Wall clock time and date at job start Tue Mar 31 2020 12:01:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30668 * 1 3 3 Si 1.86802 * 120.00308 * 2 1 4 4 H 1.48506 * 109.46936 * 239.99994 * 3 2 1 5 5 H 1.48498 * 109.46959 * 359.97438 * 3 2 1 6 6 H 1.48497 * 109.47469 * 119.99567 * 3 2 1 7 7 C 1.40053 * 120.00078 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00139 * 180.02562 * 7 2 1 9 9 C 1.46373 * 119.99819 * 359.97438 * 7 2 1 10 10 O 1.21694 * 119.99823 * 0.02562 * 9 7 2 11 11 N 1.34771 * 120.00081 * 180.02562 * 9 7 2 12 12 C 1.46500 * 120.00074 * 180.02562 * 11 9 7 13 13 C 1.50704 * 109.47192 * 180.02562 * 12 11 9 14 14 C 1.38307 * 119.96769 * 89.99695 * 13 12 11 15 15 C 1.38258 * 120.14074 * 179.97438 * 14 13 12 16 16 C 1.38124 * 120.07071 * 359.97430 * 15 14 13 17 17 C 1.38853 * 119.93177 * 0.02837 * 16 15 14 18 18 N 1.39929 * 120.07241 * 180.02562 * 17 16 15 19 19 C 1.34769 * 120.00106 * 146.82316 * 18 17 16 20 20 O 1.21286 * 120.00505 * 354.72596 * 19 18 17 21 21 C 1.50711 * 119.99996 * 174.72488 * 19 18 17 22 22 H 1.09003 * 109.98867 * 56.08584 * 21 19 18 23 23 C 1.54097 * 109.87775 * 295.00211 * 21 19 18 24 24 C 1.54809 * 104.18534 * 238.54519 * 23 21 19 25 25 C 1.54991 * 102.12646 * 339.10182 * 24 23 21 26 26 O 1.43743 * 109.87652 * 177.16981 * 21 19 18 27 27 C 1.38094 * 119.96336 * 270.25605 * 13 12 11 28 28 H 0.96998 * 119.99885 * 0.02562 * 1 2 3 29 29 H 0.97000 * 119.99781 * 0.02562 * 11 9 7 30 30 H 1.08998 * 109.47233 * 60.00055 * 12 11 9 31 31 H 1.09004 * 109.46802 * 299.99698 * 12 11 9 32 32 H 1.07997 * 119.92361 * 0.02562 * 14 13 12 33 33 H 1.08000 * 119.96094 * 180.02562 * 15 14 13 34 34 H 1.08006 * 120.03419 * 180.02562 * 16 15 14 35 35 H 0.97004 * 119.99481 * 326.82687 * 18 17 16 36 36 H 1.08997 * 110.48961 * 119.86581 * 23 21 19 37 37 H 1.09003 * 110.60338 * 357.27746 * 23 21 19 38 38 H 1.09000 * 110.90665 * 97.32279 * 24 23 21 39 39 H 1.09002 * 110.90613 * 220.88665 * 24 23 21 40 40 H 1.09002 * 110.62083 * 155.54217 * 25 24 23 41 41 H 1.08997 * 110.61861 * 278.54561 * 25 24 23 42 42 H 1.08005 * 120.03352 * 0.02562 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3067 0.0000 0.0000 3 14 2.2408 1.6177 0.0000 4 1 3.0945 1.6963 -1.2126 5 1 1.2758 2.7464 -0.0006 6 1 3.0945 1.6964 1.2125 7 6 2.0070 -1.2129 0.0005 8 1 3.0869 -1.2129 0.0010 9 6 1.2751 -2.4805 0.0017 10 8 0.0581 -2.4804 0.0017 11 7 1.9489 -3.6477 0.0027 12 6 1.2164 -4.9164 0.0033 13 6 2.1956 -6.0619 0.0051 14 6 2.6437 -6.5859 1.2040 15 6 3.5417 -7.6371 1.2099 16 6 3.9938 -8.1677 0.0174 17 6 3.5460 -7.6439 -1.1880 18 7 4.0017 -8.1796 -2.3977 19 6 3.1869 -8.2096 -3.4708 20 8 2.0301 -7.8614 -3.3639 21 6 3.7133 -8.6758 -4.8038 22 1 4.1353 -9.6763 -4.7086 23 6 4.7911 -7.6988 -5.3123 24 6 4.2468 -7.2101 -6.6767 25 6 3.2388 -8.3285 -7.0446 26 8 2.6518 -8.6832 -5.7730 27 6 2.6488 -6.5837 -1.1905 28 1 -0.4850 0.8400 -0.0004 29 1 2.9189 -3.6477 0.0031 30 1 0.5901 -4.9747 -0.8869 31 1 0.5894 -4.9735 0.8931 32 1 2.2907 -6.1735 2.1377 33 1 3.8893 -8.0444 2.1478 34 1 4.6950 -8.9892 0.0227 35 1 4.9041 -8.5293 -2.4639 36 1 5.7423 -8.2146 -5.4436 37 1 4.9044 -6.8608 -4.6245 38 1 3.7416 -6.2499 -6.5726 39 1 5.0464 -7.1488 -7.4150 40 1 2.4778 -7.9501 -7.7272 41 1 3.7560 -9.1832 -7.4804 42 1 2.3021 -6.1711 -2.1264 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000219738804.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:01:42 Heat of formation + Delta-G solvation = -90.404750 kcal Electronic energy + Delta-G solvation = -25750.166673 eV Core-core repulsion = 21888.067703 eV Total energy + Delta-G solvation = -3862.098970 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.97959 -39.55032 -38.24341 -37.05207 -35.10363 -33.44122 -32.54856 -32.29066 -30.79256 -30.57327 -28.91903 -26.80394 -24.83270 -24.42607 -22.62679 -22.12985 -21.25212 -20.43033 -19.60728 -18.11461 -17.55582 -16.93199 -16.69075 -16.27212 -15.73530 -15.56108 -15.26642 -14.90840 -14.47217 -14.38255 -14.07932 -14.03209 -13.93048 -13.43099 -13.01600 -12.68678 -12.65509 -12.23398 -12.15821 -12.07929 -11.73567 -11.62970 -11.35219 -11.22570 -11.15301 -10.92503 -10.79370 -10.50732 -10.41550 -10.31455 -10.19430 -9.70447 -8.80500 -8.75727 -8.12915 -7.53489 -7.43899 -6.13488 -4.59345 1.28868 1.48156 2.37701 2.56285 3.18590 3.23037 3.25225 3.59156 3.83794 4.02184 4.16184 4.24404 4.35196 4.55193 4.64021 4.73806 4.87909 4.91706 4.98888 5.12018 5.17874 5.26344 5.30371 5.35725 5.45027 5.46376 5.50897 5.63909 5.64567 5.84012 6.04742 6.22356 6.24354 6.39268 6.43296 6.51501 6.56228 6.94888 7.10917 7.16980 7.47553 7.91989 7.98291 8.13820 8.37608 9.06663 9.59620 10.65241 10.83880 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.011846 B = 0.003086 C = 0.002658 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2363.097000 B = 9071.046035 C =10530.122612 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.768 5.768 2 C 0.087 3.913 3 Si 0.908 3.092 4 H -0.269 1.269 5 H -0.281 1.281 6 H -0.268 1.268 7 C -0.545 4.545 8 H 0.067 0.933 9 C 0.555 3.445 10 O -0.580 6.580 11 N -0.762 5.762 12 C 0.169 3.831 13 C -0.066 4.066 14 C -0.117 4.117 15 C -0.104 4.104 16 C -0.149 4.149 17 C 0.139 3.861 18 N -0.672 5.672 19 C 0.507 3.493 20 O -0.489 6.489 21 C 0.064 3.936 22 H 0.096 0.904 23 C -0.149 4.149 24 C -0.155 4.155 25 C 0.044 3.956 26 O -0.346 6.346 27 C -0.104 4.104 28 H 0.269 0.731 29 H 0.380 0.620 30 H 0.059 0.941 31 H 0.059 0.941 32 H 0.126 0.874 33 H 0.125 0.875 34 H 0.121 0.879 35 H 0.408 0.592 36 H 0.088 0.912 37 H 0.085 0.915 38 H 0.083 0.917 39 H 0.086 0.914 40 H 0.099 0.901 41 H 0.065 0.935 42 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.647 -19.593 -8.901 26.607 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.397 5.397 2 C -0.132 4.132 3 Si 0.733 3.267 4 H -0.193 1.193 5 H -0.206 1.206 6 H -0.193 1.193 7 C -0.582 4.582 8 H 0.085 0.915 9 C 0.359 3.641 10 O -0.463 6.463 11 N -0.417 5.417 12 C 0.044 3.956 13 C -0.067 4.067 14 C -0.136 4.136 15 C -0.122 4.122 16 C -0.170 4.170 17 C 0.046 3.954 18 N -0.319 5.319 19 C 0.293 3.707 20 O -0.360 6.360 21 C 0.002 3.998 22 H 0.114 0.886 23 C -0.187 4.187 24 C -0.193 4.193 25 C -0.032 4.032 26 O -0.264 6.264 27 C -0.124 4.124 28 H 0.079 0.921 29 H 0.211 0.789 30 H 0.077 0.923 31 H 0.077 0.923 32 H 0.144 0.856 33 H 0.143 0.857 34 H 0.139 0.861 35 H 0.244 0.756 36 H 0.107 0.893 37 H 0.104 0.896 38 H 0.102 0.898 39 H 0.104 0.896 40 H 0.118 0.882 41 H 0.083 0.917 42 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges 13.440 -19.279 -8.880 25.124 hybrid contribution 1.694 0.532 -0.081 1.778 sum 15.134 -18.747 -8.961 25.706 Atomic orbital electron populations 1.70013 1.07039 1.27318 1.35326 1.25709 0.94617 1.00237 0.92679 0.86433 0.79799 0.81092 0.79383 1.19341 1.20572 1.19301 1.20835 0.93508 0.89340 1.54544 0.91513 1.18237 0.87222 0.82335 0.76326 1.90606 1.14084 1.86725 1.54853 1.46175 1.08532 1.04222 1.82814 1.19828 0.92107 0.81966 1.01671 1.20111 0.97327 0.96884 0.92414 1.21155 0.97700 0.96761 0.98010 1.20883 0.97464 0.96651 0.97237 1.20773 1.03726 1.01286 0.91184 1.17637 0.98850 0.94333 0.84607 1.43364 1.16976 1.62135 1.09426 1.20653 0.86253 0.78561 0.85235 1.90808 1.16752 1.44341 1.84147 1.22577 0.88746 1.00114 0.88343 0.88604 1.22972 0.98065 0.99474 0.98201 1.23160 0.99519 1.00261 0.96333 1.23690 0.96676 0.96306 0.86577 1.89057 1.30017 1.90426 1.16895 1.21085 0.97801 0.94362 0.99174 0.92070 0.78860 0.92319 0.92290 0.85629 0.85730 0.86064 0.75631 0.89316 0.89587 0.89798 0.89566 0.88248 0.91717 0.84795 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -23.60 11.83 55.55 0.66 -22.95 16 2 C 0.09 2.49 5.50 -17.37 -0.10 2.40 16 3 Si 0.91 20.50 29.56 -169.99 -5.02 15.48 16 4 H -0.27 -5.89 7.11 56.52 0.40 -5.48 16 5 H -0.28 -6.18 7.11 56.52 0.40 -5.78 16 6 H -0.27 -5.86 7.11 56.52 0.40 -5.46 16 7 C -0.55 -15.81 9.54 -35.63 -0.34 -16.15 16 8 H 0.07 1.77 7.85 -52.49 -0.41 1.35 16 9 C 0.55 16.38 7.75 -12.99 -0.10 16.28 16 10 O -0.58 -19.48 15.02 5.19 0.08 -19.40 16 11 N -0.76 -17.99 5.54 -62.90 -0.35 -18.34 16 12 C 0.17 3.56 5.80 -5.19 -0.03 3.53 16 13 C -0.07 -1.13 5.25 -104.65 -0.55 -1.67 16 14 C -0.12 -1.68 9.70 -39.55 -0.38 -2.07 16 15 C -0.10 -1.21 10.04 -39.62 -0.40 -1.61 16 16 C -0.15 -1.65 9.96 -39.40 -0.39 -2.04 16 17 C 0.14 1.82 6.28 -83.69 -0.53 1.29 16 18 N -0.67 -6.80 5.31 -9.86 -0.05 -6.85 16 19 C 0.51 6.38 6.69 -10.98 -0.07 6.30 16 20 O -0.49 -8.79 14.22 -14.02 -0.20 -8.99 16 21 C 0.06 0.58 3.85 -27.30 -0.11 0.47 16 22 H 0.10 0.58 8.14 -51.93 -0.42 0.16 16 23 C -0.15 -0.97 6.61 -25.20 -0.17 -1.14 16 24 C -0.16 -1.04 7.15 -24.73 -0.18 -1.22 16 25 C 0.04 0.33 7.73 38.21 0.30 0.63 16 26 O -0.35 -4.12 10.74 -54.81 -0.59 -4.71 16 27 C -0.10 -1.71 8.31 -39.39 -0.33 -2.03 16 28 H 0.27 7.49 8.29 -40.82 -0.34 7.15 16 29 H 0.38 8.03 8.44 -40.82 -0.34 7.68 16 30 H 0.06 1.35 8.09 -51.93 -0.42 0.93 16 31 H 0.06 1.27 8.08 -51.93 -0.42 0.85 16 32 H 0.13 1.71 8.06 -52.49 -0.42 1.29 16 33 H 0.12 1.11 8.06 -52.49 -0.42 0.68 16 34 H 0.12 0.95 8.06 -52.48 -0.42 0.53 16 35 H 0.41 2.38 8.82 -40.82 -0.36 2.02 16 36 H 0.09 0.32 8.14 -51.93 -0.42 -0.11 16 37 H 0.09 0.64 7.70 -51.93 -0.40 0.24 16 38 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 39 H 0.09 0.38 8.14 -51.93 -0.42 -0.04 16 40 H 0.10 0.69 8.14 -51.93 -0.42 0.27 16 41 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 42 H 0.13 2.51 6.43 -52.48 -0.34 2.17 16 LS Contribution 360.40 15.07 5.43 5.43 Total: -1.00 -39.66 360.40 -9.05 -48.71 By element: Atomic # 1 Polarization: 14.28 SS G_CDS: -5.63 Total: 8.65 kcal Atomic # 6 Polarization: 6.34 SS G_CDS: -3.37 Total: 2.97 kcal Atomic # 7 Polarization: -48.39 SS G_CDS: 0.26 Total: -48.13 kcal Atomic # 8 Polarization: -32.39 SS G_CDS: -0.71 Total: -33.10 kcal Atomic # 14 Polarization: 20.50 SS G_CDS: -5.02 Total: 15.48 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -39.66 -9.05 -48.71 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000219738804.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.697 kcal (2) G-P(sol) polarization free energy of solvation -39.659 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.357 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.048 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.707 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.405 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds