Wall clock time and date at job start Tue Mar 31 2020 12:01:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30672 * 1 3 3 Si 1.86791 * 120.00023 * 2 1 4 4 H 1.48497 * 109.47414 * 274.98488 * 3 2 1 5 5 H 1.48501 * 109.47088 * 34.98564 * 3 2 1 6 6 H 1.48503 * 109.47456 * 154.98179 * 3 2 1 7 7 C 1.40053 * 119.99933 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99899 * 173.82124 * 7 2 1 9 9 C 1.46371 * 120.00288 * 353.81804 * 7 2 1 10 10 O 1.21684 * 119.99959 * 6.08109 * 9 7 2 11 11 N 1.34773 * 120.00176 * 186.07120 * 9 7 2 12 12 C 1.46498 * 120.00204 * 180.02562 * 11 9 7 13 13 C 1.50695 * 109.47276 * 180.02562 * 12 11 9 14 14 C 1.38308 * 119.96676 * 270.01897 * 13 12 11 15 15 C 1.38252 * 120.14758 * 179.97438 * 14 13 12 16 16 C 1.38137 * 120.06816 * 359.76547 * 15 14 13 17 17 C 1.38856 * 119.92838 * 0.50999 * 16 15 14 18 18 N 1.39921 * 120.06890 * 179.74497 * 17 16 15 19 19 C 1.34777 * 120.00087 * 326.74766 * 18 17 16 20 20 O 1.21284 * 119.99990 * 354.86907 * 19 18 17 21 21 C 1.50698 * 120.00155 * 174.86867 * 19 18 17 22 22 H 1.09000 * 110.35568 * 305.69187 * 21 19 18 23 23 C 1.54952 * 110.31107 * 67.83436 * 21 19 18 24 24 C 1.55302 * 100.94354 * 155.36075 * 23 21 19 25 25 C 1.54384 * 102.25327 * 325.87094 * 24 23 21 26 26 O 1.43237 * 107.58957 * 21.35502 * 25 24 23 27 27 C 1.38098 * 119.97039 * 89.99768 * 13 12 11 28 28 H 0.96999 * 120.00168 * 359.97438 * 1 2 3 29 29 H 0.97003 * 120.00229 * 0.02562 * 11 9 7 30 30 H 1.08996 * 109.47599 * 60.00065 * 12 11 9 31 31 H 1.09001 * 109.46924 * 299.99948 * 12 11 9 32 32 H 1.08005 * 119.92173 * 359.97438 * 14 13 12 33 33 H 1.08001 * 119.96877 * 180.02562 * 15 14 13 34 34 H 1.08003 * 120.03462 * 180.27651 * 16 15 14 35 35 H 0.97001 * 120.00309 * 146.75712 * 18 17 16 36 36 H 1.09005 * 111.12045 * 37.43872 * 23 21 19 37 37 H 1.09001 * 111.12601 * 273.28501 * 23 21 19 38 38 H 1.08994 * 110.84855 * 207.67605 * 24 23 21 39 39 H 1.08999 * 110.84834 * 84.06055 * 24 23 21 40 40 H 1.09000 * 109.82381 * 261.84146 * 25 24 23 41 41 H 1.08994 * 109.90509 * 140.91629 * 25 24 23 42 42 H 1.08001 * 120.02877 * 0.02562 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3067 0.0000 0.0000 3 14 2.2407 1.6177 0.0000 4 1 2.3829 2.1072 -1.3947 5 1 1.4948 2.6199 0.8028 6 1 3.5869 1.4121 0.5921 7 6 2.0070 -1.2129 -0.0005 8 1 3.0822 -1.2156 -0.1012 9 6 1.2815 -2.4769 0.1354 10 8 0.0647 -2.4829 0.1376 11 7 1.9613 -3.6342 0.2579 12 6 1.2352 -4.8994 0.3934 13 6 2.2203 -6.0335 0.5138 14 6 2.6714 -6.6803 -0.6224 15 6 3.5755 -7.7208 -0.5163 16 6 4.0349 -8.1146 0.7255 17 6 3.5796 -7.4711 1.8686 18 7 4.0390 -7.8711 3.1283 19 6 4.3329 -9.1661 3.3584 20 8 4.1119 -9.9991 2.5050 21 6 4.9364 -9.5792 4.6761 22 1 5.8362 -8.9987 4.8796 23 6 3.9075 -9.3952 5.8201 24 6 4.4366 -10.4201 6.8600 25 6 4.9864 -11.5469 5.9592 26 8 5.2402 -10.9831 4.6671 27 6 2.6720 -6.4256 1.7585 28 1 -0.4850 0.8400 0.0004 29 1 2.9313 -3.6295 0.2565 30 1 0.6080 -5.0542 -0.4844 31 1 0.6098 -4.8656 1.2855 32 1 2.3165 -6.3717 -1.5947 33 1 3.9261 -8.2236 -1.4055 34 1 4.7446 -8.9246 0.8074 35 1 4.1457 -7.2164 3.8360 36 1 2.9018 -9.6547 5.4893 37 1 3.9389 -8.3807 6.2172 38 1 3.6262 -10.7874 7.4896 39 1 5.2318 -9.9840 7.4646 40 1 4.2499 -12.3461 5.8758 41 1 5.9121 -11.9397 6.3796 42 1 2.3193 -5.9202 2.6454 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000219738883.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:01:47 Heat of formation + Delta-G solvation = -92.412091 kcal Electronic energy + Delta-G solvation = -25273.288444 eV Core-core repulsion = 21411.102429 eV Total energy + Delta-G solvation = -3862.186015 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.01504 -39.63029 -38.37255 -37.09449 -35.11001 -33.51909 -32.68283 -32.35588 -30.85127 -30.63741 -29.04032 -26.82167 -24.89216 -24.46734 -22.38054 -22.18667 -21.83821 -20.16986 -19.63891 -18.24353 -17.75239 -17.16801 -16.61479 -16.13308 -15.90511 -15.40146 -15.33565 -15.20016 -14.77675 -14.37650 -14.11378 -13.97996 -13.76486 -13.59628 -13.06899 -12.79365 -12.68144 -12.43673 -12.30579 -12.02364 -11.92704 -11.58268 -11.50262 -11.39727 -11.22859 -10.99625 -10.85656 -10.48153 -10.45185 -10.27469 -10.23561 -9.73834 -8.85470 -8.77729 -8.15327 -7.59036 -7.51728 -6.20074 -4.64195 1.28084 1.45548 2.29785 2.48309 3.13101 3.20471 3.24288 3.46105 3.82534 3.84038 4.11853 4.15986 4.29332 4.54173 4.56045 4.57981 4.72121 4.92530 4.98698 5.10666 5.15187 5.17113 5.27635 5.28584 5.29680 5.44444 5.49590 5.52871 5.59112 5.77056 6.03412 6.13483 6.30034 6.31506 6.41950 6.45826 6.58557 6.87107 7.07822 7.13824 7.43188 7.83446 7.92525 8.07354 8.32826 9.01909 9.52821 10.58848 10.77252 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.020085 B = 0.002286 C = 0.002160 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1393.773346 B =12244.097259 C =12956.967643 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.768 5.768 2 C 0.087 3.913 3 Si 0.907 3.093 4 H -0.273 1.273 5 H -0.279 1.279 6 H -0.265 1.265 7 C -0.545 4.545 8 H 0.068 0.932 9 C 0.555 3.445 10 O -0.581 6.581 11 N -0.762 5.762 12 C 0.170 3.830 13 C -0.068 4.068 14 C -0.116 4.116 15 C -0.103 4.103 16 C -0.124 4.124 17 C 0.138 3.862 18 N -0.669 5.669 19 C 0.511 3.489 20 O -0.499 6.499 21 C 0.066 3.934 22 H 0.102 0.898 23 C -0.149 4.149 24 C -0.153 4.153 25 C 0.048 3.952 26 O -0.354 6.354 27 C -0.127 4.127 28 H 0.268 0.732 29 H 0.381 0.619 30 H 0.059 0.941 31 H 0.057 0.943 32 H 0.126 0.874 33 H 0.124 0.876 34 H 0.130 0.870 35 H 0.410 0.590 36 H 0.087 0.913 37 H 0.095 0.905 38 H 0.088 0.912 39 H 0.082 0.918 40 H 0.073 0.927 41 H 0.074 0.926 42 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.801 -18.540 12.741 25.403 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.397 5.397 2 C -0.132 4.132 3 Si 0.732 3.268 4 H -0.198 1.198 5 H -0.204 1.204 6 H -0.189 1.189 7 C -0.582 4.582 8 H 0.086 0.914 9 C 0.359 3.641 10 O -0.464 6.464 11 N -0.418 5.418 12 C 0.045 3.955 13 C -0.069 4.069 14 C -0.135 4.135 15 C -0.122 4.122 16 C -0.144 4.144 17 C 0.045 3.955 18 N -0.315 5.315 19 C 0.297 3.703 20 O -0.372 6.372 21 C 0.005 3.995 22 H 0.119 0.881 23 C -0.187 4.187 24 C -0.191 4.191 25 C -0.029 4.029 26 O -0.272 6.272 27 C -0.148 4.148 28 H 0.079 0.921 29 H 0.213 0.787 30 H 0.077 0.923 31 H 0.075 0.925 32 H 0.144 0.856 33 H 0.142 0.858 34 H 0.148 0.852 35 H 0.246 0.754 36 H 0.105 0.895 37 H 0.114 0.886 38 H 0.107 0.893 39 H 0.101 0.899 40 H 0.091 0.909 41 H 0.092 0.908 42 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges 10.652 -19.223 11.999 25.039 hybrid contribution 0.917 1.187 0.620 1.623 sum 11.569 -18.036 12.618 24.867 Atomic orbital electron populations 1.70027 1.07080 1.27263 1.35293 1.25710 0.94598 1.00297 0.92631 0.86367 0.80255 0.81503 0.78683 1.19826 1.20421 1.18872 1.20867 0.94097 0.89497 1.53742 0.91395 1.18248 0.87140 0.82317 0.76421 1.90601 1.14114 1.86329 1.55372 1.46197 1.08651 1.05039 1.81918 1.19807 0.92063 0.82236 1.01343 1.19993 0.97607 0.96919 0.92356 1.21159 0.97828 0.95906 0.98596 1.21004 0.97355 0.96873 0.96960 1.21067 1.01132 1.01056 0.91132 1.17621 0.96521 0.97105 0.84253 1.43385 1.66089 1.09150 1.12916 1.20589 0.78438 0.82007 0.89279 1.90752 1.49895 1.50450 1.46067 1.22816 0.98408 0.85636 0.92626 0.88062 1.23302 0.99538 1.01474 0.94354 1.23130 1.01826 0.95897 0.98255 1.23239 1.00745 0.96234 0.82674 1.88540 1.87287 1.19724 1.31657 1.20812 0.97280 0.98380 0.98330 0.92113 0.78729 0.92290 0.92514 0.85629 0.85757 0.85201 0.75374 0.89470 0.88611 0.89345 0.89913 0.90856 0.90760 0.85531 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -22.96 11.85 55.55 0.66 -22.30 16 2 C 0.09 2.43 5.49 -17.36 -0.10 2.33 16 3 Si 0.91 19.97 29.56 -169.99 -5.03 14.95 16 4 H -0.27 -5.88 7.11 56.52 0.40 -5.48 16 5 H -0.28 -6.01 7.11 56.52 0.40 -5.61 16 6 H -0.26 -5.62 7.11 56.52 0.40 -5.22 16 7 C -0.55 -15.30 9.53 -35.63 -0.34 -15.64 16 8 H 0.07 1.75 7.85 -52.49 -0.41 1.34 16 9 C 0.55 15.70 7.74 -12.99 -0.10 15.60 16 10 O -0.58 -18.79 15.05 5.20 0.08 -18.71 16 11 N -0.76 -16.91 5.54 -62.91 -0.35 -17.26 16 12 C 0.17 3.27 5.80 -5.20 -0.03 3.24 16 13 C -0.07 -1.05 5.25 -104.65 -0.55 -1.60 16 14 C -0.12 -1.65 9.70 -39.55 -0.38 -2.04 16 15 C -0.10 -1.36 10.04 -39.61 -0.40 -1.75 16 16 C -0.12 -1.70 8.66 -39.39 -0.34 -2.04 16 17 C 0.14 1.80 6.28 -83.70 -0.53 1.27 16 18 N -0.67 -6.69 5.34 -9.87 -0.05 -6.74 16 19 C 0.51 5.80 6.92 -10.99 -0.08 5.73 16 20 O -0.50 -7.86 14.23 -13.77 -0.20 -8.06 16 21 C 0.07 0.54 3.87 -26.85 -0.10 0.43 16 22 H 0.10 0.58 8.14 -51.93 -0.42 0.16 16 23 C -0.15 -0.82 6.56 -24.48 -0.16 -0.98 16 24 C -0.15 -0.67 7.02 -24.79 -0.17 -0.85 16 25 C 0.05 0.31 7.79 37.88 0.30 0.61 16 26 O -0.35 -3.72 10.61 -54.55 -0.58 -4.30 16 27 C -0.13 -1.75 9.61 -39.39 -0.38 -2.13 16 28 H 0.27 7.25 8.29 -40.82 -0.34 6.91 16 29 H 0.38 7.58 8.44 -40.82 -0.34 7.23 16 30 H 0.06 1.19 8.09 -51.93 -0.42 0.77 16 31 H 0.06 1.14 8.08 -51.93 -0.42 0.72 16 32 H 0.13 1.71 8.06 -52.48 -0.42 1.28 16 33 H 0.12 1.35 8.06 -52.49 -0.42 0.92 16 34 H 0.13 1.84 6.41 -52.48 -0.34 1.50 16 35 H 0.41 2.70 8.82 -40.82 -0.36 2.34 16 36 H 0.09 0.58 8.05 -51.93 -0.42 0.16 16 37 H 0.10 0.31 8.14 -51.93 -0.42 -0.11 16 38 H 0.09 0.30 8.14 -51.93 -0.42 -0.13 16 39 H 0.08 0.26 8.14 -51.93 -0.42 -0.17 16 40 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 41 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 42 H 0.13 1.59 8.06 -52.49 -0.42 1.17 16 LS Contribution 360.81 15.07 5.44 5.44 Total: -1.00 -37.99 360.81 -9.04 -47.03 By element: Atomic # 1 Polarization: 13.43 SS G_CDS: -5.65 Total: 7.78 kcal Atomic # 6 Polarization: 5.54 SS G_CDS: -3.36 Total: 2.18 kcal Atomic # 7 Polarization: -46.56 SS G_CDS: 0.26 Total: -46.30 kcal Atomic # 8 Polarization: -30.38 SS G_CDS: -0.70 Total: -31.07 kcal Atomic # 14 Polarization: 19.97 SS G_CDS: -5.03 Total: 14.95 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -37.99 -9.04 -47.03 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000219738883.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.384 kcal (2) G-P(sol) polarization free energy of solvation -37.991 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.375 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.037 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.028 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.412 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds