Wall clock time and date at job start Tue Mar 31 2020 12:04:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30836 * 1 3 3 Si 1.86795 * 119.99955 * 2 1 4 4 H 1.48504 * 109.47010 * 180.02562 * 3 2 1 5 5 H 1.48508 * 109.47116 * 299.99921 * 3 2 1 6 6 H 1.48492 * 109.47330 * 60.00217 * 3 2 1 7 7 C 1.39931 * 119.99763 * 180.02562 * 2 1 3 8 8 H 1.08008 * 119.99871 * 192.07160 * 7 2 1 9 9 C 1.41404 * 120.00610 * 12.06289 * 7 2 1 10 10 C 1.40772 * 120.21291 * 207.53162 * 9 7 2 11 11 C 1.37653 * 119.88496 * 179.97438 * 10 9 7 12 12 C 1.38526 * 120.31819 * 359.97438 * 11 10 9 13 13 C 1.39254 * 120.43079 * 359.76382 * 12 11 10 14 14 N 1.39957 * 119.94405 * 180.28076 * 13 12 11 15 15 C 1.34770 * 120.00136 * 35.83008 * 14 13 12 16 16 O 1.21586 * 120.00342 * 355.32233 * 15 14 13 17 17 N 1.34783 * 119.99939 * 175.31918 * 15 14 13 18 18 C 1.46923 * 120.62911 * 4.69754 * 17 15 14 19 19 C 1.53193 * 108.77661 * 233.58085 * 18 17 15 20 20 C 1.53045 * 109.31057 * 305.36531 * 19 18 17 21 21 C 1.53045 * 109.53754 * 61.36554 * 20 19 18 22 22 H 1.08998 * 109.49817 * 58.61751 * 21 20 19 23 23 C 1.50693 * 109.49799 * 178.68282 * 21 20 19 24 24 O 1.20833 * 119.99876 * 0.02562 * 23 21 20 25 25 O 1.34222 * 120.00231 * 179.97438 * 23 21 20 26 26 C 1.46929 * 120.63087 * 184.41109 * 17 15 14 27 27 C 1.38274 * 120.10229 * 0.51820 * 13 12 11 28 28 H 0.96999 * 119.99646 * 359.97438 * 1 2 3 29 29 H 1.08001 * 120.06028 * 359.95744 * 10 9 7 30 30 H 1.07994 * 119.83710 * 179.97438 * 11 10 9 31 31 H 1.07995 * 119.78845 * 180.02562 * 12 11 10 32 32 H 0.97003 * 119.99515 * 215.82484 * 14 13 12 33 33 H 1.09005 * 109.58891 * 353.36652 * 18 17 15 34 34 H 1.09001 * 109.58836 * 113.64885 * 18 17 15 35 35 H 1.09002 * 109.49451 * 65.31523 * 19 18 17 36 36 H 1.08997 * 109.49851 * 185.37992 * 19 18 17 37 37 H 1.09003 * 109.45406 * 181.38113 * 20 19 18 38 38 H 1.08999 * 109.45674 * 301.34135 * 20 19 18 39 39 H 0.96701 * 117.00417 * 179.97438 * 25 23 21 40 40 H 1.08996 * 109.58428 * 246.20431 * 26 17 15 41 41 H 1.09002 * 109.58342 * 6.63241 * 26 17 15 42 42 H 1.08003 * 120.15490 * 179.74112 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3084 0.0000 0.0000 3 14 2.2423 1.6177 0.0000 4 1 3.7024 1.3463 -0.0006 5 1 1.8836 2.3964 -1.2126 6 1 1.8837 2.3964 1.2124 7 6 2.0080 -1.2119 -0.0005 8 1 3.0701 -1.2223 0.1951 9 6 1.3244 -2.4229 -0.2570 10 6 1.8042 -3.6339 0.2769 11 6 1.1332 -4.8087 0.0234 12 6 -0.0130 -4.8056 -0.7546 13 6 -0.5023 -3.6145 -1.2848 14 7 -1.6645 -3.6223 -2.0646 15 6 -2.6704 -4.4681 -1.7664 16 8 -2.5354 -5.2827 -0.8739 17 7 -3.8262 -4.4110 -2.4574 18 6 -3.9685 -3.5038 -3.6043 19 6 -5.2095 -2.6312 -3.3917 20 6 -6.4240 -3.5297 -3.1465 21 6 -6.1973 -4.3631 -1.8831 22 1 -6.0346 -3.6995 -1.0338 23 6 -7.4069 -5.2237 -1.6245 24 8 -8.3536 -5.1762 -2.3739 25 8 -7.4325 -6.0438 -0.5622 26 6 -4.9655 -5.2594 -2.0821 27 6 0.1611 -2.4250 -1.0462 28 1 -0.4849 0.8401 0.0004 29 1 2.6973 -3.6412 0.8841 30 1 1.5021 -5.7374 0.4330 31 1 -0.5329 -5.7322 -0.9477 32 1 -1.7459 -3.0188 -2.8196 33 1 -3.0849 -2.8699 -3.6808 34 1 -4.0808 -4.0859 -4.5190 35 1 -5.0556 -1.9839 -2.5283 36 1 -5.3811 -2.0206 -4.2782 37 1 -7.3129 -2.9118 -3.0193 38 1 -6.5625 -4.1937 -3.9997 39 1 -8.2301 -6.5760 -0.4375 40 1 -5.1600 -5.9816 -2.8749 41 1 -4.7400 -5.7843 -1.1538 42 1 -0.2153 -1.5013 -1.4605 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000263569381.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:04:40 Heat of formation + Delta-G solvation = -115.550307 kcal Electronic energy + Delta-G solvation = -26468.399379 eV Core-core repulsion = 22605.210016 eV Total energy + Delta-G solvation = -3863.189363 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.99088 -41.25160 -39.45819 -38.26599 -37.15582 -36.04275 -35.18016 -33.91578 -32.47821 -31.39758 -30.06000 -27.14483 -26.50149 -25.89844 -23.34573 -23.03839 -22.67551 -21.35759 -20.56851 -19.50598 -19.21040 -19.01274 -17.71229 -17.55256 -16.99902 -16.86640 -16.51446 -16.29931 -16.01221 -15.47494 -15.30684 -15.08874 -14.59489 -14.52708 -14.39532 -14.26756 -14.00711 -13.63396 -13.53595 -12.94177 -12.76462 -12.71034 -12.61402 -12.53791 -12.20477 -12.06913 -12.03563 -11.78209 -11.69972 -11.68855 -11.61710 -11.24118 -11.01882 -10.66208 -9.80186 -9.25169 -8.72595 -8.51545 -6.33487 0.91951 1.03287 1.08548 1.42909 1.50542 1.56468 1.57339 2.09296 2.14007 2.25774 2.80716 2.90482 3.50964 3.65185 3.75665 3.81748 3.95725 4.09728 4.37385 4.41781 4.46131 4.52037 4.67935 4.70290 4.80918 4.82930 4.87925 4.98375 5.06632 5.15911 5.19852 5.23075 5.31398 5.37179 5.47327 5.55343 5.72963 5.84147 6.00101 6.13080 6.15469 6.41157 6.70609 6.92102 6.94285 6.98903 7.04162 7.52773 8.41074 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.017237 B = 0.003191 C = 0.002892 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1624.028111 B = 8771.510123 C = 9678.873157 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.831 5.831 2 C 0.035 3.965 3 Si 0.984 3.016 4 H -0.260 1.260 5 H -0.262 1.262 6 H -0.270 1.270 7 C -0.497 4.497 8 H 0.076 0.924 9 C 0.091 3.909 10 C -0.245 4.245 11 C -0.088 4.088 12 C -0.234 4.234 13 C 0.164 3.836 14 N -0.671 5.671 15 C 0.702 3.298 16 O -0.612 6.612 17 N -0.622 5.622 18 C 0.099 3.901 19 C -0.128 4.128 20 C -0.097 4.097 21 C -0.095 4.095 22 H 0.109 0.891 23 C 0.498 3.502 24 O -0.537 6.537 25 O -0.513 6.513 26 C 0.144 3.856 27 C -0.196 4.196 28 H 0.286 0.714 29 H 0.101 0.899 30 H 0.118 0.882 31 H 0.107 0.893 32 H 0.411 0.589 33 H 0.084 0.916 34 H 0.098 0.902 35 H 0.061 0.939 36 H 0.112 0.888 37 H 0.079 0.921 38 H 0.082 0.918 39 H 0.429 0.571 40 H 0.089 0.911 41 H 0.084 0.916 42 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.941 -3.343 -8.889 16.868 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.458 5.458 2 C -0.178 4.178 3 Si 0.805 3.195 4 H -0.184 1.184 5 H -0.187 1.187 6 H -0.196 1.196 7 C -0.527 4.527 8 H 0.094 0.906 9 C 0.088 3.912 10 C -0.265 4.265 11 C -0.107 4.107 12 C -0.255 4.255 13 C 0.070 3.930 14 N -0.320 5.320 15 C 0.404 3.596 16 O -0.492 6.492 17 N -0.360 5.360 18 C -0.023 4.023 19 C -0.166 4.166 20 C -0.134 4.134 21 C -0.115 4.115 22 H 0.127 0.873 23 C 0.341 3.659 24 O -0.427 6.427 25 O -0.327 6.327 26 C 0.021 3.979 27 C -0.218 4.218 28 H 0.096 0.904 29 H 0.119 0.881 30 H 0.136 0.864 31 H 0.125 0.875 32 H 0.250 0.750 33 H 0.102 0.898 34 H 0.116 0.884 35 H 0.079 0.921 36 H 0.130 0.870 37 H 0.098 0.902 38 H 0.101 0.899 39 H 0.291 0.709 40 H 0.107 0.893 41 H 0.103 0.897 42 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -14.007 -3.535 -8.522 16.772 hybrid contribution -0.258 0.530 0.213 0.627 sum -14.266 -3.005 -8.309 16.780 Atomic orbital electron populations 1.69876 1.08738 1.30083 1.37054 1.26697 0.95583 1.04240 0.91326 0.85133 0.79279 0.76298 0.78800 1.18382 1.18662 1.19553 1.19796 0.96418 0.91539 1.44907 0.90612 1.17758 0.91667 0.93083 0.88685 1.21249 1.03918 0.93513 1.07776 1.20746 0.94922 0.97325 0.97724 1.20650 0.99714 0.96365 1.08810 1.17483 0.86438 0.93792 0.95312 1.42563 1.15109 1.41013 1.33322 1.15982 0.80753 0.81288 0.81557 1.90880 1.81822 1.40988 1.35488 1.47230 1.11042 1.44520 1.33162 1.22040 0.99707 0.92286 0.88221 1.21926 0.92950 0.97604 1.04100 1.21416 0.98865 0.98084 0.95070 1.21557 0.90463 0.96813 1.02689 0.87302 1.23199 0.88071 0.77497 0.77178 1.90713 1.38200 1.65999 1.47788 1.84566 1.48923 1.53140 1.46043 1.21380 0.82368 0.91396 1.02771 1.21025 1.01046 0.94817 1.04923 0.90386 0.88085 0.86389 0.87519 0.75006 0.89813 0.88381 0.92063 0.87015 0.90215 0.89911 0.70857 0.89304 0.89715 0.86578 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -42.50 10.83 21.82 0.24 -42.26 16 2 C 0.04 1.74 5.24 85.25 0.45 2.19 16 3 Si 0.98 37.49 29.58 68.60 2.03 39.52 16 4 H -0.26 -9.77 7.11 99.48 0.71 -9.06 16 5 H -0.26 -9.43 7.11 99.48 0.71 -8.72 16 6 H -0.27 -10.03 7.11 99.48 0.71 -9.32 16 7 C -0.50 -26.55 9.06 23.46 0.21 -26.33 16 8 H 0.08 3.92 7.88 -2.91 -0.02 3.90 16 9 C 0.09 4.94 5.56 -21.31 -0.12 4.82 16 10 C -0.24 -12.40 9.79 22.75 0.22 -12.18 16 11 C -0.09 -4.19 10.02 22.20 0.22 -3.96 16 12 C -0.23 -11.35 8.70 22.58 0.20 -11.15 16 13 C 0.16 7.76 6.28 38.10 0.24 8.00 16 14 N -0.67 -25.40 5.25 -317.33 -1.66 -27.07 16 15 C 0.70 25.89 8.14 179.05 1.46 27.35 16 16 O -0.61 -27.73 13.24 -3.99 -0.05 -27.78 16 17 N -0.62 -16.03 2.97 -836.05 -2.48 -18.51 16 18 C 0.10 1.72 6.43 86.36 0.56 2.27 16 19 C -0.13 -1.82 6.08 30.67 0.19 -1.63 16 20 C -0.10 -1.47 4.46 30.62 0.14 -1.33 16 21 C -0.10 -1.80 2.79 -11.32 -0.03 -1.83 16 22 H 0.11 2.23 8.14 -2.39 -0.02 2.21 16 23 C 0.50 9.55 7.63 71.23 0.54 10.09 16 24 O -0.54 -12.49 16.74 21.94 0.37 -12.12 16 25 O -0.51 -8.24 13.36 -51.34 -0.69 -8.92 16 26 C 0.14 3.25 5.66 86.51 0.49 3.74 16 27 C -0.20 -10.13 8.58 22.85 0.20 -9.94 16 28 H 0.29 13.15 8.30 -92.71 -0.77 12.38 16 29 H 0.10 4.79 8.06 -2.91 -0.02 4.77 16 30 H 0.12 4.81 8.06 -2.91 -0.02 4.79 16 31 H 0.11 5.18 6.26 -2.91 -0.02 5.16 16 32 H 0.41 12.63 6.28 -92.71 -0.58 12.05 16 33 H 0.08 1.45 5.57 -2.38 -0.01 1.44 16 34 H 0.10 1.25 8.14 -2.39 -0.02 1.23 16 35 H 0.06 1.07 8.14 -2.39 -0.02 1.05 16 36 H 0.11 1.04 8.14 -2.39 -0.02 1.02 16 37 H 0.08 1.20 8.07 -2.39 -0.02 1.18 16 38 H 0.08 1.17 8.13 -2.39 -0.02 1.15 16 39 H 0.43 2.89 9.10 -74.06 -0.67 2.21 16 40 H 0.09 1.66 8.14 -2.39 -0.02 1.64 16 41 H 0.08 2.36 7.03 -2.39 -0.02 2.34 16 42 H 0.12 6.07 6.17 -2.91 -0.02 6.06 16 Total: -1.00 -72.09 347.27 2.53 -69.56 By element: Atomic # 1 Polarization: 37.66 SS G_CDS: -0.18 Total: 37.49 kcal Atomic # 6 Polarization: -14.86 SS G_CDS: 4.95 Total: -9.90 kcal Atomic # 7 Polarization: -83.93 SS G_CDS: -3.91 Total: -87.84 kcal Atomic # 8 Polarization: -48.46 SS G_CDS: -0.37 Total: -48.83 kcal Atomic # 14 Polarization: 37.49 SS G_CDS: 2.03 Total: 39.52 kcal Total: -72.09 2.53 -69.56 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000263569381.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.990 kcal (2) G-P(sol) polarization free energy of solvation -72.088 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.079 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.528 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.560 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.550 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds