Wall clock time and date at job start Tue Mar 31 2020 12:40:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.29816 * 126.33754 * 2 1 4 4 O 1.41320 * 109.72604 * 180.02562 * 3 2 1 5 5 C 1.34837 * 109.42371 * 0.02562 * 4 3 2 6 6 N 1.32446 * 133.09678 * 180.02562 * 5 4 3 7 7 C 1.31554 * 122.03857 * 179.97438 * 6 5 4 8 8 C 1.50707 * 119.16495 * 179.97438 * 7 6 5 9 9 C 1.52999 * 109.46794 * 264.99555 * 8 7 6 10 10 C 1.52992 * 109.46951 * 145.00102 * 8 7 6 11 11 C 1.38592 * 121.66625 * 0.25431 * 7 6 5 12 12 C 1.39496 * 119.19146 * 359.52414 * 11 7 6 13 13 C 1.47884 * 121.11094 * 180.21753 * 12 11 7 14 14 O 1.21440 * 120.00294 * 177.29808 * 13 12 11 15 15 O 1.34709 * 119.99696 * 357.30042 * 13 12 11 16 16 C 1.45201 * 116.99526 * 179.97438 * 15 13 12 17 17 C 1.53007 * 109.46966 * 179.97438 * 16 15 13 18 18 C 1.50702 * 109.47126 * 180.02562 * 17 16 15 19 19 H 1.07999 * 120.00040 * 0.02562 * 18 17 16 20 20 C 1.37876 * 119.99939 * 179.97438 * 18 17 16 21 21 N 1.31517 * 119.99779 * 0.02562 * 20 18 17 22 22 Si 1.86799 * 120.00058 * 179.97438 * 20 18 17 23 23 H 1.48500 * 109.46679 * 60.00864 * 22 20 18 24 24 H 1.48501 * 109.46806 * 180.02562 * 22 20 18 25 25 H 1.48499 * 109.47357 * 300.00350 * 22 20 18 26 26 C 1.40523 * 106.85736 * 359.97438 * 5 4 3 27 27 H 1.09002 * 109.46770 * 262.06449 * 1 2 3 28 28 H 1.08997 * 109.47369 * 22.06435 * 1 2 3 29 29 H 1.09001 * 109.47126 * 142.07188 * 1 2 3 30 30 H 1.08999 * 109.47422 * 24.99338 * 8 7 6 31 31 H 1.09001 * 109.47454 * 300.00207 * 9 8 7 32 32 H 1.08997 * 109.47244 * 180.02562 * 9 8 7 33 33 H 1.09006 * 109.47015 * 60.00417 * 9 8 7 34 34 H 1.09005 * 109.47313 * 179.97438 * 10 8 7 35 35 H 1.08998 * 109.47342 * 299.99571 * 10 8 7 36 36 H 1.08999 * 109.47681 * 59.99394 * 10 8 7 37 37 H 1.08002 * 120.40577 * 179.72939 * 11 7 6 38 38 H 1.08998 * 109.47440 * 299.99968 * 16 15 13 39 39 H 1.09003 * 109.47419 * 60.00336 * 16 15 13 40 40 H 1.08998 * 109.47018 * 300.00230 * 17 16 15 41 41 H 1.09003 * 109.46775 * 59.99945 * 17 16 15 42 42 H 0.97004 * 119.99633 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2762 1.0457 0.0000 4 8 3.6305 0.6417 -0.0006 5 6 3.6966 -0.7050 -0.0015 6 7 4.7070 -1.5614 -0.0019 7 6 4.5183 -2.8633 -0.0024 8 6 5.7154 -3.7789 -0.0034 9 6 6.0432 -4.1880 -1.4408 10 6 5.4030 -5.0276 0.8235 11 6 3.2466 -3.4142 -0.0078 12 6 2.1382 -2.5672 -0.0027 13 6 0.7623 -3.1093 -0.0032 14 8 -0.1877 -2.3547 0.0508 15 8 0.5627 -4.4401 -0.0637 16 6 -0.8142 -4.9010 -0.0598 17 6 -0.8408 -6.4290 -0.1337 18 6 -2.2699 -6.9073 -0.1303 19 1 -3.0783 -6.1930 -0.0808 20 6 -2.5452 -8.2569 -0.1914 21 7 -1.5607 -9.1268 -0.2522 22 14 -4.3166 -8.8499 -0.1864 23 1 -5.0310 -8.2846 -1.3591 24 1 -4.3423 -10.3330 -0.2583 25 1 -4.9845 -8.4037 1.0626 26 6 2.3734 -1.1780 -0.0010 27 1 -0.3633 -0.1419 1.0179 28 1 -0.3634 0.9524 -0.3860 29 1 -0.3633 -0.8106 -0.6317 30 1 6.5701 -3.2601 0.4305 31 1 5.1885 -4.7069 -1.8749 32 1 6.9087 -4.8506 -1.4416 33 1 6.2657 -3.2984 -2.0300 34 1 6.2686 -5.6901 0.8224 35 1 5.1694 -4.7363 1.8475 36 1 4.5483 -5.5465 0.3895 37 1 3.1152 -4.4862 -0.0124 38 1 -1.3047 -4.5726 0.8566 39 1 -1.3385 -4.4868 -0.9210 40 1 -0.3504 -6.7570 -1.0502 41 1 -0.3163 -6.8435 0.7273 42 1 -1.7545 -10.0764 -0.2948 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000192651779.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:40:58 Heat of formation + Delta-G solvation = -11.047223 kcal Electronic energy + Delta-G solvation = -26254.518808 eV Core-core repulsion = 22395.861039 eV Total energy + Delta-G solvation = -3858.657769 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -42.37515 -40.27129 -39.48198 -36.64089 -35.43861 -34.85441 -33.53930 -32.79143 -30.39268 -29.91864 -28.81863 -27.48299 -26.05343 -24.69424 -24.43885 -22.52787 -21.10957 -20.70373 -20.04512 -18.18420 -18.02225 -17.81185 -16.84708 -16.67282 -16.14499 -16.04554 -15.29232 -14.72093 -14.60787 -14.44899 -14.01880 -13.89016 -13.85371 -13.43245 -13.26912 -13.24454 -12.68190 -12.54718 -12.43606 -12.27550 -11.87613 -11.67703 -11.47934 -11.39949 -11.31596 -11.21673 -11.18506 -10.87712 -10.79005 -10.44247 -9.96262 -9.84277 -9.77432 -9.66261 -9.43276 -9.22569 -8.53760 -6.20071 -4.25172 -0.21733 0.52947 1.59196 1.81161 2.38427 2.60786 3.23686 3.26099 3.28529 3.30865 3.43634 3.77314 3.95003 4.13261 4.29265 4.44558 4.59650 4.68932 4.81879 4.92626 5.09577 5.16967 5.20262 5.32161 5.39065 5.40593 5.45124 5.55239 5.58471 5.60046 5.75724 5.80586 5.89960 5.92100 5.97628 6.02835 6.10613 6.45084 6.75387 6.81446 7.28317 7.40993 7.47591 7.71836 7.87771 8.11130 8.79769 9.39996 10.91197 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.013469 B = 0.003348 C = 0.002729 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2078.352001 B = 8359.990871 C =10258.479007 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.096 4.096 2 C 0.162 3.838 3 N -0.282 5.282 4 O -0.084 6.084 5 C 0.292 3.708 6 N -0.463 5.463 7 C 0.205 3.795 8 C -0.046 4.046 9 C -0.145 4.145 10 C -0.154 4.154 11 C -0.145 4.145 12 C 0.014 3.986 13 C 0.498 3.502 14 O -0.491 6.491 15 O -0.344 6.344 16 C 0.075 3.925 17 C 0.025 3.975 18 C -0.530 4.530 19 H 0.059 0.941 20 C 0.063 3.937 21 N -0.889 5.889 22 Si 0.900 3.100 23 H -0.275 1.275 24 H -0.285 1.285 25 H -0.275 1.275 26 C -0.207 4.207 27 H 0.096 0.904 28 H 0.074 0.926 29 H 0.132 0.868 30 H 0.099 0.901 31 H 0.063 0.937 32 H 0.070 0.930 33 H 0.060 0.940 34 H 0.071 0.929 35 H 0.062 0.938 36 H 0.070 0.930 37 H 0.172 0.828 38 H 0.064 0.936 39 H 0.064 0.936 40 H 0.029 0.971 41 H 0.029 0.971 42 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.803 11.297 0.221 17.076 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.019 4.019 3 N -0.030 5.030 4 O -0.087 6.087 5 C 0.109 3.891 6 N -0.183 5.183 7 C 0.061 3.939 8 C -0.066 4.066 9 C -0.203 4.203 10 C -0.212 4.212 11 C -0.165 4.165 12 C 0.003 3.997 13 C 0.342 3.658 14 O -0.381 6.381 15 O -0.259 6.259 16 C 0.003 3.997 17 C -0.012 4.012 18 C -0.568 4.568 19 H 0.078 0.922 20 C -0.140 4.140 21 N -0.527 5.527 22 Si 0.727 3.273 23 H -0.200 1.200 24 H -0.211 1.211 25 H -0.200 1.200 26 C -0.214 4.214 27 H 0.115 0.885 28 H 0.092 0.908 29 H 0.149 0.851 30 H 0.117 0.883 31 H 0.083 0.917 32 H 0.089 0.911 33 H 0.079 0.921 34 H 0.090 0.910 35 H 0.081 0.919 36 H 0.089 0.911 37 H 0.189 0.811 38 H 0.082 0.918 39 H 0.082 0.918 40 H 0.048 0.952 41 H 0.048 0.952 42 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 13.492 13.056 0.228 18.776 hybrid contribution -1.882 -1.274 0.052 2.273 sum 11.610 11.781 0.280 16.543 Atomic orbital electron populations 1.21154 0.82944 1.04991 1.06146 1.24702 0.98960 0.88350 0.89841 1.80116 0.83889 1.17153 1.21888 1.89252 1.23641 1.14599 1.81188 1.20252 0.88823 0.86598 0.93450 1.66306 1.33028 1.02414 1.16569 1.21445 0.94886 0.87875 0.89699 1.20226 0.93965 0.94017 0.98368 1.21857 1.02542 1.01925 0.93968 1.22015 1.03104 0.96165 0.99905 1.22469 0.90959 1.02850 1.00216 1.19173 0.92499 0.90606 0.97413 1.20934 0.88565 0.82485 0.73769 1.90709 1.43999 1.58092 1.45343 1.86583 1.36233 1.21400 1.81695 1.23827 0.75122 0.99313 1.01413 1.19188 0.98121 0.84906 0.98990 1.20902 0.91174 0.92125 1.52599 0.92246 1.24966 0.97674 0.96644 0.94699 1.69953 1.31390 1.02092 1.49235 0.86528 0.84302 0.77637 0.78827 1.20025 1.21074 1.20028 1.21293 0.93693 0.94074 1.12311 0.88534 0.90756 0.85086 0.88324 0.91748 0.91092 0.92115 0.91015 0.91936 0.91133 0.81114 0.91763 0.91796 0.95233 0.95222 0.92555 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.10 8.62 36.01 0.31 -0.79 16 2 C 0.16 2.22 7.44 -80.23 -0.60 1.62 16 3 N -0.28 -4.13 12.81 34.84 0.45 -3.68 16 4 O -0.08 -1.29 12.06 7.65 0.09 -1.20 16 5 C 0.29 4.26 8.64 -16.43 -0.14 4.12 16 6 N -0.46 -6.20 10.25 -9.24 -0.09 -6.29 16 7 C 0.20 2.30 5.79 -82.58 -0.48 1.82 16 8 C -0.05 -0.38 3.21 -91.77 -0.29 -0.68 16 9 C -0.15 -1.07 9.17 37.16 0.34 -0.73 16 10 C -0.15 -1.12 8.61 37.15 0.32 -0.80 16 11 C -0.14 -1.71 8.75 -38.98 -0.34 -2.05 16 12 C 0.01 0.19 5.93 -104.47 -0.62 -0.43 16 13 C 0.50 7.74 7.92 34.68 0.27 8.02 16 14 O -0.49 -7.83 11.15 -19.22 -0.21 -8.05 16 15 O -0.34 -5.94 9.59 -40.52 -0.39 -6.33 16 16 C 0.08 1.48 5.41 37.16 0.20 1.68 16 17 C 0.03 0.60 5.35 -27.88 -0.15 0.45 16 18 C -0.53 -13.99 9.11 -34.44 -0.31 -14.30 16 19 H 0.06 1.51 7.74 -52.49 -0.41 1.10 16 20 C 0.06 1.69 5.46 -17.82 -0.10 1.60 16 21 N -0.89 -25.06 13.29 55.43 0.74 -24.32 16 22 Si 0.90 20.45 29.54 -169.99 -5.02 15.43 16 23 H -0.27 -6.15 7.11 56.52 0.40 -5.74 16 24 H -0.29 -6.42 7.11 56.52 0.40 -6.02 16 25 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 26 C -0.21 -2.96 6.16 -104.82 -0.65 -3.61 16 27 H 0.10 1.07 8.03 -51.93 -0.42 0.65 16 28 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 29 H 0.13 1.67 5.10 -54.09 -0.28 1.39 16 30 H 0.10 0.76 8.14 -51.93 -0.42 0.34 16 31 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 32 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 33 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 34 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 35 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 36 H 0.07 0.53 6.45 -51.93 -0.34 0.20 16 37 H 0.17 1.80 5.93 -52.49 -0.31 1.49 16 38 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16 39 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 40 H 0.03 0.74 8.14 -51.93 -0.42 0.32 16 41 H 0.03 0.75 8.14 -51.93 -0.42 0.32 16 42 H 0.26 7.05 8.31 -40.82 -0.34 6.71 16 LS Contribution 356.70 15.07 5.38 5.38 Total: -1.00 -29.24 356.70 -6.83 -36.07 By element: Atomic # 1 Polarization: 2.61 SS G_CDS: -5.53 Total: -2.92 kcal Atomic # 6 Polarization: -1.85 SS G_CDS: -2.23 Total: -4.08 kcal Atomic # 7 Polarization: -35.38 SS G_CDS: 1.09 Total: -34.30 kcal Atomic # 8 Polarization: -15.07 SS G_CDS: -0.51 Total: -15.58 kcal Atomic # 14 Polarization: 20.45 SS G_CDS: -5.02 Total: 15.43 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -29.24 -6.83 -36.07 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000192651779.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.021 kcal (2) G-P(sol) polarization free energy of solvation -29.240 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.219 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.828 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.068 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.047 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds