 8.56 -309.14 -2.65 -16.75 16 19 C 0.32 9.41 7.49 84.80 0.63 10.04 16 20 O -0.30 -8.34 10.13 -90.04 -0.91 -9.26 16 21 C 0.04 0.87 4.18 31.12 0.13 1.00 16 22 C -0.15 -2.51 7.91 31.12 0.25 -2.27 16 23 C -0.12 -1.45 8.08 31.12 0.25 -1.20 16 24 C -0.14 -2.10 7.91 31.12 0.25 -1.85 16 25 C -0.15 -5.12 9.61 22.75 0.22 -4.90 16 26 C 0.11 4.70 8.23 86.48 0.71 5.41 16 27 H 0.28 12.54 8.31 -92.71 -0.77 11.77 16 28 H 0.39 19.64 6.60 -74.06 -0.49 19.15 16 29 H 0.11 3.74 8.02 -2.39 -0.02 3.72 16 30 H 0.08 3.06 6.90 -2.39 -0.02 3.05 16 31 H 0.16 4.48 4.26 -2.91 -0.01 4.47 16 32 H 0.21 3.14 8.06 -2.91 -0.02 3.12 16 33 H 0.11 2.39 6.87 -2.39 -0.02 2.37 16 34 H 0.08 1.47 8.14 -2.38 -0.02 1.45 16 35 H 0.08 1.20 8.14 -2.39 -0.02 1.18 16 36 H 0.10 0.91 8.14 -2.39 -0.02 0.89 16 37 H 0.09 0.84 8.14 -2.39 -0.02 0.82 16 38 H 0.08 1.14 8.14 -2.39 -0.02 1.12 16 39 H 0.09 1.42 8.14 -2.39 -0.02 1.40 16 40 H 0.14 4.86 7.75 -2.91 -0.02 4.84 16 41 H 0.06 2.69 8.14 -2.39 -0.02 2.67 16 42 H 0.11 4.14 8.09 -2.39 -0.02 4.12 16 Total: -1.00 -59.68 353.41 -0.51 -60.18 By element: Atomic # 1 Polarization: 39.15 SS G_CDS: 0.57 Total: 39.72 kcal Atomic # 6 Polarization: 12.68 SS G_CDS: 5.32 Total: 18.00 kcal Atomic # 7 Polarization: -83.12 SS G_CDS: -5.44 Total: -88.56 kcal Atomic # 8 Polarization: -65.89 SS G_CDS: -2.99 Total: -68.87 kcal Atomic # 14 Polarization: 37.50 SS G_CDS: 2.03 Total: 39.53 kcal Total: -59.68 -0.51 -60.18 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000186801874.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.613 kcal (2) G-P(sol) polarization free energy of solvation -59.676 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.063 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.506 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.182 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.569 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds