Wall clock time and date at job start Tue Mar 31 2020 13:19:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 C 1.39599 * 120.07517 * 2 1 4 4 C 1.47844 * 120.14102 * 359.97295 * 3 2 1 5 5 O 1.21553 * 120.00238 * 57.78550 * 4 3 2 6 6 N 1.34781 * 120.00012 * 237.78349 * 4 3 2 7 7 C 1.46500 * 119.99931 * 356.04322 * 6 4 3 8 8 C 1.50696 * 109.47013 * 89.99825 * 7 6 4 9 9 H 1.07998 * 120.00171 * 359.97438 * 8 7 6 10 10 C 1.37875 * 120.00060 * 180.02562 * 8 7 6 11 11 N 1.31512 * 120.00664 * 180.02562 * 10 8 7 12 12 Si 1.86805 * 119.99914 * 359.97438 * 10 8 7 13 13 H 1.48505 * 109.46761 * 89.99950 * 12 10 8 14 14 H 1.48497 * 109.47451 * 210.00136 * 12 10 8 15 15 H 1.48500 * 109.47106 * 330.00394 * 12 10 8 16 16 C 1.46501 * 119.99966 * 176.04414 * 6 4 3 17 17 C 1.52999 * 109.47354 * 94.69802 * 16 6 4 18 18 C 1.52999 * 117.49976 * 243.49161 * 17 16 6 19 19 C 1.52993 * 117.49805 * 174.82992 * 17 16 6 20 20 C 1.39552 * 119.70995 * 179.72051 * 3 2 1 21 21 C 1.37970 * 119.85482 * 0.55132 * 20 3 2 22 22 C 1.38339 * 120.14394 * 359.69851 * 21 20 3 23 23 C 1.37931 * 120.07207 * 180.27278 * 2 1 3 24 24 N 1.48019 * 119.92723 * 0.02562 * 23 2 1 25 25 O 1.21798 * 119.99707 * 180.53522 * 24 23 2 26 26 O 1.21801 * 120.00061 * 0.53560 * 24 23 2 27 27 H 1.09002 * 109.47186 * 262.83715 * 1 2 3 28 28 H 1.09000 * 109.46936 * 22.83353 * 1 2 3 29 29 H 1.08998 * 109.46888 * 142.82916 * 1 2 3 30 30 H 1.08997 * 109.47223 * 209.99996 * 7 6 4 31 31 H 1.09000 * 109.46705 * 329.99870 * 7 6 4 32 32 H 0.96995 * 120.00767 * 179.97438 * 11 10 8 33 33 H 1.09000 * 109.47142 * 214.70024 * 16 6 4 34 34 H 1.09005 * 109.47171 * 334.69420 * 16 6 4 35 35 H 1.09005 * 115.54807 * 29.16343 * 17 16 6 36 36 H 1.09004 * 117.49531 * 0.02562 * 18 17 16 37 37 H 1.08994 * 117.49662 * 145.01477 * 18 17 16 38 38 H 1.09000 * 117.50177 * 214.97673 * 19 17 16 39 39 H 1.09000 * 117.50396 * 0.02562 * 19 17 16 40 40 H 1.07998 * 120.07304 * 180.27250 * 20 3 2 41 41 H 1.07999 * 119.93068 * 179.72402 * 21 20 3 42 42 H 1.07999 * 119.85365 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2066 1.2080 0.0000 4 6 1.4723 2.4912 -0.0006 5 8 0.6829 2.7402 0.8896 6 7 1.6780 3.3849 -0.9883 7 6 2.6916 3.1236 -2.0132 8 6 2.0635 2.3774 -3.1620 9 1 1.0144 2.1229 -3.1315 10 6 2.8285 2.0186 -4.2515 11 7 2.2804 1.3679 -5.2543 12 14 4.6433 2.4583 -4.3040 13 1 5.4366 1.3587 -3.6981 14 1 5.0648 2.6537 -5.7144 15 1 4.8713 3.7117 -3.5410 16 6 0.8880 4.6178 -1.0368 17 6 1.6578 5.7444 -0.3446 18 6 1.0372 6.3547 0.9136 19 6 1.0522 7.1485 -0.3952 20 6 3.6021 1.1992 0.0059 21 6 4.2813 -0.0018 0.0002 22 6 3.5820 -1.1954 -0.0051 23 6 2.1982 -1.1936 -0.0057 24 7 1.4581 -2.4755 -0.0124 25 8 2.0671 -3.5303 -0.0075 26 8 0.2401 -2.4755 -0.0227 27 1 -0.3634 -0.1281 1.0197 28 1 -0.3633 0.9471 -0.3988 29 1 -0.3633 -0.8189 -0.6209 30 1 3.0972 4.0693 -2.3726 31 1 3.4944 2.5231 -1.5854 32 1 2.8184 1.1158 -6.0210 33 1 0.7023 4.8896 -2.0759 34 1 -0.0626 4.4605 -0.5270 35 1 2.7442 5.6631 -0.3814 36 1 0.0806 5.9533 1.2485 37 1 1.7152 6.6753 1.7045 38 1 1.7402 7.9911 -0.4647 39 1 0.1053 7.2696 -0.9212 40 1 4.1492 2.1303 0.0104 41 1 5.3613 -0.0100 0.0003 42 1 4.1185 -2.1327 -0.0091 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000264067848.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:19:20 Heat of formation + Delta-G solvation = 24.448769 kcal Electronic energy + Delta-G solvation = -27431.175832 eV Core-core repulsion = 23574.057284 eV Total energy + Delta-G solvation = -3857.118547 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -42.03945 -40.29868 -38.49531 -37.05242 -36.44858 -35.12128 -32.90761 -32.60558 -31.92720 -28.65685 -27.91742 -26.60030 -25.76697 -23.50984 -22.56045 -22.20976 -22.02635 -20.63227 -19.50875 -18.43888 -18.18258 -17.35882 -17.19744 -16.56703 -16.15137 -16.00078 -15.73797 -15.01305 -14.47206 -14.28341 -13.84928 -13.69910 -13.35425 -13.23081 -12.80336 -12.55110 -12.46815 -12.29988 -12.21396 -11.84839 -11.67698 -11.49687 -11.42081 -11.14954 -11.06755 -10.91431 -10.85384 -10.54394 -10.34387 -10.28178 -9.82659 -9.78824 -9.54511 -9.31494 -8.91179 -8.83766 -8.02908 -6.34293 -4.36473 0.06222 0.94925 1.52224 1.62752 2.88614 3.03265 3.09781 3.13695 3.27912 3.62691 3.96007 4.12596 4.49540 4.50761 4.72802 4.84139 4.89380 4.95980 4.98960 5.06024 5.13088 5.26692 5.50299 5.56556 5.59755 5.70310 5.84472 5.87673 5.92070 5.97285 6.01809 6.05784 6.18883 6.20751 6.21498 6.28600 6.34281 6.41491 6.42059 6.79848 7.05009 7.27445 7.81399 7.91369 8.21369 8.51455 8.71223 9.23237 10.78138 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.010210 B = 0.005877 C = 0.004407 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2741.691453 B = 4763.002431 C = 6351.798697 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.037 3.963 3 C -0.100 4.100 4 C 0.566 3.434 5 O -0.547 6.547 6 N -0.576 5.576 7 C 0.198 3.802 8 C -0.541 4.541 9 H 0.079 0.921 10 C 0.079 3.921 11 N -0.884 5.884 12 Si 0.865 3.135 13 H -0.272 1.272 14 H -0.281 1.281 15 H -0.263 1.263 16 C 0.149 3.851 17 C -0.164 4.164 18 C -0.174 4.174 19 C -0.178 4.178 20 C -0.030 4.030 21 C -0.131 4.131 22 C -0.041 4.041 23 C -0.054 4.054 24 N 0.040 4.960 25 O -0.176 6.176 26 O -0.160 6.160 27 H 0.088 0.912 28 H 0.076 0.924 29 H 0.105 0.895 30 H 0.040 0.960 31 H 0.033 0.967 32 H 0.268 0.732 33 H 0.088 0.912 34 H 0.081 0.919 35 H 0.103 0.897 36 H 0.096 0.904 37 H 0.087 0.913 38 H 0.091 0.909 39 H 0.094 0.906 40 H 0.145 0.855 41 H 0.148 0.852 42 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.728 3.588 10.179 11.418 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.034 3.966 3 C -0.104 4.104 4 C 0.353 3.647 5 O -0.426 6.426 6 N -0.305 5.305 7 C 0.078 3.922 8 C -0.579 4.579 9 H 0.097 0.903 10 C -0.125 4.125 11 N -0.521 5.521 12 Si 0.691 3.309 13 H -0.197 1.197 14 H -0.206 1.206 15 H -0.188 1.188 16 C 0.026 3.974 17 C -0.183 4.183 18 C -0.211 4.211 19 C -0.215 4.215 20 C -0.049 4.049 21 C -0.149 4.149 22 C -0.060 4.060 23 C -0.138 4.138 24 N 0.556 4.444 25 O -0.388 6.388 26 O -0.374 6.374 27 H 0.106 0.894 28 H 0.095 0.905 29 H 0.123 0.877 30 H 0.058 0.942 31 H 0.050 0.950 32 H 0.078 0.922 33 H 0.106 0.894 34 H 0.099 0.901 35 H 0.121 0.879 36 H 0.114 0.886 37 H 0.106 0.894 38 H 0.110 0.890 39 H 0.113 0.887 40 H 0.162 0.838 41 H 0.166 0.834 42 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges 3.699 4.243 10.413 11.837 hybrid contribution 1.074 -0.164 -0.520 1.205 sum 4.773 4.079 9.893 11.717 Atomic orbital electron populations 1.21386 0.88167 1.05293 1.04171 1.19658 0.98138 0.89188 0.89571 1.19681 0.93761 0.93163 1.03801 1.17854 0.81916 0.82919 0.82035 1.90744 1.36928 1.78233 1.36712 1.47818 1.38350 1.18407 1.25930 1.20101 0.87415 0.97565 0.87153 1.21292 0.98689 1.36915 1.01041 0.90336 1.24857 0.98206 0.94264 0.95205 1.69872 1.36533 1.38025 1.07696 0.87020 0.85904 0.79596 0.78394 1.19696 1.20607 1.18756 1.20972 0.93616 0.81728 1.01073 1.22754 0.99877 0.94127 1.01580 1.22992 1.02864 1.04044 0.91229 1.22929 1.02837 0.94338 1.01430 1.21640 0.92982 0.99331 0.90923 1.21011 1.00855 0.90622 1.02443 1.21047 0.90804 1.00740 0.93397 1.20696 0.92351 0.82989 1.17748 1.43485 1.01126 1.02643 0.97196 1.94493 1.70128 1.19859 1.54306 1.94450 0.95757 1.93836 1.53375 0.89406 0.90525 0.87713 0.94235 0.94953 0.92192 0.89416 0.90075 0.87920 0.88577 0.89420 0.89050 0.88706 0.83778 0.83418 0.83029 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.33 8.18 36.01 0.29 -2.04 16 2 C 0.04 0.66 5.91 -104.22 -0.62 0.04 16 3 C -0.10 -1.78 5.01 -104.97 -0.53 -2.31 16 4 C 0.57 10.71 5.94 -12.33 -0.07 10.64 16 5 O -0.55 -11.05 15.72 5.32 0.08 -10.96 16 6 N -0.58 -10.75 2.46 -176.17 -0.43 -11.18 16 7 C 0.20 4.02 4.01 -5.20 -0.02 3.99 16 8 C -0.54 -13.53 9.94 -34.44 -0.34 -13.87 16 9 H 0.08 2.23 8.06 -52.49 -0.42 1.80 16 10 C 0.08 2.05 5.47 -17.82 -0.10 1.96 16 11 N -0.88 -25.06 13.96 55.43 0.77 -24.29 16 12 Si 0.86 18.74 27.47 -169.99 -4.67 14.07 16 13 H -0.27 -5.70 7.11 56.52 0.40 -5.30 16 14 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 15 H -0.26 -5.27 6.54 56.52 0.37 -4.90 16 16 C 0.15 2.45 5.71 -4.04 -0.02 2.43 16 17 C -0.16 -2.29 6.01 -90.62 -0.54 -2.84 16 18 C -0.17 -2.18 10.18 -26.69 -0.27 -2.45 16 19 C -0.18 -2.05 10.25 -26.70 -0.27 -2.32 16 20 C -0.03 -0.45 7.66 -39.19 -0.30 -0.75 16 21 C -0.13 -1.70 10.03 -39.64 -0.40 -2.09 16 22 C -0.04 -0.58 9.55 -39.49 -0.38 -0.96 16 23 C -0.05 -0.92 6.84 -80.01 -0.55 -1.47 16 24 N 0.04 0.71 4.45 33.93 0.15 0.86 16 25 O -0.18 -3.07 18.44 -29.46 -0.54 -3.61 16 26 O -0.16 -2.90 15.26 -29.46 -0.45 -3.34 16 27 H 0.09 1.40 8.14 -51.93 -0.42 0.98 16 28 H 0.08 1.42 6.54 -51.93 -0.34 1.08 16 29 H 0.10 1.83 5.62 -51.93 -0.29 1.54 16 30 H 0.04 0.79 7.13 -51.93 -0.37 0.42 16 31 H 0.03 0.62 3.63 -51.93 -0.19 0.43 16 32 H 0.27 7.14 8.31 -40.82 -0.34 6.80 16 33 H 0.09 1.46 8.11 -51.93 -0.42 1.04 16 34 H 0.08 1.35 7.07 -51.93 -0.37 0.98 16 35 H 0.10 1.46 8.14 -51.93 -0.42 1.03 16 36 H 0.10 1.25 8.03 -51.93 -0.42 0.83 16 37 H 0.09 1.00 8.14 -51.93 -0.42 0.58 16 38 H 0.09 0.93 8.14 -51.93 -0.42 0.51 16 39 H 0.09 1.03 8.14 -51.93 -0.42 0.61 16 40 H 0.14 1.85 7.10 -52.49 -0.37 1.48 16 41 H 0.15 1.37 8.06 -52.49 -0.42 0.95 16 42 H 0.15 1.79 7.60 -52.49 -0.40 1.39 16 LS Contribution 355.17 15.07 5.35 5.35 Total: -1.00 -29.55 355.17 -9.14 -38.70 By element: Atomic # 1 Polarization: 11.75 SS G_CDS: -5.29 Total: 6.45 kcal Atomic # 6 Polarization: -7.92 SS G_CDS: -4.12 Total: -12.04 kcal Atomic # 7 Polarization: -35.10 SS G_CDS: 0.49 Total: -34.61 kcal Atomic # 8 Polarization: -17.01 SS G_CDS: -0.91 Total: -17.92 kcal Atomic # 14 Polarization: 18.74 SS G_CDS: -4.67 Total: 14.07 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -29.55 -9.14 -38.70 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000264067848.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.145 kcal (2) G-P(sol) polarization free energy of solvation -29.552 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.593 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.144 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.696 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.449 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds