Wall clock time and date at job start Tue Mar 31 2020 13:29:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.50698 * 110.64238 * 2 1 4 4 O 1.20828 * 119.99988 * 118.31335 * 3 2 1 5 5 O 1.34226 * 119.99990 * 298.31718 * 3 2 1 6 6 C 1.55155 * 110.87447 * 123.25104 * 2 1 3 7 7 C 1.55134 * 101.48690 * 82.76881 * 6 2 1 8 8 N 1.47421 * 104.72466 * 37.29107 * 7 6 2 9 9 C 1.34770 * 125.64993 * 155.81593 * 8 7 6 10 10 O 1.21592 * 120.00442 * 179.69611 * 9 8 7 11 11 N 1.34777 * 119.99857 * 359.70143 * 9 8 7 12 12 C 1.39958 * 119.99951 * 185.19539 * 11 9 8 13 13 C 1.39289 * 119.94545 * 213.14212 * 12 11 9 14 14 C 1.38483 * 120.43149 * 179.97438 * 13 12 11 15 15 C 1.37684 * 120.31953 * 359.97438 * 14 13 12 16 16 C 1.40739 * 119.88538 * 0.02562 * 15 14 13 17 17 C 1.41404 * 120.21461 * 179.97438 * 16 15 14 18 18 H 1.08003 * 119.99734 * 334.29870 * 17 16 15 19 19 C 1.39934 * 120.00152 * 154.29423 * 17 16 15 20 20 N 1.30827 * 119.99843 * 334.13780 * 19 17 16 21 21 Si 1.86804 * 119.99848 * 154.14446 * 19 17 16 22 22 H 1.48505 * 109.46830 * 180.02562 * 21 19 17 23 23 H 1.48497 * 109.46930 * 299.99765 * 21 19 17 24 24 H 1.48494 * 109.47280 * 59.99898 * 21 19 17 25 25 C 1.38233 * 119.95114 * 33.41840 * 12 11 9 26 26 C 1.47024 * 108.70122 * 335.56036 * 8 7 6 27 27 H 1.09001 * 109.47002 * 181.68890 * 1 2 3 28 28 H 1.08999 * 109.46540 * 301.68563 * 1 2 3 29 29 H 1.08994 * 109.47238 * 61.68901 * 1 2 3 30 30 H 0.96707 * 116.99835 * 179.97438 * 5 3 2 31 31 H 1.09001 * 111.00680 * 201.00387 * 6 2 1 32 32 H 1.09002 * 111.00513 * 324.82089 * 6 2 1 33 33 H 1.09006 * 110.49309 * 278.45624 * 7 6 2 34 34 H 1.08997 * 110.34653 * 156.05907 * 7 6 2 35 35 H 0.96997 * 120.00336 * 5.18712 * 11 9 8 36 36 H 1.08007 * 119.78508 * 359.97438 * 13 12 11 37 37 H 1.07999 * 119.84676 * 180.02562 * 14 13 12 38 38 H 1.08001 * 120.05876 * 180.02562 * 15 14 13 39 39 H 0.97001 * 120.00106 * 354.26449 * 20 19 17 40 40 H 1.08010 * 120.15879 * 0.02562 * 25 12 11 41 41 H 1.09006 * 109.88611 * 120.70348 * 26 8 7 42 42 H 1.09001 * 109.87814 * 241.70983 * 26 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0613 1.4102 0.0000 4 8 2.7387 1.8006 0.9212 5 8 1.7819 2.2327 -1.0233 6 6 2.0829 -0.7949 1.2124 7 6 2.0142 -2.2518 0.6838 8 7 2.3756 -2.1507 -0.7418 9 6 2.8902 -3.1435 -1.4940 10 8 3.1466 -2.9478 -2.6664 11 7 3.1206 -4.3534 -0.9468 12 6 3.7547 -5.3511 -1.6960 13 6 3.4181 -6.6883 -1.4992 14 6 4.0388 -7.6835 -2.2354 15 6 4.9960 -7.3615 -3.1712 16 6 5.3464 -6.0147 -3.3811 17 6 6.3288 -5.6761 -4.3400 18 1 7.0901 -6.3932 -4.6095 19 6 6.3147 -4.4119 -4.9399 20 7 5.1932 -3.7449 -5.0338 21 14 7.8973 -3.6768 -5.6067 22 1 7.6156 -2.3393 -6.1873 23 1 8.8824 -3.5397 -4.5040 24 1 8.4519 -4.5667 -6.6582 25 6 4.7181 -5.0083 -2.6262 26 6 2.0760 -0.7891 -1.2086 27 1 -0.3633 -1.0272 0.0303 28 1 -0.3632 0.5398 0.8745 29 1 -0.3633 0.4873 -0.9047 30 1 2.1445 3.1281 -0.9786 31 1 3.1097 -0.5045 1.4346 32 1 1.4450 -0.6673 2.0870 33 1 1.0051 -2.6498 0.7920 34 1 2.7298 -2.8810 1.2129 35 1 2.8471 -4.5328 -0.0336 36 1 2.6682 -6.9507 -0.7676 37 1 3.7703 -8.7173 -2.0753 38 1 5.4770 -8.1410 -3.7433 39 1 4.3585 -4.1591 -4.7641 40 1 4.9833 -3.9721 -2.7761 41 1 2.9851 -0.3161 -1.5802 42 1 1.3271 -0.8250 -1.9998 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000263573796.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:29:01 Heat of formation + Delta-G solvation = -95.720720 kcal Electronic energy + Delta-G solvation = -26797.654828 eV Core-core repulsion = 22935.325340 eV Total energy + Delta-G solvation = -3862.329487 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.15997 -39.92951 -38.26477 -36.97285 -36.36620 -34.43563 -33.36711 -32.83823 -29.81526 -29.23028 -28.47598 -26.84005 -25.03092 -24.53472 -23.26942 -21.41473 -20.83124 -20.04322 -19.31691 -18.36712 -18.14743 -17.62211 -16.77561 -16.20790 -15.73460 -15.54426 -14.90300 -14.70451 -14.42373 -14.03642 -13.94817 -13.71241 -13.51537 -13.10259 -12.97200 -12.78027 -12.59908 -12.29311 -12.05385 -11.96850 -11.79487 -11.70743 -11.41341 -11.32274 -11.18385 -10.99112 -10.72632 -10.50634 -10.32142 -10.23228 -9.53982 -9.43013 -9.13117 -8.77072 -8.54585 -7.49072 -7.16725 -6.81551 -4.30060 1.85054 2.52969 2.71979 2.91381 2.98221 3.24555 3.34043 3.45854 3.72944 3.85207 4.12716 4.15767 4.36644 4.43982 4.72692 4.77495 4.87937 5.00013 5.21552 5.33399 5.39024 5.47165 5.58808 5.61413 5.68629 5.72538 5.85996 6.12901 6.16574 6.20511 6.39461 6.67133 6.84545 6.93480 7.10133 7.29391 7.57087 7.58014 7.76300 7.85710 7.92495 7.99322 8.30641 8.38173 8.46344 8.85806 9.03446 9.09543 10.27898 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.013794 B = 0.003908 C = 0.003214 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2029.434450 B = 7163.929077 C = 8710.642932 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.068 4.068 3 C 0.498 3.502 4 O -0.510 6.510 5 O -0.509 6.509 6 C -0.110 4.110 7 C 0.098 3.902 8 N -0.641 5.641 9 C 0.711 3.289 10 O -0.539 6.539 11 N -0.680 5.680 12 C 0.182 3.818 13 C -0.284 4.284 14 C -0.067 4.067 15 C -0.245 4.245 16 C 0.107 3.893 17 C -0.523 4.523 18 H 0.074 0.926 19 C 0.031 3.969 20 N -0.770 5.770 21 Si 1.063 2.937 22 H -0.275 1.275 23 H -0.277 1.277 24 H -0.277 1.277 25 C -0.216 4.216 26 C 0.148 3.852 27 H 0.077 0.923 28 H 0.065 0.935 29 H 0.075 0.925 30 H 0.412 0.588 31 H 0.092 0.908 32 H 0.093 0.907 33 H 0.071 0.929 34 H 0.079 0.921 35 H 0.393 0.607 36 H 0.089 0.911 37 H 0.091 0.909 38 H 0.092 0.908 39 H 0.309 0.691 40 H 0.124 0.876 41 H 0.071 0.929 42 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.554 9.640 11.621 17.868 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.070 4.070 3 C 0.339 3.661 4 O -0.397 6.397 5 O -0.321 6.321 6 C -0.148 4.148 7 C -0.025 4.025 8 N -0.382 5.382 9 C 0.414 3.586 10 O -0.412 6.412 11 N -0.327 5.327 12 C 0.089 3.911 13 C -0.305 4.305 14 C -0.086 4.086 15 C -0.265 4.265 16 C 0.103 3.897 17 C -0.551 4.551 18 H 0.092 0.908 19 C -0.194 4.194 20 N -0.392 5.392 21 Si 0.887 3.113 22 H -0.200 1.200 23 H -0.202 1.202 24 H -0.203 1.203 25 C -0.237 4.237 26 C 0.024 3.976 27 H 0.096 0.904 28 H 0.084 0.916 29 H 0.094 0.906 30 H 0.271 0.729 31 H 0.111 0.889 32 H 0.111 0.889 33 H 0.089 0.911 34 H 0.097 0.903 35 H 0.227 0.773 36 H 0.107 0.893 37 H 0.109 0.891 38 H 0.110 0.890 39 H 0.124 0.876 40 H 0.142 0.858 41 H 0.090 0.910 42 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -8.729 10.863 10.183 17.259 hybrid contribution -0.645 -0.888 1.397 1.776 sum -9.374 9.975 11.580 17.930 Atomic orbital electron populations 1.21834 0.90200 1.03895 1.03351 1.21550 0.98449 0.88102 0.98909 1.22960 0.76538 0.87692 0.78880 1.90729 1.36188 1.76590 1.36230 1.84552 1.72447 1.28378 1.46678 1.22870 1.03470 0.92805 0.95680 1.22361 1.00832 0.97179 0.82148 1.47510 1.69010 1.11129 1.10558 1.15506 0.78734 0.79851 0.84555 1.91107 1.55717 1.80778 1.13572 1.42582 1.62668 1.11082 1.16348 1.17292 0.93155 0.86018 0.94599 1.19893 1.09395 0.91211 1.10051 1.20303 0.96325 0.96330 0.95638 1.20913 1.04398 0.96184 1.04961 1.17531 0.90420 0.90826 0.90915 1.20530 1.12154 1.01454 1.20946 0.90757 1.26963 1.03490 0.93960 0.94943 1.70354 1.00853 1.39763 1.28206 0.83674 0.73824 0.76778 0.76990 1.19970 1.20248 1.20303 1.21199 1.00922 1.00400 1.01204 1.21572 1.01062 0.81037 0.93958 0.90429 0.91606 0.90646 0.72929 0.88947 0.88858 0.91066 0.90265 0.77350 0.89326 0.89054 0.89005 0.87609 0.85844 0.91035 0.89955 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.98 8.41 37.16 0.31 -0.67 16 2 C -0.07 -0.66 0.86 -153.83 -0.13 -0.80 16 3 C 0.50 5.25 6.83 36.00 0.25 5.49 16 4 O -0.51 -6.66 16.52 -18.75 -0.31 -6.97 16 5 O -0.51 -4.28 13.38 -39.25 -0.53 -4.81 16 6 C -0.11 -0.99 5.65 -24.46 -0.14 -1.13 16 7 C 0.10 0.98 6.23 -2.41 -0.02 0.96 16 8 N -0.64 -9.44 3.32 -176.09 -0.59 -10.02 16 9 C 0.71 14.27 8.22 -86.92 -0.71 13.56 16 10 O -0.54 -13.56 14.31 5.28 0.08 -13.49 16 11 N -0.68 -13.09 5.29 -14.27 -0.08 -13.17 16 12 C 0.18 4.30 6.27 -83.76 -0.53 3.78 16 13 C -0.28 -6.31 9.97 -39.10 -0.39 -6.70 16 14 C -0.07 -1.53 10.02 -39.69 -0.40 -1.92 16 15 C -0.24 -6.22 9.79 -38.84 -0.38 -6.60 16 16 C 0.11 2.97 5.28 -106.85 -0.56 2.41 16 17 C -0.52 -14.65 8.98 -37.74 -0.34 -14.98 16 18 H 0.07 2.00 7.97 -52.48 -0.42 1.58 16 19 C 0.03 0.85 4.92 -17.34 -0.09 0.77 16 20 N -0.77 -22.28 12.34 55.55 0.69 -21.60 16 21 Si 1.06 23.05 30.00 -169.99 -5.10 17.94 16 22 H -0.27 -5.94 7.11 56.52 0.40 -5.54 16 23 H -0.28 -5.80 7.11 56.52 0.40 -5.40 16 24 H -0.28 -5.63 7.11 56.52 0.40 -5.23 16 25 C -0.22 -5.87 6.57 -38.69 -0.25 -6.12 16 26 C 0.15 1.95 6.02 -3.06 -0.02 1.93 16 27 H 0.08 0.53 7.44 -51.93 -0.39 0.15 16 28 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 29 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 30 H 0.41 1.73 9.10 45.56 0.41 2.14 16 31 H 0.09 0.98 7.49 -51.93 -0.39 0.60 16 32 H 0.09 0.63 8.04 -51.93 -0.42 0.21 16 33 H 0.07 0.57 7.71 -51.93 -0.40 0.17 16 34 H 0.08 0.74 7.37 -51.93 -0.38 0.35 16 35 H 0.39 5.91 7.35 -40.82 -0.30 5.61 16 36 H 0.09 1.70 8.06 -52.48 -0.42 1.28 16 37 H 0.09 1.78 8.06 -52.49 -0.42 1.36 16 38 H 0.09 2.21 8.06 -52.49 -0.42 1.79 16 39 H 0.31 9.43 6.70 -40.82 -0.27 9.16 16 40 H 0.12 3.64 4.90 -52.48 -0.26 3.38 16 41 H 0.07 1.08 7.81 -51.93 -0.41 0.67 16 42 H 0.08 1.09 7.85 -51.93 -0.41 0.69 16 LS Contribution 350.70 15.07 5.28 5.28 Total: -1.00 -35.31 350.70 -8.48 -43.79 By element: Atomic # 1 Polarization: 17.59 SS G_CDS: -4.53 Total: 13.06 kcal Atomic # 6 Polarization: -6.63 SS G_CDS: -3.40 Total: -10.03 kcal Atomic # 7 Polarization: -44.81 SS G_CDS: 0.02 Total: -44.79 kcal Atomic # 8 Polarization: -24.50 SS G_CDS: -0.76 Total: -25.26 kcal Atomic # 14 Polarization: 23.05 SS G_CDS: -5.10 Total: 17.94 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -35.31 -8.48 -43.79 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000263573796.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.932 kcal (2) G-P(sol) polarization free energy of solvation -35.310 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.242 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.479 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.789 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.721 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds