Wall clock time and date at job start Tue Mar 31 2020 12:04:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30827 * 1 3 3 Si 1.86797 * 120.00313 * 2 1 4 4 H 1.48501 * 109.47127 * 269.18791 * 3 2 1 5 5 H 1.48504 * 109.46952 * 29.18345 * 3 2 1 6 6 H 1.48497 * 109.47515 * 149.18425 * 3 2 1 7 7 C 1.39938 * 119.99716 * 179.97438 * 2 1 3 8 8 H 1.07992 * 119.99960 * 350.78447 * 7 2 1 9 9 C 1.41409 * 119.99665 * 170.78467 * 7 2 1 10 10 C 1.40783 * 120.21288 * 326.48660 * 9 7 2 11 11 C 1.37638 * 119.88263 * 179.97438 * 10 9 7 12 12 C 1.38532 * 120.32226 * 0.02562 * 11 10 9 13 13 C 1.39240 * 120.43190 * 0.02562 * 12 11 10 14 14 N 1.39952 * 119.94561 * 179.97438 * 13 12 11 15 15 C 1.34777 * 119.99855 * 142.06758 * 14 13 12 16 16 O 1.21591 * 119.99917 * 4.71970 * 15 14 13 17 17 N 1.34775 * 120.00412 * 184.71871 * 15 14 13 18 18 C 1.47214 * 120.80974 * 354.61817 * 17 15 14 19 19 C 1.53194 * 108.85056 * 126.33695 * 18 17 15 20 20 C 1.53040 * 109.31248 * 54.65556 * 19 18 17 21 21 C 1.53041 * 109.53721 * 298.63111 * 20 19 18 22 22 H 1.09006 * 109.52400 * 301.40237 * 21 20 19 23 23 C 1.50694 * 109.49934 * 181.31881 * 21 20 19 24 24 O 1.20829 * 119.99967 * 0.16642 * 23 21 20 25 25 O 1.34228 * 120.00274 * 180.16244 * 23 21 20 26 26 C 1.46926 * 120.63662 * 174.47863 * 17 15 14 27 27 C 1.38274 * 120.10419 * 0.23242 * 13 12 11 28 28 H 0.97002 * 120.00296 * 0.02562 * 1 2 3 29 29 H 1.08000 * 120.05363 * 359.97438 * 10 9 7 30 30 H 1.08003 * 119.83290 * 179.97438 * 11 10 9 31 31 H 1.08005 * 119.78161 * 179.97438 * 12 11 10 32 32 H 0.96999 * 120.00268 * 322.05916 * 14 13 12 33 33 H 1.08999 * 109.53341 * 6.53703 * 18 17 15 34 34 H 1.08999 * 109.56023 * 246.15756 * 18 17 15 35 35 H 1.08994 * 109.49720 * 294.70059 * 19 18 17 36 36 H 1.09005 * 109.49381 * 174.60501 * 19 18 17 37 37 H 1.08999 * 109.45735 * 178.61230 * 20 19 18 38 38 H 1.08992 * 109.45123 * 58.64354 * 20 19 18 39 39 H 0.96700 * 117.00160 * 180.02562 * 25 23 21 40 40 H 1.08999 * 109.58869 * 113.81959 * 26 17 15 41 41 H 1.08996 * 109.58287 * 353.53419 * 26 17 15 42 42 H 1.08000 * 120.16257 * 179.72019 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2423 1.6177 0.0000 4 1 2.5071 2.0364 -1.3999 5 1 1.4313 2.6576 0.6827 6 1 3.5312 1.4452 0.7172 7 6 2.0079 -1.2119 0.0005 8 1 1.4783 -2.1410 0.1507 9 6 3.4083 -1.2199 -0.1956 10 6 4.0110 -0.2670 -1.0385 11 6 5.3748 -0.2806 -1.2241 12 6 6.1581 -1.2283 -0.5858 13 6 5.5757 -2.1776 0.2500 14 7 6.3766 -3.1307 0.8894 15 6 6.0949 -3.5101 2.1516 16 8 5.0968 -3.0898 2.7043 17 7 6.9195 -4.3554 2.8012 18 6 8.0675 -4.9673 2.1121 19 6 9.3375 -4.6870 2.9215 20 6 9.1384 -5.1712 4.3596 21 6 7.9782 -4.4066 5.0011 22 1 8.1922 -3.3379 4.9834 23 6 7.8037 -4.8611 6.4272 24 8 8.5343 -5.7075 6.8852 25 8 6.8367 -4.3256 7.1888 26 6 6.6927 -4.6837 4.2152 27 6 4.2068 -2.1835 0.4449 28 1 -0.4851 0.8400 -0.0004 29 1 3.4044 0.4735 -1.5386 30 1 5.8363 0.4506 -1.8713 31 1 7.2273 -1.2313 -0.7380 32 1 7.1344 -3.5183 0.4242 33 1 8.1666 -4.5363 1.1158 34 1 7.9145 -6.0436 2.0333 35 1 9.5390 -3.6158 2.9230 36 1 10.1789 -5.2153 2.4729 37 1 10.0495 -4.9953 4.9314 38 1 8.9124 -6.2375 4.3555 39 1 6.7639 -4.6487 8.0973 40 1 6.4276 -5.7369 4.3079 41 1 5.8842 -4.0675 4.6082 42 1 3.7536 -2.9222 1.0894 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000263569382.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:04:44 Heat of formation + Delta-G solvation = -115.911370 kcal Electronic energy + Delta-G solvation = -26435.336045 eV Core-core repulsion = 22572.131025 eV Total energy + Delta-G solvation = -3863.205020 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -42.02144 -41.29137 -39.63225 -38.33217 -37.17070 -36.24322 -35.10141 -33.95577 -32.50971 -32.12032 -30.24985 -27.16394 -26.51134 -25.92835 -23.50437 -23.08907 -22.66238 -21.48460 -20.53140 -19.81996 -19.24422 -18.97311 -17.81735 -17.57567 -17.38253 -16.94869 -16.49222 -16.42218 -16.05732 -15.54391 -15.37525 -15.24599 -14.70334 -14.54640 -14.41554 -14.38952 -14.09315 -13.82920 -13.62684 -13.35374 -12.88460 -12.70756 -12.58695 -12.54606 -12.48471 -12.03223 -12.01783 -11.75998 -11.75177 -11.65422 -11.62342 -11.35384 -10.89153 -10.78373 -9.82212 -9.48241 -8.83359 -8.81467 -6.52263 0.72130 0.83312 1.01782 1.25577 1.42114 1.48311 1.51516 2.04615 2.11036 2.15828 2.65906 2.86301 3.49831 3.52590 3.65836 3.82298 3.97902 4.09052 4.34663 4.38391 4.44719 4.48656 4.55256 4.63465 4.69174 4.70148 4.84917 4.89188 5.00641 5.03296 5.05903 5.09410 5.33765 5.35848 5.43163 5.54744 5.59384 5.72620 5.80921 5.91667 5.98872 6.28083 6.41254 6.76192 6.82355 6.89636 6.92739 7.51548 8.26762 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.018838 B = 0.003203 C = 0.002910 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1485.991711 B = 8739.409377 C = 9621.207928 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.866 5.866 2 C 0.039 3.961 3 Si 0.976 3.024 4 H -0.246 1.246 5 H -0.283 1.283 6 H -0.256 1.256 7 C -0.488 4.488 8 H 0.043 0.957 9 C 0.081 3.919 10 C -0.259 4.259 11 C -0.065 4.065 12 C -0.229 4.229 13 C 0.182 3.818 14 N -0.668 5.668 15 C 0.697 3.303 16 O -0.614 6.614 17 N -0.621 5.621 18 C 0.098 3.902 19 C -0.125 4.125 20 C -0.100 4.100 21 C -0.092 4.092 22 H 0.115 0.885 23 C 0.495 3.505 24 O -0.537 6.537 25 O -0.515 6.515 26 C 0.141 3.859 27 C -0.215 4.215 28 H 0.292 0.708 29 H 0.103 0.897 30 H 0.144 0.856 31 H 0.148 0.852 32 H 0.419 0.581 33 H 0.096 0.904 34 H 0.091 0.909 35 H 0.071 0.929 36 H 0.114 0.886 37 H 0.081 0.919 38 H 0.077 0.923 39 H 0.429 0.571 40 H 0.082 0.918 41 H 0.079 0.921 42 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.111 -8.177 6.229 25.294 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.494 5.494 2 C -0.172 4.172 3 Si 0.800 3.200 4 H -0.171 1.171 5 H -0.210 1.210 6 H -0.180 1.180 7 C -0.519 4.519 8 H 0.061 0.939 9 C 0.078 3.922 10 C -0.279 4.279 11 C -0.084 4.084 12 C -0.250 4.250 13 C 0.088 3.912 14 N -0.319 5.319 15 C 0.400 3.600 16 O -0.493 6.493 17 N -0.358 5.358 18 C -0.023 4.023 19 C -0.163 4.163 20 C -0.137 4.137 21 C -0.112 4.112 22 H 0.133 0.867 23 C 0.338 3.662 24 O -0.427 6.427 25 O -0.329 6.329 26 C 0.018 3.982 27 C -0.237 4.237 28 H 0.102 0.898 29 H 0.120 0.880 30 H 0.161 0.839 31 H 0.165 0.835 32 H 0.261 0.739 33 H 0.114 0.886 34 H 0.110 0.890 35 H 0.089 0.911 36 H 0.132 0.868 37 H 0.100 0.900 38 H 0.096 0.904 39 H 0.291 0.709 40 H 0.100 0.900 41 H 0.097 0.903 42 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 22.381 -7.935 6.392 24.591 hybrid contribution -0.610 -0.030 0.798 1.005 sum 21.771 -7.965 7.189 24.271 Atomic orbital electron populations 1.69686 1.09118 1.31190 1.39446 1.26872 0.95589 1.04301 0.90485 0.85388 0.78766 0.75768 0.80116 1.17063 1.20995 1.18024 1.19434 0.92129 0.94463 1.45853 0.93875 1.17754 0.92739 0.92028 0.89683 1.21267 0.96418 1.04665 1.05514 1.20885 0.92313 0.97478 0.97708 1.20663 1.00007 0.98267 1.06048 1.17382 0.88766 0.90354 0.94727 1.42471 1.33047 1.43369 1.13061 1.16084 0.82871 0.79501 0.81592 1.90998 1.29053 1.60853 1.68419 1.47280 1.29848 1.47316 1.11376 1.22156 0.84276 0.99529 0.96345 1.21930 0.97500 1.02918 0.93938 1.21445 0.96128 0.99982 0.96154 1.21474 0.98574 1.04067 0.87062 0.86711 1.23312 0.76327 0.77653 0.88942 1.90712 1.45209 1.31976 1.74835 1.84577 1.52337 1.65087 1.30877 1.21244 0.95994 1.01757 0.79250 1.21042 0.92753 1.04720 1.05141 0.89801 0.87971 0.83860 0.83480 0.73941 0.88614 0.89032 0.91068 0.86764 0.90039 0.90445 0.70911 0.89975 0.90284 0.89514 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -51.17 13.93 21.82 0.30 -50.87 16 2 C 0.04 2.27 5.49 85.25 0.47 2.73 16 3 Si 0.98 45.58 24.41 68.60 1.67 47.25 16 4 H -0.25 -10.36 6.57 99.48 0.65 -9.71 16 5 H -0.28 -12.46 7.11 99.48 0.71 -11.76 16 6 H -0.26 -12.30 6.74 99.48 0.67 -11.63 16 7 C -0.49 -30.01 9.61 23.46 0.23 -29.79 16 8 H 0.04 2.90 8.06 -2.91 -0.02 2.88 16 9 C 0.08 4.43 5.11 -21.30 -0.11 4.32 16 10 C -0.26 -12.31 7.00 22.75 0.16 -12.15 16 11 C -0.07 -2.49 10.02 22.20 0.22 -2.27 16 12 C -0.23 -8.00 9.97 22.58 0.23 -7.77 16 13 C 0.18 7.34 6.24 38.09 0.24 7.58 16 14 N -0.67 -20.56 5.25 -317.33 -1.66 -22.23 16 15 C 0.70 23.69 8.13 179.05 1.46 25.15 16 16 O -0.61 -28.45 13.41 -4.00 -0.05 -28.51 16 17 N -0.62 -14.13 2.98 -836.17 -2.50 -16.63 16 18 C 0.10 1.21 6.44 86.31 0.56 1.77 16 19 C -0.12 -1.08 6.08 30.67 0.19 -0.90 16 20 C -0.10 -1.20 4.46 30.62 0.14 -1.06 16 21 C -0.09 -1.53 2.78 -11.46 -0.03 -1.56 16 22 H 0.11 1.93 8.14 -2.38 -0.02 1.91 16 23 C 0.49 9.08 7.63 71.23 0.54 9.63 16 24 O -0.54 -12.06 16.74 21.96 0.37 -11.70 16 25 O -0.52 -8.33 13.35 -51.40 -0.69 -9.01 16 26 C 0.14 3.07 5.62 86.36 0.49 3.55 16 27 C -0.21 -11.06 8.42 22.85 0.19 -10.87 16 28 H 0.29 15.45 8.30 -92.71 -0.77 14.68 16 29 H 0.10 4.80 4.42 -2.91 -0.01 4.79 16 30 H 0.14 4.22 8.06 -2.91 -0.02 4.20 16 31 H 0.15 3.73 8.06 -2.91 -0.02 3.71 16 32 H 0.42 8.61 6.30 -92.71 -0.58 8.03 16 33 H 0.10 0.90 5.59 -2.39 -0.01 0.89 16 34 H 0.09 0.88 8.14 -2.39 -0.02 0.86 16 35 H 0.07 0.70 8.14 -2.39 -0.02 0.68 16 36 H 0.11 0.42 8.14 -2.38 -0.02 0.40 16 37 H 0.08 0.96 8.07 -2.39 -0.02 0.94 16 38 H 0.08 0.95 8.13 -2.39 -0.02 0.93 16 39 H 0.43 3.07 9.10 -74.06 -0.67 2.39 16 40 H 0.08 1.58 8.14 -2.39 -0.02 1.56 16 41 H 0.08 2.25 7.04 -2.39 -0.02 2.23 16 42 H 0.09 4.93 6.45 -2.91 -0.02 4.91 16 Total: -1.00 -82.57 341.72 2.13 -80.43 By element: Atomic # 1 Polarization: 23.14 SS G_CDS: -0.26 Total: 22.88 kcal Atomic # 6 Polarization: -16.58 SS G_CDS: 4.95 Total: -11.62 kcal Atomic # 7 Polarization: -85.87 SS G_CDS: -3.86 Total: -89.72 kcal Atomic # 8 Polarization: -48.85 SS G_CDS: -0.37 Total: -49.22 kcal Atomic # 14 Polarization: 45.58 SS G_CDS: 1.67 Total: 47.25 kcal Total: -82.57 2.13 -80.43 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000263569382.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.477 kcal (2) G-P(sol) polarization free energy of solvation -82.568 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.045 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.134 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.434 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.911 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds