Wall clock time and date at job start Tue Mar 31 2020 12:01:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30668 * 1 3 3 Si 1.86802 * 120.00308 * 2 1 4 4 H 1.48506 * 109.46936 * 239.99994 * 3 2 1 5 5 H 1.48498 * 109.46959 * 359.97438 * 3 2 1 6 6 H 1.48497 * 109.47469 * 119.99567 * 3 2 1 7 7 C 1.40053 * 120.00078 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00139 * 180.02562 * 7 2 1 9 9 C 1.46373 * 119.99819 * 359.97438 * 7 2 1 10 10 O 1.21694 * 119.99823 * 0.02562 * 9 7 2 11 11 N 1.34771 * 120.00081 * 180.02562 * 9 7 2 12 12 C 1.46500 * 120.00074 * 180.02562 * 11 9 7 13 13 C 1.50704 * 109.47192 * 180.02562 * 12 11 9 14 14 C 1.38307 * 119.96769 * 89.99695 * 13 12 11 15 15 C 1.38258 * 120.14074 * 179.97438 * 14 13 12 16 16 C 1.38124 * 120.07071 * 359.97430 * 15 14 13 17 17 C 1.38853 * 119.93177 * 0.02837 * 16 15 14 18 18 N 1.39929 * 120.07241 * 180.02562 * 17 16 15 19 19 C 1.34769 * 120.00106 * 146.82316 * 18 17 16 20 20 O 1.21286 * 120.00505 * 354.72596 * 19 18 17 21 21 C 1.50711 * 119.99996 * 174.72488 * 19 18 17 22 22 H 1.09003 * 109.98867 * 56.08584 * 21 19 18 23 23 C 1.54097 * 109.87775 * 295.00211 * 21 19 18 24 24 C 1.54809 * 104.18534 * 238.54519 * 23 21 19 25 25 C 1.54991 * 102.12646 * 339.10182 * 24 23 21 26 26 O 1.43743 * 109.87652 * 177.16981 * 21 19 18 27 27 C 1.38094 * 119.96336 * 270.25605 * 13 12 11 28 28 H 0.96998 * 119.99885 * 0.02562 * 1 2 3 29 29 H 0.97000 * 119.99781 * 0.02562 * 11 9 7 30 30 H 1.08998 * 109.47233 * 60.00055 * 12 11 9 31 31 H 1.09004 * 109.46802 * 299.99698 * 12 11 9 32 32 H 1.07997 * 119.92361 * 0.02562 * 14 13 12 33 33 H 1.08000 * 119.96094 * 180.02562 * 15 14 13 34 34 H 1.08006 * 120.03419 * 180.02562 * 16 15 14 35 35 H 0.97004 * 119.99481 * 326.82687 * 18 17 16 36 36 H 1.08997 * 110.48961 * 119.86581 * 23 21 19 37 37 H 1.09003 * 110.60338 * 357.27746 * 23 21 19 38 38 H 1.09000 * 110.90665 * 97.32279 * 24 23 21 39 39 H 1.09002 * 110.90613 * 220.88665 * 24 23 21 40 40 H 1.09002 * 110.62083 * 155.54217 * 25 24 23 41 41 H 1.08997 * 110.61861 * 278.54561 * 25 24 23 42 42 H 1.08005 * 120.03352 * 0.02562 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3067 0.0000 0.0000 3 14 2.2408 1.6177 0.0000 4 1 3.0945 1.6963 -1.2126 5 1 1.2758 2.7464 -0.0006 6 1 3.0945 1.6964 1.2125 7 6 2.0070 -1.2129 0.0005 8 1 3.0869 -1.2129 0.0010 9 6 1.2751 -2.4805 0.0017 10 8 0.0581 -2.4804 0.0017 11 7 1.9489 -3.6477 0.0027 12 6 1.2164 -4.9164 0.0033 13 6 2.1956 -6.0619 0.0051 14 6 2.6437 -6.5859 1.2040 15 6 3.5417 -7.6371 1.2099 16 6 3.9938 -8.1677 0.0174 17 6 3.5460 -7.6439 -1.1880 18 7 4.0017 -8.1796 -2.3977 19 6 3.1869 -8.2096 -3.4708 20 8 2.0301 -7.8614 -3.3639 21 6 3.7133 -8.6758 -4.8038 22 1 4.1353 -9.6763 -4.7086 23 6 4.7911 -7.6988 -5.3123 24 6 4.2468 -7.2101 -6.6767 25 6 3.2388 -8.3285 -7.0446 26 8 2.6518 -8.6832 -5.7730 27 6 2.6488 -6.5837 -1.1905 28 1 -0.4850 0.8400 -0.0004 29 1 2.9189 -3.6477 0.0031 30 1 0.5901 -4.9747 -0.8869 31 1 0.5894 -4.9735 0.8931 32 1 2.2907 -6.1735 2.1377 33 1 3.8893 -8.0444 2.1478 34 1 4.6950 -8.9892 0.0227 35 1 4.9041 -8.5293 -2.4639 36 1 5.7423 -8.2146 -5.4436 37 1 4.9044 -6.8608 -4.6245 38 1 3.7416 -6.2499 -6.5726 39 1 5.0464 -7.1488 -7.4150 40 1 2.4778 -7.9501 -7.7272 41 1 3.7560 -9.1832 -7.4804 42 1 2.3021 -6.1711 -2.1264 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000219738804.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:01:41 Heat of formation + Delta-G solvation = -121.227240 kcal Electronic energy + Delta-G solvation = -25751.503236 eV Core-core repulsion = 21888.067703 eV Total energy + Delta-G solvation = -3863.435533 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.91420 -40.50108 -39.52760 -38.91206 -36.34261 -35.17746 -34.48469 -33.20370 -32.11982 -31.62020 -29.82391 -28.81202 -26.60050 -25.21164 -23.58584 -22.74879 -22.50300 -21.73011 -21.35461 -19.53799 -18.81930 -18.13678 -17.50723 -17.45703 -17.28795 -16.61256 -16.57244 -16.20291 -15.93707 -15.87704 -15.51888 -14.92260 -14.86338 -14.63042 -14.46345 -14.36827 -13.90614 -13.70151 -13.33751 -13.12485 -12.86453 -12.74683 -12.70543 -12.67308 -12.57721 -12.23551 -12.15577 -12.05197 -11.92139 -11.46423 -11.17767 -10.94294 -10.59656 -10.11221 -9.71071 -9.57672 -9.16030 -8.31270 -6.89919 0.19749 0.35883 1.38402 1.43022 1.43842 1.55159 1.73226 2.23697 2.43612 2.70428 2.95242 3.29344 3.35023 3.55174 3.58261 3.74911 3.83911 3.94214 3.99034 4.17168 4.22130 4.32918 4.35785 4.37064 4.53975 4.67712 4.68956 4.73543 4.74593 4.87746 4.95556 4.98895 5.10489 5.25981 5.28378 5.33275 5.47044 5.68126 5.74188 5.82537 6.02248 6.12744 6.21593 6.36293 6.82560 7.05580 7.48930 8.44074 8.64010 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.011846 B = 0.003086 C = 0.002658 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2363.097000 B = 9071.046035 C =10530.122612 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.823 5.823 2 C 0.025 3.975 3 Si 1.004 2.996 4 H -0.254 1.254 5 H -0.273 1.273 6 H -0.251 1.251 7 C -0.573 4.573 8 H 0.089 0.911 9 C 0.535 3.465 10 O -0.634 6.634 11 N -0.747 5.747 12 C 0.177 3.823 13 C -0.088 4.088 14 C -0.124 4.124 15 C -0.090 4.090 16 C -0.126 4.126 17 C 0.136 3.864 18 N -0.651 5.651 19 C 0.500 3.500 20 O -0.557 6.557 21 C 0.065 3.935 22 H 0.138 0.862 23 C -0.143 4.143 24 C -0.156 4.156 25 C 0.038 3.962 26 O -0.392 6.392 27 C -0.126 4.126 28 H 0.276 0.724 29 H 0.394 0.606 30 H 0.023 0.977 31 H 0.047 0.953 32 H 0.128 0.872 33 H 0.167 0.833 34 H 0.171 0.829 35 H 0.433 0.567 36 H 0.133 0.867 37 H 0.071 0.929 38 H 0.055 0.945 39 H 0.117 0.883 40 H 0.093 0.907 41 H 0.095 0.905 42 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.650 -21.242 -8.593 30.847 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.452 5.452 2 C -0.190 4.190 3 Si 0.823 3.177 4 H -0.178 1.178 5 H -0.198 1.198 6 H -0.174 1.174 7 C -0.609 4.609 8 H 0.107 0.893 9 C 0.340 3.660 10 O -0.522 6.522 11 N -0.401 5.401 12 C 0.052 3.948 13 C -0.089 4.089 14 C -0.143 4.143 15 C -0.108 4.108 16 C -0.146 4.146 17 C 0.042 3.958 18 N -0.300 5.300 19 C 0.288 3.712 20 O -0.433 6.433 21 C 0.004 3.996 22 H 0.155 0.845 23 C -0.180 4.180 24 C -0.194 4.194 25 C -0.038 4.038 26 O -0.311 6.311 27 C -0.147 4.147 28 H 0.085 0.915 29 H 0.227 0.773 30 H 0.042 0.958 31 H 0.065 0.935 32 H 0.146 0.854 33 H 0.185 0.815 34 H 0.189 0.811 35 H 0.274 0.726 36 H 0.151 0.849 37 H 0.090 0.910 38 H 0.074 0.926 39 H 0.135 0.865 40 H 0.112 0.888 41 H 0.114 0.886 42 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 18.552 -20.995 -8.576 29.300 hybrid contribution 0.146 0.911 -0.198 0.944 sum 18.697 -20.083 -8.774 28.808 Atomic orbital electron populations 1.70199 1.09713 1.29151 1.36178 1.27085 0.95592 1.05202 0.91085 0.84990 0.78129 0.74214 0.80414 1.17800 1.19783 1.17442 1.21391 0.94763 0.89822 1.54919 0.89258 1.18740 0.86891 0.84294 0.76119 1.90553 1.16321 1.87902 1.57430 1.45839 1.09107 1.04000 1.81156 1.19698 0.92954 0.82826 0.99300 1.19680 0.98331 0.96668 0.94194 1.21259 0.98500 0.97845 0.96672 1.21333 0.95408 0.94720 0.99352 1.21287 1.02700 1.01108 0.89494 1.17749 0.98001 0.93318 0.86740 1.43217 1.17816 1.60925 1.08021 1.21574 0.85568 0.77154 0.86910 1.90791 1.19865 1.47432 1.85229 1.22864 0.88465 1.02598 0.85664 0.84527 1.23044 0.98975 0.98816 0.97193 1.23184 1.00019 0.98616 0.97570 1.23920 0.96908 0.97722 0.85201 1.89014 1.32461 1.90768 1.18870 1.20848 0.99960 0.96558 0.97325 0.91460 0.77259 0.95832 0.93472 0.85354 0.81550 0.81120 0.72625 0.84861 0.91048 0.92631 0.86516 0.88827 0.88649 0.88582 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -52.57 11.83 21.84 0.26 -52.31 16 2 C 0.03 1.47 5.50 85.31 0.47 1.93 16 3 Si 1.00 42.12 29.56 68.60 2.03 44.15 16 4 H -0.25 -10.00 7.11 99.48 0.71 -9.29 16 5 H -0.27 -11.02 7.11 99.48 0.71 -10.31 16 6 H -0.25 -9.76 7.11 99.48 0.71 -9.05 16 7 C -0.57 -34.10 9.54 24.83 0.24 -33.86 16 8 H 0.09 4.73 7.85 -2.91 -0.02 4.71 16 9 C 0.53 33.47 7.75 86.36 0.67 34.14 16 10 O -0.63 -45.72 15.02 -4.33 -0.07 -45.79 16 11 N -0.75 -37.63 5.54 -471.14 -2.61 -40.24 16 12 C 0.18 8.19 5.80 85.63 0.50 8.69 16 13 C -0.09 -3.15 5.25 -19.88 -0.10 -3.25 16 14 C -0.12 -3.46 9.70 22.29 0.22 -3.24 16 15 C -0.09 -1.74 10.04 22.25 0.22 -1.52 16 16 C -0.13 -2.23 9.96 22.39 0.22 -2.00 16 17 C 0.14 3.37 6.28 38.15 0.24 3.61 16 18 N -0.65 -11.94 5.31 -303.50 -1.61 -13.55 16 19 C 0.50 12.62 6.69 87.66 0.59 13.20 16 20 O -0.56 -21.63 14.22 15.67 0.22 -21.41 16 21 C 0.06 1.07 3.85 30.22 0.12 1.19 16 22 H 0.14 1.12 8.14 -2.39 -0.02 1.10 16 23 C -0.14 -1.51 6.61 31.58 0.21 -1.30 16 24 C -0.16 -1.91 7.15 31.89 0.23 -1.69 16 25 C 0.04 0.55 7.73 72.66 0.56 1.11 16 26 O -0.39 -9.41 10.74 -130.26 -1.40 -10.81 16 27 C -0.13 -4.40 8.31 22.39 0.19 -4.21 16 28 H 0.28 15.89 8.29 -92.71 -0.77 15.12 16 29 H 0.39 17.40 8.44 -92.71 -0.78 16.62 16 30 H 0.02 1.22 8.09 -2.39 -0.02 1.20 16 31 H 0.05 2.25 8.08 -2.39 -0.02 2.23 16 32 H 0.13 3.46 8.06 -2.91 -0.02 3.43 16 33 H 0.17 1.94 8.06 -2.91 -0.02 1.92 16 34 H 0.17 1.43 8.06 -2.91 -0.02 1.41 16 35 H 0.43 3.31 8.82 -92.71 -0.82 2.49 16 36 H 0.13 0.26 8.14 -2.39 -0.02 0.24 16 37 H 0.07 0.98 7.70 -2.39 -0.02 0.96 16 38 H 0.05 0.97 8.14 -2.39 -0.02 0.95 16 39 H 0.12 0.70 8.14 -2.39 -0.02 0.68 16 40 H 0.09 1.36 8.14 -2.39 -0.02 1.34 16 41 H 0.10 0.77 8.14 -2.39 -0.02 0.75 16 42 H 0.10 4.05 6.43 -2.91 -0.02 4.03 16 Total: -1.00 -97.48 360.40 0.84 -96.64 By element: Atomic # 1 Polarization: 31.06 SS G_CDS: -0.53 Total: 30.53 kcal Atomic # 6 Polarization: 8.24 SS G_CDS: 4.56 Total: 12.79 kcal Atomic # 7 Polarization: -102.14 SS G_CDS: -3.97 Total: -106.11 kcal Atomic # 8 Polarization: -76.76 SS G_CDS: -1.24 Total: -78.00 kcal Atomic # 14 Polarization: 42.12 SS G_CDS: 2.03 Total: 44.15 kcal Total: -97.48 0.84 -96.64 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000219738804.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.586 kcal (2) G-P(sol) polarization free energy of solvation -97.484 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -122.070 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.843 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -96.641 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.227 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds