Wall clock time and date at job start Tue Mar 31 2020 12:04:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30836 * 1 3 3 Si 1.86795 * 119.99955 * 2 1 4 4 H 1.48504 * 109.47010 * 180.02562 * 3 2 1 5 5 H 1.48508 * 109.47116 * 299.99921 * 3 2 1 6 6 H 1.48492 * 109.47330 * 60.00217 * 3 2 1 7 7 C 1.39931 * 119.99763 * 180.02562 * 2 1 3 8 8 H 1.08008 * 119.99871 * 192.07160 * 7 2 1 9 9 C 1.41404 * 120.00610 * 12.06289 * 7 2 1 10 10 C 1.40772 * 120.21291 * 207.53162 * 9 7 2 11 11 C 1.37653 * 119.88496 * 179.97438 * 10 9 7 12 12 C 1.38526 * 120.31819 * 359.97438 * 11 10 9 13 13 C 1.39254 * 120.43079 * 359.76382 * 12 11 10 14 14 N 1.39957 * 119.94405 * 180.28076 * 13 12 11 15 15 C 1.34770 * 120.00136 * 35.83008 * 14 13 12 16 16 O 1.21586 * 120.00342 * 355.32233 * 15 14 13 17 17 N 1.34783 * 119.99939 * 175.31918 * 15 14 13 18 18 C 1.46923 * 120.62911 * 4.69754 * 17 15 14 19 19 C 1.53193 * 108.77661 * 233.58085 * 18 17 15 20 20 C 1.53045 * 109.31057 * 305.36531 * 19 18 17 21 21 C 1.53045 * 109.53754 * 61.36554 * 20 19 18 22 22 H 1.08998 * 109.49817 * 58.61751 * 21 20 19 23 23 C 1.50693 * 109.49799 * 178.68282 * 21 20 19 24 24 O 1.20833 * 119.99876 * 0.02562 * 23 21 20 25 25 O 1.34222 * 120.00231 * 179.97438 * 23 21 20 26 26 C 1.46929 * 120.63087 * 184.41109 * 17 15 14 27 27 C 1.38274 * 120.10229 * 0.51820 * 13 12 11 28 28 H 0.96999 * 119.99646 * 359.97438 * 1 2 3 29 29 H 1.08001 * 120.06028 * 359.95744 * 10 9 7 30 30 H 1.07994 * 119.83710 * 179.97438 * 11 10 9 31 31 H 1.07995 * 119.78845 * 180.02562 * 12 11 10 32 32 H 0.97003 * 119.99515 * 215.82484 * 14 13 12 33 33 H 1.09005 * 109.58891 * 353.36652 * 18 17 15 34 34 H 1.09001 * 109.58836 * 113.64885 * 18 17 15 35 35 H 1.09002 * 109.49451 * 65.31523 * 19 18 17 36 36 H 1.08997 * 109.49851 * 185.37992 * 19 18 17 37 37 H 1.09003 * 109.45406 * 181.38113 * 20 19 18 38 38 H 1.08999 * 109.45674 * 301.34135 * 20 19 18 39 39 H 0.96701 * 117.00417 * 179.97438 * 25 23 21 40 40 H 1.08996 * 109.58428 * 246.20431 * 26 17 15 41 41 H 1.09002 * 109.58342 * 6.63241 * 26 17 15 42 42 H 1.08003 * 120.15490 * 179.74112 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3084 0.0000 0.0000 3 14 2.2423 1.6177 0.0000 4 1 3.7024 1.3463 -0.0006 5 1 1.8836 2.3964 -1.2126 6 1 1.8837 2.3964 1.2124 7 6 2.0080 -1.2119 -0.0005 8 1 3.0701 -1.2223 0.1951 9 6 1.3244 -2.4229 -0.2570 10 6 1.8042 -3.6339 0.2769 11 6 1.1332 -4.8087 0.0234 12 6 -0.0130 -4.8056 -0.7546 13 6 -0.5023 -3.6145 -1.2848 14 7 -1.6645 -3.6223 -2.0646 15 6 -2.6704 -4.4681 -1.7664 16 8 -2.5354 -5.2827 -0.8739 17 7 -3.8262 -4.4110 -2.4574 18 6 -3.9685 -3.5038 -3.6043 19 6 -5.2095 -2.6312 -3.3917 20 6 -6.4240 -3.5297 -3.1465 21 6 -6.1973 -4.3631 -1.8831 22 1 -6.0346 -3.6995 -1.0338 23 6 -7.4069 -5.2237 -1.6245 24 8 -8.3536 -5.1762 -2.3739 25 8 -7.4325 -6.0438 -0.5622 26 6 -4.9655 -5.2594 -2.0821 27 6 0.1611 -2.4250 -1.0462 28 1 -0.4849 0.8401 0.0004 29 1 2.6973 -3.6412 0.8841 30 1 1.5021 -5.7374 0.4330 31 1 -0.5329 -5.7322 -0.9477 32 1 -1.7459 -3.0188 -2.8196 33 1 -3.0849 -2.8699 -3.6808 34 1 -4.0808 -4.0859 -4.5190 35 1 -5.0556 -1.9839 -2.5283 36 1 -5.3811 -2.0206 -4.2782 37 1 -7.3129 -2.9118 -3.0193 38 1 -6.5625 -4.1937 -3.9997 39 1 -8.2301 -6.5760 -0.4375 40 1 -5.1600 -5.9816 -2.8749 41 1 -4.7400 -5.7843 -1.1538 42 1 -0.2153 -1.5013 -1.4605 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000263569381.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:04:41 Heat of formation + Delta-G solvation = -94.990099 kcal Electronic energy + Delta-G solvation = -26467.507821 eV Core-core repulsion = 22605.210016 eV Total energy + Delta-G solvation = -3862.297805 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -40.95322 -40.07508 -38.00805 -36.88648 -36.31492 -34.36996 -33.47965 -32.72478 -31.59921 -29.48661 -28.33828 -25.57587 -25.22202 -24.86533 -22.44187 -21.31055 -21.10910 -20.21435 -19.23605 -18.37616 -18.13630 -17.39308 -16.68987 -16.35472 -15.73180 -15.34291 -15.12303 -14.64566 -14.58501 -14.48433 -14.29507 -13.69842 -13.54603 -13.36756 -12.88746 -12.85550 -12.68915 -12.32855 -11.92776 -11.72394 -11.71176 -11.32772 -11.26630 -11.18409 -11.04735 -10.91111 -10.81020 -10.69047 -10.44558 -9.98598 -9.88610 -9.50317 -9.26964 -8.89485 -8.66854 -7.31152 -6.92040 -6.66439 -4.35959 1.88185 2.59029 2.74626 2.88791 2.98293 3.08171 3.13708 3.24300 3.62823 3.95636 4.14023 4.32543 4.51143 4.60546 4.68766 4.72803 4.92137 5.10232 5.18688 5.35192 5.49187 5.56475 5.58351 5.67399 5.71494 5.80090 6.01779 6.22730 6.27170 6.41618 6.71333 6.72834 6.81819 6.99709 7.09789 7.23219 7.34891 7.62105 7.66313 7.83293 8.00129 8.07187 8.27416 8.41061 8.63336 8.92378 8.92713 9.03989 10.25258 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.017237 B = 0.003191 C = 0.002892 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1624.028111 B = 8771.510123 C = 9678.873157 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.804 5.804 2 C 0.074 3.926 3 Si 0.908 3.092 4 H -0.261 1.261 5 H -0.274 1.274 6 H -0.276 1.276 7 C -0.464 4.464 8 H 0.077 0.923 9 C 0.119 3.881 10 C -0.225 4.225 11 C -0.090 4.090 12 C -0.221 4.221 13 C 0.156 3.844 14 N -0.675 5.675 15 C 0.706 3.294 16 O -0.569 6.569 17 N -0.633 5.633 18 C 0.108 3.892 19 C -0.135 4.135 20 C -0.102 4.102 21 C -0.099 4.099 22 H 0.116 0.884 23 C 0.490 3.510 24 O -0.516 6.516 25 O -0.510 6.510 26 C 0.145 3.855 27 C -0.179 4.179 28 H 0.277 0.723 29 H 0.093 0.907 30 H 0.091 0.909 31 H 0.108 0.892 32 H 0.395 0.605 33 H 0.083 0.917 34 H 0.071 0.929 35 H 0.074 0.926 36 H 0.083 0.917 37 H 0.075 0.925 38 H 0.074 0.926 39 H 0.410 0.590 40 H 0.068 0.932 41 H 0.108 0.892 42 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.972 -4.183 -7.638 15.624 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.431 5.431 2 C -0.142 4.142 3 Si 0.733 3.267 4 H -0.185 1.185 5 H -0.199 1.199 6 H -0.201 1.201 7 C -0.494 4.494 8 H 0.095 0.905 9 C 0.116 3.884 10 C -0.245 4.245 11 C -0.109 4.109 12 C -0.243 4.243 13 C 0.064 3.936 14 N -0.323 5.323 15 C 0.409 3.591 16 O -0.445 6.445 17 N -0.372 5.372 18 C -0.016 4.016 19 C -0.174 4.174 20 C -0.139 4.139 21 C -0.119 4.119 22 H 0.134 0.866 23 C 0.331 3.669 24 O -0.404 6.404 25 O -0.322 6.322 26 C 0.021 3.979 27 C -0.201 4.201 28 H 0.087 0.913 29 H 0.111 0.889 30 H 0.109 0.891 31 H 0.126 0.874 32 H 0.232 0.768 33 H 0.101 0.899 34 H 0.089 0.911 35 H 0.093 0.907 36 H 0.102 0.898 37 H 0.094 0.906 38 H 0.093 0.907 39 H 0.269 0.731 40 H 0.087 0.913 41 H 0.127 0.873 42 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -12.976 -4.364 -7.232 15.483 hybrid contribution -0.449 0.890 -0.187 1.015 sum -13.426 -3.474 -7.419 15.727 Atomic orbital electron populations 1.69824 1.07360 1.28598 1.37280 1.25862 0.94787 1.01094 0.92449 0.86262 0.80885 0.81134 0.78398 1.18520 1.19918 1.20113 1.19547 0.96223 0.90452 1.43209 0.90453 1.17354 0.90803 0.92184 0.88073 1.21078 1.03116 0.93336 1.06937 1.20448 0.95401 0.96596 0.98455 1.20491 0.99381 0.96165 1.08219 1.17461 0.85659 0.94583 0.95890 1.42726 1.15973 1.40382 1.33244 1.15818 0.79783 0.81961 0.81586 1.90917 1.80775 1.39352 1.33449 1.47216 1.12466 1.44335 1.33192 1.21690 0.98830 0.92248 0.88826 1.21954 0.94033 0.97995 1.03374 1.21424 0.98632 0.98154 0.95737 1.21607 0.91252 0.97073 1.01988 0.86594 1.23317 0.88539 0.77705 0.77300 1.90717 1.37487 1.65248 1.46969 1.84598 1.47521 1.53227 1.46825 1.21301 0.82469 0.91025 1.03132 1.21091 1.00505 0.94522 1.03964 0.91266 0.88894 0.89062 0.87439 0.76810 0.89895 0.91085 0.90697 0.89819 0.90610 0.90706 0.73141 0.91345 0.87346 0.85840 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -20.46 10.83 55.55 0.60 -19.85 16 2 C 0.07 1.83 5.24 -17.34 -0.09 1.74 16 3 Si 0.91 18.46 29.58 -169.99 -5.03 13.43 16 4 H -0.26 -5.27 7.11 56.52 0.40 -4.87 16 5 H -0.27 -5.43 7.11 56.52 0.40 -5.03 16 6 H -0.28 -5.57 7.11 56.52 0.40 -5.17 16 7 C -0.46 -12.16 9.06 -37.74 -0.34 -12.51 16 8 H 0.08 1.96 7.88 -52.48 -0.41 1.55 16 9 C 0.12 3.15 5.56 -106.85 -0.59 2.55 16 10 C -0.22 -5.59 9.79 -38.84 -0.38 -5.97 16 11 C -0.09 -2.12 10.02 -39.69 -0.40 -2.52 16 12 C -0.22 -5.30 8.70 -39.10 -0.34 -5.64 16 13 C 0.16 3.65 6.28 -83.76 -0.53 3.13 16 14 N -0.68 -12.79 5.25 -14.27 -0.07 -12.86 16 15 C 0.71 13.05 8.14 -86.92 -0.71 12.34 16 16 O -0.57 -12.67 13.24 5.29 0.07 -12.60 16 17 N -0.63 -8.51 2.97 -178.23 -0.53 -9.04 16 18 C 0.11 1.06 6.43 -3.71 -0.02 1.03 16 19 C -0.14 -1.14 6.08 -26.61 -0.16 -1.30 16 20 C -0.10 -0.90 4.46 -26.68 -0.12 -1.02 16 21 C -0.10 -1.00 2.79 -91.43 -0.26 -1.26 16 22 H 0.12 1.22 8.14 -51.93 -0.42 0.80 16 23 C 0.49 5.04 7.63 36.00 0.27 5.32 16 24 O -0.52 -6.44 16.74 -18.76 -0.31 -6.75 16 25 O -0.51 -4.41 13.36 -39.24 -0.52 -4.94 16 26 C 0.14 1.71 5.66 -3.48 -0.02 1.69 16 27 C -0.18 -4.52 8.58 -38.69 -0.33 -4.85 16 28 H 0.28 6.41 8.30 -40.82 -0.34 6.07 16 29 H 0.09 2.16 8.06 -52.49 -0.42 1.74 16 30 H 0.09 1.89 8.06 -52.49 -0.42 1.47 16 31 H 0.11 2.58 6.26 -52.49 -0.33 2.25 16 32 H 0.40 6.18 6.28 -40.82 -0.26 5.93 16 33 H 0.08 0.80 5.57 -51.93 -0.29 0.51 16 34 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 35 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 36 H 0.08 0.55 8.14 -51.93 -0.42 0.12 16 37 H 0.08 0.66 8.07 -51.93 -0.42 0.24 16 38 H 0.07 0.65 8.13 -51.93 -0.42 0.23 16 39 H 0.41 1.69 9.10 45.56 0.41 2.11 16 40 H 0.07 0.71 8.14 -51.93 -0.42 0.28 16 41 H 0.11 1.50 7.03 -51.93 -0.37 1.14 16 42 H 0.12 3.15 6.17 -52.48 -0.32 2.83 16 LS Contribution 347.27 15.07 5.23 5.23 Total: -1.00 -32.92 347.27 -9.07 -42.00 By element: Atomic # 1 Polarization: 17.14 SS G_CDS: -4.50 Total: 12.65 kcal Atomic # 6 Polarization: -3.25 SS G_CDS: -4.02 Total: -7.27 kcal Atomic # 7 Polarization: -41.75 SS G_CDS: 0.00 Total: -41.75 kcal Atomic # 8 Polarization: -23.52 SS G_CDS: -0.77 Total: -24.29 kcal Atomic # 14 Polarization: 18.46 SS G_CDS: -5.03 Total: 13.43 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -32.92 -9.07 -42.00 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000263569381.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.995 kcal (2) G-P(sol) polarization free energy of solvation -32.920 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.915 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.075 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.995 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.990 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds