Wall clock time and date at job start Tue Mar 31 2020 12:04:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30827 * 1 3 3 Si 1.86797 * 120.00313 * 2 1 4 4 H 1.48501 * 109.47127 * 269.18791 * 3 2 1 5 5 H 1.48504 * 109.46952 * 29.18345 * 3 2 1 6 6 H 1.48497 * 109.47515 * 149.18425 * 3 2 1 7 7 C 1.39938 * 119.99716 * 179.97438 * 2 1 3 8 8 H 1.07992 * 119.99960 * 350.78447 * 7 2 1 9 9 C 1.41409 * 119.99665 * 170.78467 * 7 2 1 10 10 C 1.40783 * 120.21288 * 326.48660 * 9 7 2 11 11 C 1.37638 * 119.88263 * 179.97438 * 10 9 7 12 12 C 1.38532 * 120.32226 * 0.02562 * 11 10 9 13 13 C 1.39240 * 120.43190 * 0.02562 * 12 11 10 14 14 N 1.39952 * 119.94561 * 179.97438 * 13 12 11 15 15 C 1.34777 * 119.99855 * 142.06758 * 14 13 12 16 16 O 1.21591 * 119.99917 * 4.71970 * 15 14 13 17 17 N 1.34775 * 120.00412 * 184.71871 * 15 14 13 18 18 C 1.47214 * 120.80974 * 354.61817 * 17 15 14 19 19 C 1.53194 * 108.85056 * 126.33695 * 18 17 15 20 20 C 1.53040 * 109.31248 * 54.65556 * 19 18 17 21 21 C 1.53041 * 109.53721 * 298.63111 * 20 19 18 22 22 H 1.09006 * 109.52400 * 301.40237 * 21 20 19 23 23 C 1.50694 * 109.49934 * 181.31881 * 21 20 19 24 24 O 1.20829 * 119.99967 * 0.16642 * 23 21 20 25 25 O 1.34228 * 120.00274 * 180.16244 * 23 21 20 26 26 C 1.46926 * 120.63662 * 174.47863 * 17 15 14 27 27 C 1.38274 * 120.10419 * 0.23242 * 13 12 11 28 28 H 0.97002 * 120.00296 * 0.02562 * 1 2 3 29 29 H 1.08000 * 120.05363 * 359.97438 * 10 9 7 30 30 H 1.08003 * 119.83290 * 179.97438 * 11 10 9 31 31 H 1.08005 * 119.78161 * 179.97438 * 12 11 10 32 32 H 0.96999 * 120.00268 * 322.05916 * 14 13 12 33 33 H 1.08999 * 109.53341 * 6.53703 * 18 17 15 34 34 H 1.08999 * 109.56023 * 246.15756 * 18 17 15 35 35 H 1.08994 * 109.49720 * 294.70059 * 19 18 17 36 36 H 1.09005 * 109.49381 * 174.60501 * 19 18 17 37 37 H 1.08999 * 109.45735 * 178.61230 * 20 19 18 38 38 H 1.08992 * 109.45123 * 58.64354 * 20 19 18 39 39 H 0.96700 * 117.00160 * 180.02562 * 25 23 21 40 40 H 1.08999 * 109.58869 * 113.81959 * 26 17 15 41 41 H 1.08996 * 109.58287 * 353.53419 * 26 17 15 42 42 H 1.08000 * 120.16257 * 179.72019 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2423 1.6177 0.0000 4 1 2.5071 2.0364 -1.3999 5 1 1.4313 2.6576 0.6827 6 1 3.5312 1.4452 0.7172 7 6 2.0079 -1.2119 0.0005 8 1 1.4783 -2.1410 0.1507 9 6 3.4083 -1.2199 -0.1956 10 6 4.0110 -0.2670 -1.0385 11 6 5.3748 -0.2806 -1.2241 12 6 6.1581 -1.2283 -0.5858 13 6 5.5757 -2.1776 0.2500 14 7 6.3766 -3.1307 0.8894 15 6 6.0949 -3.5101 2.1516 16 8 5.0968 -3.0898 2.7043 17 7 6.9195 -4.3554 2.8012 18 6 8.0675 -4.9673 2.1121 19 6 9.3375 -4.6870 2.9215 20 6 9.1384 -5.1712 4.3596 21 6 7.9782 -4.4066 5.0011 22 1 8.1922 -3.3379 4.9834 23 6 7.8037 -4.8611 6.4272 24 8 8.5343 -5.7075 6.8852 25 8 6.8367 -4.3256 7.1888 26 6 6.6927 -4.6837 4.2152 27 6 4.2068 -2.1835 0.4449 28 1 -0.4851 0.8400 -0.0004 29 1 3.4044 0.4735 -1.5386 30 1 5.8363 0.4506 -1.8713 31 1 7.2273 -1.2313 -0.7380 32 1 7.1344 -3.5183 0.4242 33 1 8.1666 -4.5363 1.1158 34 1 7.9145 -6.0436 2.0333 35 1 9.5390 -3.6158 2.9230 36 1 10.1789 -5.2153 2.4729 37 1 10.0495 -4.9953 4.9314 38 1 8.9124 -6.2375 4.3555 39 1 6.7639 -4.6487 8.0973 40 1 6.4276 -5.7369 4.3079 41 1 5.8842 -4.0675 4.6082 42 1 3.7536 -2.9222 1.0894 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000263569382.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:04:45 Heat of formation + Delta-G solvation = -91.202209 kcal Electronic energy + Delta-G solvation = -26434.264575 eV Core-core repulsion = 22572.131025 eV Total energy + Delta-G solvation = -3862.133550 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.03499 -40.18529 -38.21179 -37.07314 -36.36909 -34.60551 -33.39302 -32.81419 -31.72384 -30.27028 -28.60089 -25.71233 -25.24523 -24.89917 -22.55594 -21.76475 -20.84676 -20.47370 -19.39815 -18.45917 -18.28796 -17.58018 -16.74543 -16.35263 -15.90175 -15.75185 -15.24698 -14.83829 -14.64445 -14.50637 -14.37946 -13.90786 -13.67793 -13.49099 -13.11235 -12.93715 -12.69570 -12.52523 -12.00507 -11.99748 -11.77158 -11.60430 -11.43194 -11.37119 -11.00860 -10.99785 -10.84415 -10.64835 -10.62765 -9.97438 -9.84844 -9.62648 -9.12628 -9.04737 -8.76759 -7.60790 -7.13567 -6.81579 -4.42424 1.82873 2.44043 2.57297 2.66413 2.86120 3.16596 3.29089 3.38359 3.47237 3.96172 4.07296 4.22549 4.42585 4.48432 4.58539 4.60505 4.82920 5.00494 5.08360 5.24346 5.39733 5.44739 5.46250 5.48622 5.58953 5.71959 5.89258 5.98227 6.18416 6.18920 6.27692 6.41946 6.61056 6.70548 6.85031 6.97899 7.28244 7.46200 7.57512 7.57823 7.63896 7.94800 8.09558 8.20794 8.44524 8.70440 8.83047 8.90175 10.21490 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.018838 B = 0.003203 C = 0.002910 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1485.991711 B = 8739.409377 C = 9621.207928 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.819 5.819 2 C 0.081 3.919 3 Si 0.917 3.083 4 H -0.271 1.271 5 H -0.295 1.295 6 H -0.244 1.244 7 C -0.442 4.442 8 H 0.090 0.910 9 C 0.102 3.898 10 C -0.248 4.248 11 C -0.067 4.067 12 C -0.259 4.259 13 C 0.174 3.826 14 N -0.682 5.682 15 C 0.703 3.297 16 O -0.556 6.556 17 N -0.633 5.633 18 C 0.108 3.892 19 C -0.134 4.134 20 C -0.103 4.103 21 C -0.098 4.098 22 H 0.115 0.885 23 C 0.490 3.510 24 O -0.516 6.516 25 O -0.510 6.510 26 C 0.143 3.857 27 C -0.189 4.189 28 H 0.284 0.716 29 H 0.103 0.897 30 H 0.097 0.903 31 H 0.095 0.905 32 H 0.395 0.605 33 H 0.081 0.919 34 H 0.073 0.927 35 H 0.072 0.928 36 H 0.083 0.917 37 H 0.076 0.924 38 H 0.075 0.925 39 H 0.411 0.589 40 H 0.070 0.930 41 H 0.110 0.890 42 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.014 -8.708 7.292 21.296 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.445 5.445 2 C -0.136 4.136 3 Si 0.745 3.255 4 H -0.198 1.198 5 H -0.223 1.223 6 H -0.168 1.168 7 C -0.471 4.471 8 H 0.108 0.892 9 C 0.099 3.901 10 C -0.268 4.268 11 C -0.085 4.085 12 C -0.281 4.281 13 C 0.082 3.918 14 N -0.331 5.331 15 C 0.405 3.595 16 O -0.430 6.430 17 N -0.372 5.372 18 C -0.016 4.016 19 C -0.173 4.173 20 C -0.140 4.140 21 C -0.118 4.118 22 H 0.133 0.867 23 C 0.331 3.669 24 O -0.404 6.404 25 O -0.321 6.321 26 C 0.019 3.981 27 C -0.210 4.210 28 H 0.094 0.906 29 H 0.120 0.880 30 H 0.116 0.884 31 H 0.113 0.887 32 H 0.232 0.768 33 H 0.099 0.901 34 H 0.091 0.909 35 H 0.091 0.909 36 H 0.102 0.898 37 H 0.094 0.906 38 H 0.094 0.906 39 H 0.270 0.730 40 H 0.088 0.912 41 H 0.128 0.872 42 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges 17.215 -8.404 7.454 20.556 hybrid contribution 0.730 0.353 0.393 0.901 sum 17.946 -8.051 7.847 21.176 Atomic orbital electron populations 1.69639 1.07910 1.30008 1.36894 1.26112 0.94842 1.01519 0.91091 0.86278 0.80705 0.79587 0.78978 1.19756 1.22254 1.16774 1.19464 0.90498 0.95399 1.41767 0.89185 1.17659 0.93508 0.90395 0.88565 1.21128 0.94581 1.05258 1.05815 1.20354 0.93697 0.96650 0.97845 1.20065 0.97530 1.01061 1.09421 1.17300 0.89808 0.89564 0.95158 1.42730 1.33062 1.44086 1.13197 1.15841 0.82991 0.79140 0.81499 1.91015 1.26301 1.58574 1.67154 1.47270 1.29779 1.49011 1.11134 1.21743 0.85371 0.98628 0.95827 1.21951 0.97680 1.02608 0.95037 1.21426 0.96948 1.00203 0.95462 1.21507 0.99128 1.03677 0.87535 0.86706 1.23266 0.76660 0.78227 0.88722 1.90719 1.44345 1.31016 1.74303 1.84598 1.52890 1.65160 1.29453 1.21237 0.95580 1.01771 0.79555 1.21120 0.90584 1.04808 1.04512 0.90585 0.87982 0.88439 0.88718 0.76810 0.90065 0.90899 0.90910 0.89800 0.90569 0.90594 0.73017 0.91203 0.87198 0.86443 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -22.74 13.93 55.55 0.77 -21.97 16 2 C 0.08 2.23 5.49 -17.34 -0.10 2.14 16 3 Si 0.92 21.79 24.41 -169.99 -4.15 17.64 16 4 H -0.27 -6.13 6.57 56.52 0.37 -5.76 16 5 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 6 H -0.24 -6.01 6.74 56.52 0.38 -5.63 16 7 C -0.44 -12.54 9.61 -37.74 -0.36 -12.90 16 8 H 0.09 2.69 8.06 -52.49 -0.42 2.27 16 9 C 0.10 2.70 5.11 -106.84 -0.55 2.16 16 10 C -0.25 -6.06 7.00 -38.84 -0.27 -6.33 16 11 C -0.07 -1.42 10.02 -39.69 -0.40 -1.82 16 12 C -0.26 -5.20 9.97 -39.10 -0.39 -5.59 16 13 C 0.17 3.69 6.24 -83.76 -0.52 3.16 16 14 N -0.68 -11.33 5.25 -14.27 -0.07 -11.41 16 15 C 0.70 12.14 8.13 -86.92 -0.71 11.44 16 16 O -0.56 -12.32 13.41 5.29 0.07 -12.25 16 17 N -0.63 -7.73 2.98 -178.26 -0.53 -8.26 16 18 C 0.11 0.87 6.44 -3.55 -0.02 0.85 16 19 C -0.13 -0.88 6.08 -26.61 -0.16 -1.04 16 20 C -0.10 -0.78 4.46 -26.69 -0.12 -0.90 16 21 C -0.10 -0.89 2.78 -91.65 -0.25 -1.15 16 22 H 0.12 1.05 8.14 -51.93 -0.42 0.63 16 23 C 0.49 4.75 7.63 36.00 0.27 5.02 16 24 O -0.52 -6.14 16.74 -18.75 -0.31 -6.45 16 25 O -0.51 -4.25 13.35 -39.25 -0.52 -4.78 16 26 C 0.14 1.59 5.62 -3.71 -0.02 1.57 16 27 C -0.19 -4.69 8.42 -38.68 -0.33 -5.02 16 28 H 0.28 7.15 8.30 -40.82 -0.34 6.81 16 29 H 0.10 2.48 4.42 -52.49 -0.23 2.24 16 30 H 0.10 1.78 8.06 -52.48 -0.42 1.35 16 31 H 0.09 1.59 8.06 -52.48 -0.42 1.17 16 32 H 0.40 4.94 6.30 -40.82 -0.26 4.68 16 33 H 0.08 0.59 5.59 -51.93 -0.29 0.30 16 34 H 0.07 0.51 8.14 -51.93 -0.42 0.08 16 35 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 36 H 0.08 0.39 8.14 -51.93 -0.42 -0.03 16 37 H 0.08 0.57 8.07 -51.93 -0.42 0.15 16 38 H 0.08 0.58 8.13 -51.93 -0.42 0.16 16 39 H 0.41 1.62 9.10 45.56 0.41 2.04 16 40 H 0.07 0.70 8.14 -51.93 -0.42 0.27 16 41 H 0.11 1.49 7.04 -51.93 -0.37 1.12 16 42 H 0.12 3.07 6.45 -52.49 -0.34 2.74 16 LS Contribution 341.72 15.07 5.15 5.15 Total: -1.00 -34.41 341.72 -8.00 -42.41 By element: Atomic # 1 Polarization: 12.80 SS G_CDS: -4.48 Total: 8.32 kcal Atomic # 6 Polarization: -4.48 SS G_CDS: -3.92 Total: -8.41 kcal Atomic # 7 Polarization: -41.80 SS G_CDS: 0.17 Total: -41.64 kcal Atomic # 8 Polarization: -22.71 SS G_CDS: -0.77 Total: -23.48 kcal Atomic # 14 Polarization: 21.79 SS G_CDS: -4.15 Total: 17.64 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -34.41 -8.00 -42.41 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000263569382.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.792 kcal (2) G-P(sol) polarization free energy of solvation -34.413 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.204 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.998 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.411 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.202 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds