Wall clock time and date at job start Tue Mar 31 2020 12:40:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.29816 * 126.33754 * 2 1 4 4 O 1.41320 * 109.72604 * 180.02562 * 3 2 1 5 5 C 1.34837 * 109.42371 * 0.02562 * 4 3 2 6 6 N 1.32446 * 133.09678 * 180.02562 * 5 4 3 7 7 C 1.31554 * 122.03857 * 179.97438 * 6 5 4 8 8 C 1.50707 * 119.16495 * 179.97438 * 7 6 5 9 9 C 1.52999 * 109.46794 * 264.99555 * 8 7 6 10 10 C 1.52992 * 109.46951 * 145.00102 * 8 7 6 11 11 C 1.38592 * 121.66625 * 0.25431 * 7 6 5 12 12 C 1.39496 * 119.19146 * 359.52414 * 11 7 6 13 13 C 1.47884 * 121.11094 * 180.21753 * 12 11 7 14 14 O 1.21440 * 120.00294 * 177.29808 * 13 12 11 15 15 O 1.34709 * 119.99696 * 357.30042 * 13 12 11 16 16 C 1.45201 * 116.99526 * 179.97438 * 15 13 12 17 17 C 1.53007 * 109.46966 * 179.97438 * 16 15 13 18 18 C 1.50702 * 109.47126 * 180.02562 * 17 16 15 19 19 H 1.07999 * 120.00040 * 0.02562 * 18 17 16 20 20 C 1.37876 * 119.99939 * 179.97438 * 18 17 16 21 21 N 1.31517 * 119.99779 * 0.02562 * 20 18 17 22 22 Si 1.86799 * 120.00058 * 179.97438 * 20 18 17 23 23 H 1.48500 * 109.46679 * 60.00864 * 22 20 18 24 24 H 1.48501 * 109.46806 * 180.02562 * 22 20 18 25 25 H 1.48499 * 109.47357 * 300.00350 * 22 20 18 26 26 C 1.40523 * 106.85736 * 359.97438 * 5 4 3 27 27 H 1.09002 * 109.46770 * 262.06449 * 1 2 3 28 28 H 1.08997 * 109.47369 * 22.06435 * 1 2 3 29 29 H 1.09001 * 109.47126 * 142.07188 * 1 2 3 30 30 H 1.08999 * 109.47422 * 24.99338 * 8 7 6 31 31 H 1.09001 * 109.47454 * 300.00207 * 9 8 7 32 32 H 1.08997 * 109.47244 * 180.02562 * 9 8 7 33 33 H 1.09006 * 109.47015 * 60.00417 * 9 8 7 34 34 H 1.09005 * 109.47313 * 179.97438 * 10 8 7 35 35 H 1.08998 * 109.47342 * 299.99571 * 10 8 7 36 36 H 1.08999 * 109.47681 * 59.99394 * 10 8 7 37 37 H 1.08002 * 120.40577 * 179.72939 * 11 7 6 38 38 H 1.08998 * 109.47440 * 299.99968 * 16 15 13 39 39 H 1.09003 * 109.47419 * 60.00336 * 16 15 13 40 40 H 1.08998 * 109.47018 * 300.00230 * 17 16 15 41 41 H 1.09003 * 109.46775 * 59.99945 * 17 16 15 42 42 H 0.97004 * 119.99633 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2762 1.0457 0.0000 4 8 3.6305 0.6417 -0.0006 5 6 3.6966 -0.7050 -0.0015 6 7 4.7070 -1.5614 -0.0019 7 6 4.5183 -2.8633 -0.0024 8 6 5.7154 -3.7789 -0.0034 9 6 6.0432 -4.1880 -1.4408 10 6 5.4030 -5.0276 0.8235 11 6 3.2466 -3.4142 -0.0078 12 6 2.1382 -2.5672 -0.0027 13 6 0.7623 -3.1093 -0.0032 14 8 -0.1877 -2.3547 0.0508 15 8 0.5627 -4.4401 -0.0637 16 6 -0.8142 -4.9010 -0.0598 17 6 -0.8408 -6.4290 -0.1337 18 6 -2.2699 -6.9073 -0.1303 19 1 -3.0783 -6.1930 -0.0808 20 6 -2.5452 -8.2569 -0.1914 21 7 -1.5607 -9.1268 -0.2522 22 14 -4.3166 -8.8499 -0.1864 23 1 -5.0310 -8.2846 -1.3591 24 1 -4.3423 -10.3330 -0.2583 25 1 -4.9845 -8.4037 1.0626 26 6 2.3734 -1.1780 -0.0010 27 1 -0.3633 -0.1419 1.0179 28 1 -0.3634 0.9524 -0.3860 29 1 -0.3633 -0.8106 -0.6317 30 1 6.5701 -3.2601 0.4305 31 1 5.1885 -4.7069 -1.8749 32 1 6.9087 -4.8506 -1.4416 33 1 6.2657 -3.2984 -2.0300 34 1 6.2686 -5.6901 0.8224 35 1 5.1694 -4.7363 1.8475 36 1 4.5483 -5.5465 0.3895 37 1 3.1152 -4.4862 -0.0124 38 1 -1.3047 -4.5726 0.8566 39 1 -1.3385 -4.4868 -0.9210 40 1 -0.3504 -6.7570 -1.0502 41 1 -0.3163 -6.8435 0.7273 42 1 -1.7545 -10.0764 -0.2948 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000192651779.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:40:57 Heat of formation + Delta-G solvation = -27.804747 kcal Electronic energy + Delta-G solvation = -26255.245468 eV Core-core repulsion = 22395.861039 eV Total energy + Delta-G solvation = -3859.384430 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -43.44895 -41.54838 -40.51345 -37.99997 -36.23990 -35.93112 -35.44762 -33.94225 -32.21352 -30.90688 -29.80434 -28.10901 -27.52360 -26.17206 -25.40853 -23.76241 -22.81421 -21.55160 -21.22655 -19.26816 -19.18506 -18.98229 -18.35271 -17.96483 -17.52997 -17.45789 -16.57846 -16.18897 -15.63838 -15.35151 -15.25710 -14.89158 -14.83461 -14.65413 -14.38518 -14.31360 -14.24882 -13.64629 -13.54680 -13.12957 -13.04674 -12.93864 -12.76900 -12.58844 -12.53738 -12.48501 -12.38842 -12.05748 -11.86542 -11.77818 -11.55401 -11.43492 -11.39363 -10.89249 -10.80135 -10.56937 -10.24226 -8.24081 -6.36166 -1.28894 -0.52433 0.51260 0.74283 1.20768 1.29223 1.46097 1.46679 1.55212 2.19852 2.38663 2.43058 2.73346 3.00161 3.05463 3.11383 3.34160 3.61551 3.84604 3.97575 4.14087 4.19914 4.22800 4.27546 4.29268 4.38855 4.51381 4.57211 4.63656 4.73272 4.84343 4.91079 4.96055 5.00594 5.04466 5.19849 5.33010 5.38604 5.43480 5.51786 5.56063 5.72979 5.77973 6.09408 6.27095 6.52005 6.77637 7.33591 8.87857 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.013469 B = 0.003348 C = 0.002729 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2078.352001 B = 8359.990871 C =10258.479007 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.091 4.091 2 C 0.163 3.837 3 N -0.294 5.294 4 O -0.100 6.100 5 C 0.279 3.721 6 N -0.471 5.471 7 C 0.212 3.788 8 C -0.043 4.043 9 C -0.144 4.144 10 C -0.154 4.154 11 C -0.134 4.134 12 C 0.006 3.994 13 C 0.500 3.500 14 O -0.493 6.493 15 O -0.347 6.347 16 C 0.091 3.909 17 C 0.030 3.970 18 C -0.549 4.549 19 H 0.067 0.933 20 C 0.010 3.990 21 N -0.925 5.925 22 Si 0.967 3.033 23 H -0.267 1.267 24 H -0.283 1.283 25 H -0.267 1.267 26 C -0.219 4.219 27 H 0.103 0.897 28 H 0.095 0.905 29 H 0.122 0.878 30 H 0.107 0.893 31 H 0.061 0.939 32 H 0.091 0.909 33 H 0.052 0.948 34 H 0.090 0.910 35 H 0.059 0.941 36 H 0.066 0.934 37 H 0.185 0.815 38 H 0.069 0.931 39 H 0.069 0.931 40 H 0.009 0.991 41 H 0.010 0.990 42 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.661 11.109 0.298 16.846 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.016 4.016 3 N -0.044 5.044 4 O -0.102 6.102 5 C 0.097 3.903 6 N -0.192 5.192 7 C 0.068 3.932 8 C -0.062 4.062 9 C -0.201 4.201 10 C -0.211 4.211 11 C -0.154 4.154 12 C -0.005 4.005 13 C 0.345 3.655 14 O -0.384 6.384 15 O -0.263 6.263 16 C 0.019 3.981 17 C -0.007 4.007 18 C -0.587 4.587 19 H 0.085 0.915 20 C -0.190 4.190 21 N -0.564 5.564 22 Si 0.791 3.209 23 H -0.192 1.192 24 H -0.208 1.208 25 H -0.192 1.192 26 C -0.226 4.226 27 H 0.121 0.879 28 H 0.113 0.887 29 H 0.139 0.861 30 H 0.125 0.875 31 H 0.080 0.920 32 H 0.110 0.890 33 H 0.072 0.928 34 H 0.109 0.891 35 H 0.078 0.922 36 H 0.085 0.915 37 H 0.202 0.798 38 H 0.087 0.913 39 H 0.087 0.913 40 H 0.028 0.972 41 H 0.028 0.972 42 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 13.358 12.895 0.305 18.569 hybrid contribution -1.731 -1.221 0.025 2.119 sum 11.627 11.673 0.330 16.479 Atomic orbital electron populations 1.21170 0.81488 1.05718 1.06338 1.25036 0.99734 0.87967 0.88912 1.80094 0.83658 1.17575 1.23047 1.89207 1.24257 1.15172 1.81545 1.20426 0.89324 0.86505 0.94013 1.66414 1.32851 1.03059 1.16857 1.22031 0.95821 0.87499 0.87805 1.20375 0.92783 0.93780 0.99304 1.21872 1.03320 1.01984 0.92957 1.22038 1.03858 0.95813 0.99419 1.22704 0.90701 1.03335 0.98689 1.19051 0.91914 0.90647 0.98876 1.21140 0.89334 0.81608 0.73382 1.90731 1.44381 1.57873 1.45365 1.86542 1.34704 1.22718 1.82344 1.23346 0.76393 0.96493 1.01879 1.18992 0.96815 0.87942 0.96992 1.21345 0.92456 0.92675 1.52211 0.91524 1.25866 1.01955 0.96908 0.94240 1.70070 1.33604 1.02422 1.50259 0.85472 0.79132 0.77061 0.79241 1.19159 1.20828 1.19166 1.21374 0.93815 0.94340 1.13046 0.87901 0.88686 0.86059 0.87459 0.92037 0.88983 0.92842 0.89092 0.92177 0.91507 0.79766 0.91262 0.91268 0.97244 0.97193 0.92432 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.99 8.62 71.24 0.61 -1.38 16 2 C 0.16 4.40 7.44 44.94 0.33 4.74 16 3 N -0.29 -8.56 12.81 -43.67 -0.56 -9.12 16 4 O -0.10 -3.10 12.06 29.78 0.36 -2.74 16 5 C 0.28 8.13 8.64 85.16 0.74 8.86 16 6 N -0.47 -12.30 10.25 -296.38 -3.04 -15.33 16 7 C 0.21 4.51 5.79 42.69 0.25 4.76 16 8 C -0.04 -0.63 3.21 -11.54 -0.04 -0.66 16 9 C -0.14 -1.82 9.17 71.98 0.66 -1.16 16 10 C -0.15 -1.90 8.61 71.98 0.62 -1.28 16 11 C -0.13 -3.03 8.75 22.66 0.20 -2.83 16 12 C 0.01 0.16 5.93 -19.77 -0.12 0.04 16 13 C 0.50 15.17 7.92 70.38 0.56 15.73 16 14 O -0.49 -15.28 11.15 20.03 0.22 -15.06 16 15 O -0.35 -11.80 9.59 -56.18 -0.54 -12.34 16 16 C 0.09 3.54 5.41 71.98 0.39 3.93 16 17 C 0.03 1.44 5.35 29.85 0.16 1.60 16 18 C -0.55 -28.89 9.11 25.60 0.23 -28.65 16 19 H 0.07 3.33 7.74 -2.91 -0.02 3.30 16 20 C 0.01 0.52 5.46 84.65 0.46 0.98 16 21 N -0.92 -52.49 13.29 21.45 0.28 -52.20 16 22 Si 0.97 41.39 29.54 68.60 2.03 43.42 16 23 H -0.27 -11.00 7.11 99.48 0.71 -10.29 16 24 H -0.28 -11.91 7.11 99.48 0.71 -11.20 16 25 H -0.27 -11.00 7.11 99.48 0.71 -10.30 16 26 C -0.22 -6.19 6.16 -19.99 -0.12 -6.32 16 27 H 0.10 2.15 8.03 -2.39 -0.02 2.13 16 28 H 0.09 1.68 8.14 -2.39 -0.02 1.66 16 29 H 0.12 2.98 5.10 -36.56 -0.19 2.79 16 30 H 0.11 1.43 8.14 -2.39 -0.02 1.41 16 31 H 0.06 0.82 8.14 -2.39 -0.02 0.80 16 32 H 0.09 0.81 8.14 -2.39 -0.02 0.79 16 33 H 0.05 0.77 8.14 -2.38 -0.02 0.75 16 34 H 0.09 0.81 8.14 -2.38 -0.02 0.79 16 35 H 0.06 0.78 8.14 -2.39 -0.02 0.76 16 36 H 0.07 0.89 6.45 -2.39 -0.02 0.87 16 37 H 0.19 3.64 5.93 -2.91 -0.02 3.62 16 38 H 0.07 2.61 8.14 -2.39 -0.02 2.59 16 39 H 0.07 2.60 8.14 -2.39 -0.02 2.58 16 40 H 0.01 0.48 8.14 -2.39 -0.02 0.46 16 41 H 0.01 0.50 8.14 -2.39 -0.02 0.48 16 42 H 0.27 14.26 8.31 -92.71 -0.77 13.49 16 Total: -1.00 -62.10 356.70 4.57 -57.53 By element: Atomic # 1 Polarization: 6.61 SS G_CDS: 0.88 Total: 7.48 kcal Atomic # 6 Polarization: -6.58 SS G_CDS: 4.94 Total: -1.64 kcal Atomic # 7 Polarization: -73.34 SS G_CDS: -3.31 Total: -76.65 kcal Atomic # 8 Polarization: -30.18 SS G_CDS: 0.04 Total: -30.14 kcal Atomic # 14 Polarization: 41.39 SS G_CDS: 2.03 Total: 43.42 kcal Total: -62.10 4.57 -57.53 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000192651779.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.725 kcal (2) G-P(sol) polarization free energy of solvation -62.098 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.373 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.568 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.529 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.805 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds