Wall clock time and date at job start Tue Mar 31 2020 13:29:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.50698 * 110.64238 * 2 1 4 4 O 1.20828 * 119.99988 * 118.31335 * 3 2 1 5 5 O 1.34226 * 119.99990 * 298.31718 * 3 2 1 6 6 C 1.55155 * 110.87447 * 123.25104 * 2 1 3 7 7 C 1.55134 * 101.48690 * 82.76881 * 6 2 1 8 8 N 1.47421 * 104.72466 * 37.29107 * 7 6 2 9 9 C 1.34770 * 125.64993 * 155.81593 * 8 7 6 10 10 O 1.21592 * 120.00442 * 179.69611 * 9 8 7 11 11 N 1.34777 * 119.99857 * 359.70143 * 9 8 7 12 12 C 1.39958 * 119.99951 * 185.19539 * 11 9 8 13 13 C 1.39289 * 119.94545 * 213.14212 * 12 11 9 14 14 C 1.38483 * 120.43149 * 179.97438 * 13 12 11 15 15 C 1.37684 * 120.31953 * 359.97438 * 14 13 12 16 16 C 1.40739 * 119.88538 * 0.02562 * 15 14 13 17 17 C 1.41404 * 120.21461 * 179.97438 * 16 15 14 18 18 H 1.08003 * 119.99734 * 334.29870 * 17 16 15 19 19 C 1.39934 * 120.00152 * 154.29423 * 17 16 15 20 20 N 1.30827 * 119.99843 * 334.13780 * 19 17 16 21 21 Si 1.86804 * 119.99848 * 154.14446 * 19 17 16 22 22 H 1.48505 * 109.46830 * 180.02562 * 21 19 17 23 23 H 1.48497 * 109.46930 * 299.99765 * 21 19 17 24 24 H 1.48494 * 109.47280 * 59.99898 * 21 19 17 25 25 C 1.38233 * 119.95114 * 33.41840 * 12 11 9 26 26 C 1.47024 * 108.70122 * 335.56036 * 8 7 6 27 27 H 1.09001 * 109.47002 * 181.68890 * 1 2 3 28 28 H 1.08999 * 109.46540 * 301.68563 * 1 2 3 29 29 H 1.08994 * 109.47238 * 61.68901 * 1 2 3 30 30 H 0.96707 * 116.99835 * 179.97438 * 5 3 2 31 31 H 1.09001 * 111.00680 * 201.00387 * 6 2 1 32 32 H 1.09002 * 111.00513 * 324.82089 * 6 2 1 33 33 H 1.09006 * 110.49309 * 278.45624 * 7 6 2 34 34 H 1.08997 * 110.34653 * 156.05907 * 7 6 2 35 35 H 0.96997 * 120.00336 * 5.18712 * 11 9 8 36 36 H 1.08007 * 119.78508 * 359.97438 * 13 12 11 37 37 H 1.07999 * 119.84676 * 180.02562 * 14 13 12 38 38 H 1.08001 * 120.05876 * 180.02562 * 15 14 13 39 39 H 0.97001 * 120.00106 * 354.26449 * 20 19 17 40 40 H 1.08010 * 120.15879 * 0.02562 * 25 12 11 41 41 H 1.09006 * 109.88611 * 120.70348 * 26 8 7 42 42 H 1.09001 * 109.87814 * 241.70983 * 26 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0613 1.4102 0.0000 4 8 2.7387 1.8006 0.9212 5 8 1.7819 2.2327 -1.0233 6 6 2.0829 -0.7949 1.2124 7 6 2.0142 -2.2518 0.6838 8 7 2.3756 -2.1507 -0.7418 9 6 2.8902 -3.1435 -1.4940 10 8 3.1466 -2.9478 -2.6664 11 7 3.1206 -4.3534 -0.9468 12 6 3.7547 -5.3511 -1.6960 13 6 3.4181 -6.6883 -1.4992 14 6 4.0388 -7.6835 -2.2354 15 6 4.9960 -7.3615 -3.1712 16 6 5.3464 -6.0147 -3.3811 17 6 6.3288 -5.6761 -4.3400 18 1 7.0901 -6.3932 -4.6095 19 6 6.3147 -4.4119 -4.9399 20 7 5.1932 -3.7449 -5.0338 21 14 7.8973 -3.6768 -5.6067 22 1 7.6156 -2.3393 -6.1873 23 1 8.8824 -3.5397 -4.5040 24 1 8.4519 -4.5667 -6.6582 25 6 4.7181 -5.0083 -2.6262 26 6 2.0760 -0.7891 -1.2086 27 1 -0.3633 -1.0272 0.0303 28 1 -0.3632 0.5398 0.8745 29 1 -0.3633 0.4873 -0.9047 30 1 2.1445 3.1281 -0.9786 31 1 3.1097 -0.5045 1.4346 32 1 1.4450 -0.6673 2.0870 33 1 1.0051 -2.6498 0.7920 34 1 2.7298 -2.8810 1.2129 35 1 2.8471 -4.5328 -0.0336 36 1 2.6682 -6.9507 -0.7676 37 1 3.7703 -8.7173 -2.0753 38 1 5.4770 -8.1410 -3.7433 39 1 4.3585 -4.1591 -4.7641 40 1 4.9833 -3.9721 -2.7761 41 1 2.9851 -0.3161 -1.5802 42 1 1.3271 -0.8250 -1.9998 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000263573796.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:29:00 Heat of formation + Delta-G solvation = -120.286988 kcal Electronic energy + Delta-G solvation = -26798.720101 eV Core-core repulsion = 22935.325340 eV Total energy + Delta-G solvation = -3863.394761 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -42.14537 -41.27690 -39.65775 -38.52737 -37.20123 -36.28134 -35.11800 -34.03763 -31.19034 -30.71527 -30.18242 -27.78022 -27.00202 -25.62452 -24.19775 -23.16796 -22.66216 -20.97405 -20.76594 -20.09949 -19.10041 -18.96573 -17.75442 -17.61428 -16.99674 -16.73785 -16.58128 -16.18188 -15.94813 -15.64046 -15.33784 -14.90591 -14.74346 -14.43455 -14.17503 -13.93459 -13.81362 -13.70015 -13.40139 -13.29834 -13.02859 -12.80244 -12.76176 -12.58972 -12.32898 -12.20259 -12.09902 -12.00575 -11.92350 -11.58347 -11.42135 -11.25121 -10.94916 -10.73367 -9.81415 -9.47358 -9.20790 -8.70554 -6.40867 0.82113 0.98720 1.00994 1.43493 1.45971 1.60900 1.75866 1.98815 2.14047 2.35297 2.75933 2.92552 3.09664 3.33201 3.61148 3.69627 3.98366 4.15668 4.19803 4.40102 4.48223 4.49675 4.61630 4.63002 4.74303 4.79249 4.83217 4.87136 4.98328 5.01754 5.10313 5.13578 5.22932 5.25721 5.49275 5.57719 5.65619 5.87759 5.90243 5.96042 6.05861 6.33283 6.44673 6.83598 6.87467 6.91754 7.03474 7.53921 8.14388 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.013794 B = 0.003908 C = 0.003214 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2029.434450 B = 7163.929077 C = 8710.642932 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.059 4.059 3 C 0.500 3.500 4 O -0.538 6.538 5 O -0.508 6.508 6 C -0.103 4.103 7 C 0.092 3.908 8 N -0.634 5.634 9 C 0.704 3.296 10 O -0.599 6.599 11 N -0.667 5.667 12 C 0.182 3.818 13 C -0.264 4.264 14 C -0.064 4.064 15 C -0.262 4.262 16 C 0.077 3.923 17 C -0.566 4.566 18 H 0.072 0.928 19 C -0.006 4.006 20 N -0.802 5.802 21 Si 1.115 2.885 22 H -0.276 1.276 23 H -0.266 1.266 24 H -0.252 1.252 25 C -0.240 4.240 26 C 0.144 3.856 27 H 0.087 0.913 28 H 0.086 0.914 29 H 0.073 0.927 30 H 0.430 0.570 31 H 0.073 0.927 32 H 0.128 0.872 33 H 0.105 0.895 34 H 0.089 0.911 35 H 0.416 0.584 36 H 0.134 0.866 37 H 0.135 0.865 38 H 0.097 0.903 39 H 0.287 0.713 40 H 0.091 0.909 41 H 0.042 0.958 42 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.311 9.084 14.278 20.355 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.061 4.061 3 C 0.343 3.657 4 O -0.428 6.428 5 O -0.321 6.321 6 C -0.141 4.141 7 C -0.029 4.029 8 N -0.373 5.373 9 C 0.406 3.594 10 O -0.476 6.476 11 N -0.316 5.316 12 C 0.088 3.912 13 C -0.286 4.286 14 C -0.083 4.083 15 C -0.282 4.282 16 C 0.073 3.927 17 C -0.594 4.594 18 H 0.090 0.910 19 C -0.223 4.223 20 N -0.423 5.423 21 Si 0.932 3.068 22 H -0.201 1.201 23 H -0.191 1.191 24 H -0.176 1.176 25 C -0.262 4.262 26 C 0.020 3.980 27 H 0.106 0.894 28 H 0.105 0.895 29 H 0.092 0.908 30 H 0.292 0.708 31 H 0.091 0.909 32 H 0.147 0.853 33 H 0.123 0.877 34 H 0.108 0.892 35 H 0.254 0.746 36 H 0.152 0.848 37 H 0.153 0.847 38 H 0.115 0.885 39 H 0.099 0.901 40 H 0.110 0.890 41 H 0.060 0.940 42 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -10.529 10.322 12.915 19.601 hybrid contribution -0.258 -0.761 0.736 1.090 sum -10.787 9.561 13.650 19.852 Atomic orbital electron populations 1.21857 0.87691 1.04902 1.04339 1.21556 1.00207 0.87105 0.97210 1.23095 0.75834 0.88134 0.78655 1.90722 1.37366 1.77282 1.37382 1.84521 1.72221 1.29606 1.45785 1.22889 1.03169 0.91635 0.96428 1.22773 1.02894 0.98386 0.78860 1.47448 1.67223 1.10284 1.12357 1.15752 0.78697 0.80678 0.84270 1.91088 1.58060 1.81857 1.16561 1.42311 1.62016 1.10238 1.17025 1.17445 0.92086 0.87851 0.93838 1.20426 1.08670 0.90037 1.09433 1.20782 0.94650 0.98773 0.94057 1.21147 1.05595 0.95282 1.06205 1.17907 0.91041 0.92311 0.91394 1.20730 1.13400 1.02513 1.22749 0.90978 1.28429 1.05563 0.94238 0.94115 1.70480 1.00655 1.40122 1.31090 0.83070 0.70172 0.76273 0.77312 1.20117 1.19113 1.17571 1.21063 1.03099 0.98841 1.03197 1.21641 0.99818 0.80682 0.95875 0.89447 0.89508 0.90761 0.70833 0.90873 0.85346 0.87672 0.89229 0.74592 0.84801 0.84735 0.88519 0.90079 0.89043 0.93982 0.90369 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.49 8.41 71.98 0.61 -0.88 16 2 C -0.06 -1.04 0.86 -51.74 -0.04 -1.09 16 3 C 0.50 10.04 6.83 71.24 0.49 10.53 16 4 O -0.54 -13.59 16.52 21.96 0.36 -13.23 16 5 O -0.51 -8.11 13.38 -51.38 -0.69 -8.79 16 6 C -0.10 -1.59 5.65 32.06 0.18 -1.41 16 7 C 0.09 1.56 6.23 86.93 0.54 2.10 16 8 N -0.63 -18.30 3.32 -829.30 -2.76 -21.06 16 9 C 0.70 28.65 8.22 179.06 1.47 30.12 16 10 O -0.60 -31.87 14.31 -4.01 -0.06 -31.92 16 11 N -0.67 -24.93 5.29 -317.32 -1.68 -26.61 16 12 C 0.18 8.51 6.27 38.10 0.24 8.75 16 13 C -0.26 -10.89 9.97 22.58 0.23 -10.66 16 14 C -0.06 -2.74 10.02 22.20 0.22 -2.52 16 15 C -0.26 -13.35 9.79 22.75 0.22 -13.13 16 16 C 0.08 4.44 5.28 -21.31 -0.11 4.33 16 17 C -0.57 -33.33 8.98 23.46 0.21 -33.12 16 18 H 0.07 4.08 7.97 -2.91 -0.02 4.06 16 19 C -0.01 -0.32 4.92 85.25 0.42 0.10 16 20 N -0.80 -49.52 12.34 21.82 0.27 -49.25 16 21 Si 1.11 48.26 30.00 68.60 2.06 50.32 16 22 H -0.28 -11.87 7.11 99.48 0.71 -11.17 16 23 H -0.27 -10.93 7.11 99.48 0.71 -10.23 16 24 H -0.25 -9.76 7.11 99.48 0.71 -9.05 16 25 C -0.24 -13.60 6.57 22.85 0.15 -13.45 16 26 C 0.14 3.83 6.02 86.73 0.52 4.35 16 27 H 0.09 0.86 7.44 -2.39 -0.02 0.84 16 28 H 0.09 0.68 8.14 -2.39 -0.02 0.66 16 29 H 0.07 0.89 8.14 -2.39 -0.02 0.87 16 30 H 0.43 3.20 9.10 -74.05 -0.67 2.53 16 31 H 0.07 1.45 7.49 -2.39 -0.02 1.43 16 32 H 0.13 1.14 8.04 -2.39 -0.02 1.12 16 33 H 0.11 1.18 7.71 -2.38 -0.02 1.16 16 34 H 0.09 1.37 7.37 -2.39 -0.02 1.35 16 35 H 0.42 11.27 7.35 -92.71 -0.68 10.58 16 36 H 0.13 4.34 8.06 -2.91 -0.02 4.32 16 37 H 0.13 4.59 8.06 -2.91 -0.02 4.57 16 38 H 0.10 4.69 8.06 -2.91 -0.02 4.66 16 39 H 0.29 18.88 6.70 -92.71 -0.62 18.25 16 40 H 0.09 5.77 4.90 -2.91 -0.01 5.76 16 41 H 0.04 1.35 7.81 -2.38 -0.02 1.33 16 42 H 0.08 2.13 7.85 -2.39 -0.02 2.11 16 Total: -1.00 -84.07 350.70 2.72 -81.35 By element: Atomic # 1 Polarization: 35.30 SS G_CDS: -0.13 Total: 35.17 kcal Atomic # 6 Polarization: -21.32 SS G_CDS: 5.34 Total: -15.98 kcal Atomic # 7 Polarization: -92.75 SS G_CDS: -4.17 Total: -96.92 kcal Atomic # 8 Polarization: -53.56 SS G_CDS: -0.38 Total: -53.94 kcal Atomic # 14 Polarization: 48.26 SS G_CDS: 2.06 Total: 50.32 kcal Total: -84.07 2.72 -81.35 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000263573796.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.937 kcal (2) G-P(sol) polarization free energy of solvation -84.069 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -123.006 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.719 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.350 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.287 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds