Wall clock time and date at job start Tue Mar 31 2020 12:01:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30672 * 1 3 3 Si 1.86791 * 120.00023 * 2 1 4 4 H 1.48497 * 109.47414 * 274.98488 * 3 2 1 5 5 H 1.48501 * 109.47088 * 34.98564 * 3 2 1 6 6 H 1.48503 * 109.47456 * 154.98179 * 3 2 1 7 7 C 1.40053 * 119.99933 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99899 * 173.82124 * 7 2 1 9 9 C 1.46371 * 120.00288 * 353.81804 * 7 2 1 10 10 O 1.21684 * 119.99959 * 6.08109 * 9 7 2 11 11 N 1.34773 * 120.00176 * 186.07120 * 9 7 2 12 12 C 1.46498 * 120.00204 * 180.02562 * 11 9 7 13 13 C 1.50695 * 109.47276 * 180.02562 * 12 11 9 14 14 C 1.38308 * 119.96676 * 270.01897 * 13 12 11 15 15 C 1.38252 * 120.14758 * 179.97438 * 14 13 12 16 16 C 1.38137 * 120.06816 * 359.76547 * 15 14 13 17 17 C 1.38856 * 119.92838 * 0.50999 * 16 15 14 18 18 N 1.39921 * 120.06890 * 179.74497 * 17 16 15 19 19 C 1.34777 * 120.00087 * 326.74766 * 18 17 16 20 20 O 1.21284 * 119.99990 * 354.86907 * 19 18 17 21 21 C 1.50698 * 120.00155 * 174.86867 * 19 18 17 22 22 H 1.09000 * 110.35568 * 305.69187 * 21 19 18 23 23 C 1.54952 * 110.31107 * 67.83436 * 21 19 18 24 24 C 1.55302 * 100.94354 * 155.36075 * 23 21 19 25 25 C 1.54384 * 102.25327 * 325.87094 * 24 23 21 26 26 O 1.43237 * 107.58957 * 21.35502 * 25 24 23 27 27 C 1.38098 * 119.97039 * 89.99768 * 13 12 11 28 28 H 0.96999 * 120.00168 * 359.97438 * 1 2 3 29 29 H 0.97003 * 120.00229 * 0.02562 * 11 9 7 30 30 H 1.08996 * 109.47599 * 60.00065 * 12 11 9 31 31 H 1.09001 * 109.46924 * 299.99948 * 12 11 9 32 32 H 1.08005 * 119.92173 * 359.97438 * 14 13 12 33 33 H 1.08001 * 119.96877 * 180.02562 * 15 14 13 34 34 H 1.08003 * 120.03462 * 180.27651 * 16 15 14 35 35 H 0.97001 * 120.00309 * 146.75712 * 18 17 16 36 36 H 1.09005 * 111.12045 * 37.43872 * 23 21 19 37 37 H 1.09001 * 111.12601 * 273.28501 * 23 21 19 38 38 H 1.08994 * 110.84855 * 207.67605 * 24 23 21 39 39 H 1.08999 * 110.84834 * 84.06055 * 24 23 21 40 40 H 1.09000 * 109.82381 * 261.84146 * 25 24 23 41 41 H 1.08994 * 109.90509 * 140.91629 * 25 24 23 42 42 H 1.08001 * 120.02877 * 0.02562 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3067 0.0000 0.0000 3 14 2.2407 1.6177 0.0000 4 1 2.3829 2.1072 -1.3947 5 1 1.4948 2.6199 0.8028 6 1 3.5869 1.4121 0.5921 7 6 2.0070 -1.2129 -0.0005 8 1 3.0822 -1.2156 -0.1012 9 6 1.2815 -2.4769 0.1354 10 8 0.0647 -2.4829 0.1376 11 7 1.9613 -3.6342 0.2579 12 6 1.2352 -4.8994 0.3934 13 6 2.2203 -6.0335 0.5138 14 6 2.6714 -6.6803 -0.6224 15 6 3.5755 -7.7208 -0.5163 16 6 4.0349 -8.1146 0.7255 17 6 3.5796 -7.4711 1.8686 18 7 4.0390 -7.8711 3.1283 19 6 4.3329 -9.1661 3.3584 20 8 4.1119 -9.9991 2.5050 21 6 4.9364 -9.5792 4.6761 22 1 5.8362 -8.9987 4.8796 23 6 3.9075 -9.3952 5.8201 24 6 4.4366 -10.4201 6.8600 25 6 4.9864 -11.5469 5.9592 26 8 5.2402 -10.9831 4.6671 27 6 2.6720 -6.4256 1.7585 28 1 -0.4850 0.8400 0.0004 29 1 2.9313 -3.6295 0.2565 30 1 0.6080 -5.0542 -0.4844 31 1 0.6098 -4.8656 1.2855 32 1 2.3165 -6.3717 -1.5947 33 1 3.9261 -8.2236 -1.4055 34 1 4.7446 -8.9246 0.8074 35 1 4.1457 -7.2164 3.8360 36 1 2.9018 -9.6547 5.4893 37 1 3.9389 -8.3807 6.2172 38 1 3.6262 -10.7874 7.4896 39 1 5.2318 -9.9840 7.4646 40 1 4.2499 -12.3461 5.8758 41 1 5.9121 -11.9397 6.3796 42 1 2.3193 -5.9202 2.6454 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000219738883.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:01:46 Heat of formation + Delta-G solvation = -120.210453 kcal Electronic energy + Delta-G solvation = -25274.493871 eV Core-core repulsion = 21411.102429 eV Total energy + Delta-G solvation = -3863.391442 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.88504 -40.51481 -39.54245 -38.89395 -36.24251 -35.18587 -34.45106 -33.21807 -32.11608 -31.62687 -29.92236 -28.73409 -26.53434 -25.19750 -23.41030 -22.86650 -22.61791 -21.74682 -21.09738 -19.41507 -18.99774 -18.23819 -17.59109 -17.38889 -17.09332 -16.75174 -16.34686 -16.18752 -15.99024 -15.81379 -15.71844 -14.98256 -14.73600 -14.55398 -14.38457 -14.23163 -13.99228 -13.57405 -13.29224 -13.11076 -13.04865 -12.77998 -12.71963 -12.63713 -12.53583 -12.30949 -12.20985 -11.98975 -11.88200 -11.45485 -11.08164 -10.91821 -10.51277 -10.08983 -9.70471 -9.49420 -9.17430 -8.28521 -6.83826 0.19367 0.31527 1.40896 1.42475 1.43015 1.59427 1.69321 2.26433 2.48047 2.69605 2.89473 3.32402 3.34780 3.55479 3.61481 3.71505 3.88274 3.91852 4.06120 4.11877 4.16709 4.30005 4.34275 4.37513 4.50477 4.72769 4.74755 4.76111 4.78269 4.87625 4.95787 4.96724 5.17276 5.23737 5.29693 5.33925 5.47651 5.64684 5.83096 5.88812 5.99285 6.20586 6.27556 6.33498 6.88093 6.99505 7.54854 8.49297 8.67906 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.020085 B = 0.002286 C = 0.002160 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1393.773346 B =12244.097259 C =12956.967643 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.822 5.822 2 C 0.028 3.972 3 Si 0.998 3.002 4 H -0.264 1.264 5 H -0.273 1.273 6 H -0.247 1.247 7 C -0.572 4.572 8 H 0.088 0.912 9 C 0.539 3.461 10 O -0.633 6.633 11 N -0.747 5.747 12 C 0.177 3.823 13 C -0.078 4.078 14 C -0.121 4.121 15 C -0.098 4.098 16 C -0.130 4.130 17 C 0.140 3.860 18 N -0.655 5.655 19 C 0.509 3.491 20 O -0.550 6.550 21 C 0.067 3.933 22 H 0.132 0.868 23 C -0.146 4.146 24 C -0.144 4.144 25 C 0.037 3.963 26 O -0.392 6.392 27 C -0.125 4.125 28 H 0.275 0.725 29 H 0.395 0.605 30 H 0.044 0.956 31 H 0.045 0.955 32 H 0.129 0.871 33 H 0.148 0.852 34 H 0.126 0.874 35 H 0.429 0.571 36 H 0.070 0.930 37 H 0.125 0.875 38 H 0.099 0.901 39 H 0.103 0.897 40 H 0.067 0.933 41 H 0.088 0.912 42 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.241 -17.931 14.364 27.030 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.451 5.451 2 C -0.187 4.187 3 Si 0.818 3.182 4 H -0.188 1.188 5 H -0.198 1.198 6 H -0.171 1.171 7 C -0.608 4.608 8 H 0.106 0.894 9 C 0.343 3.657 10 O -0.521 6.521 11 N -0.402 5.402 12 C 0.053 3.947 13 C -0.079 4.079 14 C -0.140 4.140 15 C -0.116 4.116 16 C -0.150 4.150 17 C 0.046 3.954 18 N -0.302 5.302 19 C 0.297 3.703 20 O -0.426 6.426 21 C 0.006 3.994 22 H 0.149 0.851 23 C -0.184 4.184 24 C -0.181 4.181 25 C -0.038 4.038 26 O -0.311 6.311 27 C -0.146 4.146 28 H 0.085 0.915 29 H 0.228 0.772 30 H 0.062 0.938 31 H 0.064 0.936 32 H 0.147 0.853 33 H 0.166 0.834 34 H 0.144 0.856 35 H 0.268 0.732 36 H 0.089 0.911 37 H 0.143 0.857 38 H 0.118 0.882 39 H 0.121 0.879 40 H 0.085 0.915 41 H 0.106 0.894 42 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges 13.147 -18.640 13.662 26.588 hybrid contribution 0.173 0.847 0.120 0.872 sum 13.319 -17.794 13.781 26.152 Atomic orbital electron populations 1.70191 1.09568 1.28982 1.36389 1.26987 0.95506 1.04989 0.91213 0.85000 0.78962 0.75114 0.79171 1.18834 1.19751 1.17059 1.21403 0.95214 0.90146 1.54068 0.89419 1.18629 0.86749 0.84158 0.76174 1.90556 1.16252 1.87498 1.57755 1.45839 1.09218 1.04852 1.80268 1.19735 0.92668 0.82244 1.00069 1.19657 0.98012 0.96507 0.93772 1.21221 0.98135 0.96263 0.98384 1.21215 0.96469 0.96190 0.97764 1.21215 1.01167 1.00906 0.91759 1.17648 0.95928 0.96402 0.85409 1.43314 1.65106 1.09442 1.12389 1.21335 0.77350 0.81587 0.90029 1.90726 1.52099 1.51805 1.47962 1.23024 1.00040 0.85158 0.91153 0.85111 1.23357 0.97862 1.03530 0.93602 1.23140 1.02691 0.94597 0.97712 1.23450 1.01535 0.96916 0.81940 1.88501 1.87539 1.21116 1.33948 1.20838 0.97152 0.98578 0.98036 0.91542 0.77175 0.93798 0.93645 0.85275 0.83392 0.85579 0.73188 0.91086 0.85653 0.88200 0.87852 0.91505 0.89392 0.84395 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -50.18 11.85 21.84 0.26 -49.92 16 2 C 0.03 1.56 5.49 85.31 0.47 2.03 16 3 Si 1.00 40.43 29.56 68.60 2.03 42.46 16 4 H -0.26 -10.22 7.11 99.48 0.71 -9.51 16 5 H -0.27 -10.66 7.11 99.48 0.71 -9.95 16 6 H -0.25 -9.25 7.11 99.48 0.71 -8.54 16 7 C -0.57 -32.19 9.53 24.83 0.24 -31.95 16 8 H 0.09 4.42 7.85 -2.91 -0.02 4.39 16 9 C 0.54 31.20 7.74 86.36 0.67 31.87 16 10 O -0.63 -42.57 15.05 -4.30 -0.06 -42.63 16 11 N -0.75 -33.58 5.54 -471.17 -2.61 -36.19 16 12 C 0.18 6.97 5.80 85.63 0.50 7.47 16 13 C -0.08 -2.41 5.25 -19.88 -0.10 -2.52 16 14 C -0.12 -3.39 9.70 22.29 0.22 -3.17 16 15 C -0.10 -2.46 10.04 22.25 0.22 -2.23 16 16 C -0.13 -3.46 8.66 22.39 0.19 -3.26 16 17 C 0.14 3.48 6.28 38.15 0.24 3.72 16 18 N -0.65 -11.98 5.34 -303.51 -1.62 -13.61 16 19 C 0.51 11.04 6.92 87.66 0.61 11.65 16 20 O -0.55 -17.41 14.23 15.43 0.22 -17.19 16 21 C 0.07 0.95 3.87 30.51 0.12 1.07 16 22 H 0.13 1.09 8.14 -2.39 -0.02 1.07 16 23 C -0.15 -1.23 6.56 32.05 0.21 -1.02 16 24 C -0.14 -0.85 7.02 31.85 0.22 -0.63 16 25 C 0.04 0.44 7.79 72.45 0.56 1.01 16 26 O -0.39 -7.93 10.61 -130.50 -1.38 -9.32 16 27 C -0.13 -3.33 9.61 22.39 0.22 -3.12 16 28 H 0.27 15.14 8.29 -92.71 -0.77 14.37 16 29 H 0.39 15.53 8.44 -92.71 -0.78 14.75 16 30 H 0.04 1.85 8.09 -2.39 -0.02 1.83 16 31 H 0.05 1.88 8.08 -2.39 -0.02 1.86 16 32 H 0.13 3.47 8.06 -2.91 -0.02 3.45 16 33 H 0.15 2.94 8.06 -2.91 -0.02 2.92 16 34 H 0.13 3.51 6.41 -2.91 -0.02 3.49 16 35 H 0.43 4.52 8.82 -92.71 -0.82 3.70 16 36 H 0.07 0.84 8.05 -2.38 -0.02 0.82 16 37 H 0.13 0.31 8.14 -2.39 -0.02 0.29 16 38 H 0.10 0.39 8.14 -2.39 -0.02 0.37 16 39 H 0.10 0.23 8.14 -2.39 -0.02 0.21 16 40 H 0.07 0.82 8.14 -2.39 -0.02 0.80 16 41 H 0.09 0.75 8.14 -2.39 -0.02 0.73 16 42 H 0.14 3.30 8.06 -2.91 -0.02 3.27 16 Total: -1.00 -86.01 360.81 0.87 -85.14 By element: Atomic # 1 Polarization: 30.87 SS G_CDS: -0.53 Total: 30.34 kcal Atomic # 6 Polarization: 6.34 SS G_CDS: 4.58 Total: 10.92 kcal Atomic # 7 Polarization: -95.74 SS G_CDS: -3.97 Total: -99.72 kcal Atomic # 8 Polarization: -67.91 SS G_CDS: -1.23 Total: -69.14 kcal Atomic # 14 Polarization: 40.43 SS G_CDS: 2.03 Total: 42.46 kcal Total: -86.01 0.87 -85.14 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000219738883.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.067 kcal (2) G-P(sol) polarization free energy of solvation -86.010 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.077 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.867 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.143 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.210 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds