Wall clock time and date at job start Tue Mar 31 2020 13:19:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 C 1.39599 * 120.07517 * 2 1 4 4 C 1.47844 * 120.14102 * 359.97295 * 3 2 1 5 5 O 1.21553 * 120.00238 * 57.78550 * 4 3 2 6 6 N 1.34781 * 120.00012 * 237.78349 * 4 3 2 7 7 C 1.46500 * 119.99931 * 356.04322 * 6 4 3 8 8 C 1.50696 * 109.47013 * 89.99825 * 7 6 4 9 9 H 1.07998 * 120.00171 * 359.97438 * 8 7 6 10 10 C 1.37875 * 120.00060 * 180.02562 * 8 7 6 11 11 N 1.31512 * 120.00664 * 180.02562 * 10 8 7 12 12 Si 1.86805 * 119.99914 * 359.97438 * 10 8 7 13 13 H 1.48505 * 109.46761 * 89.99950 * 12 10 8 14 14 H 1.48497 * 109.47451 * 210.00136 * 12 10 8 15 15 H 1.48500 * 109.47106 * 330.00394 * 12 10 8 16 16 C 1.46501 * 119.99966 * 176.04414 * 6 4 3 17 17 C 1.52999 * 109.47354 * 94.69802 * 16 6 4 18 18 C 1.52999 * 117.49976 * 243.49161 * 17 16 6 19 19 C 1.52993 * 117.49805 * 174.82992 * 17 16 6 20 20 C 1.39552 * 119.70995 * 179.72051 * 3 2 1 21 21 C 1.37970 * 119.85482 * 0.55132 * 20 3 2 22 22 C 1.38339 * 120.14394 * 359.69851 * 21 20 3 23 23 C 1.37931 * 120.07207 * 180.27278 * 2 1 3 24 24 N 1.48019 * 119.92723 * 0.02562 * 23 2 1 25 25 O 1.21798 * 119.99707 * 180.53522 * 24 23 2 26 26 O 1.21801 * 120.00061 * 0.53560 * 24 23 2 27 27 H 1.09002 * 109.47186 * 262.83715 * 1 2 3 28 28 H 1.09000 * 109.46936 * 22.83353 * 1 2 3 29 29 H 1.08998 * 109.46888 * 142.82916 * 1 2 3 30 30 H 1.08997 * 109.47223 * 209.99996 * 7 6 4 31 31 H 1.09000 * 109.46705 * 329.99870 * 7 6 4 32 32 H 0.96995 * 120.00767 * 179.97438 * 11 10 8 33 33 H 1.09000 * 109.47142 * 214.70024 * 16 6 4 34 34 H 1.09005 * 109.47171 * 334.69420 * 16 6 4 35 35 H 1.09005 * 115.54807 * 29.16343 * 17 16 6 36 36 H 1.09004 * 117.49531 * 0.02562 * 18 17 16 37 37 H 1.08994 * 117.49662 * 145.01477 * 18 17 16 38 38 H 1.09000 * 117.50177 * 214.97673 * 19 17 16 39 39 H 1.09000 * 117.50396 * 0.02562 * 19 17 16 40 40 H 1.07998 * 120.07304 * 180.27250 * 20 3 2 41 41 H 1.07999 * 119.93068 * 179.72402 * 21 20 3 42 42 H 1.07999 * 119.85365 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2066 1.2080 0.0000 4 6 1.4723 2.4912 -0.0006 5 8 0.6829 2.7402 0.8896 6 7 1.6780 3.3849 -0.9883 7 6 2.6916 3.1236 -2.0132 8 6 2.0635 2.3774 -3.1620 9 1 1.0144 2.1229 -3.1315 10 6 2.8285 2.0186 -4.2515 11 7 2.2804 1.3679 -5.2543 12 14 4.6433 2.4583 -4.3040 13 1 5.4366 1.3587 -3.6981 14 1 5.0648 2.6537 -5.7144 15 1 4.8713 3.7117 -3.5410 16 6 0.8880 4.6178 -1.0368 17 6 1.6578 5.7444 -0.3446 18 6 1.0372 6.3547 0.9136 19 6 1.0522 7.1485 -0.3952 20 6 3.6021 1.1992 0.0059 21 6 4.2813 -0.0018 0.0002 22 6 3.5820 -1.1954 -0.0051 23 6 2.1982 -1.1936 -0.0057 24 7 1.4581 -2.4755 -0.0124 25 8 2.0671 -3.5303 -0.0075 26 8 0.2401 -2.4755 -0.0227 27 1 -0.3634 -0.1281 1.0197 28 1 -0.3633 0.9471 -0.3988 29 1 -0.3633 -0.8189 -0.6209 30 1 3.0972 4.0693 -2.3726 31 1 3.4944 2.5231 -1.5854 32 1 2.8184 1.1158 -6.0210 33 1 0.7023 4.8896 -2.0759 34 1 -0.0626 4.4605 -0.5270 35 1 2.7442 5.6631 -0.3814 36 1 0.0806 5.9533 1.2485 37 1 1.7152 6.6753 1.7045 38 1 1.7402 7.9911 -0.4647 39 1 0.1053 7.2696 -0.9212 40 1 4.1492 2.1303 0.0104 41 1 5.3613 -0.0100 0.0003 42 1 4.1185 -2.1327 -0.0091 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000264067848.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:19:19 Heat of formation + Delta-G solvation = 9.474381 kcal Electronic energy + Delta-G solvation = -27431.825170 eV Core-core repulsion = 23574.057284 eV Total energy + Delta-G solvation = -3857.767886 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -43.39810 -41.67358 -39.77746 -38.22762 -37.83137 -36.62544 -34.52313 -34.13730 -33.18765 -30.31489 -29.32751 -27.93752 -27.09699 -25.03945 -24.07962 -23.31449 -23.18222 -21.79063 -20.83199 -19.78058 -19.61458 -19.08541 -18.73424 -17.94214 -17.56442 -17.21387 -17.08180 -16.32573 -15.99112 -15.60096 -15.09034 -15.01540 -14.69336 -14.59611 -14.42018 -14.04721 -13.92018 -13.60159 -13.50922 -13.21651 -13.10442 -12.87256 -12.58615 -12.52132 -12.42376 -12.33757 -12.30264 -12.07759 -11.75576 -11.72690 -11.35771 -11.05039 -10.86272 -10.80122 -10.52582 -10.15279 -9.55996 -8.31489 -6.39973 -1.24049 -0.28746 0.22646 0.32446 1.36420 1.40540 1.46598 1.49626 1.94663 2.32779 2.34208 2.91488 3.02848 3.20135 3.29547 3.58323 3.60542 3.80720 3.84892 4.00524 4.05904 4.11976 4.31785 4.33026 4.39158 4.46301 4.53598 4.68694 4.71995 4.74118 4.79547 4.83690 4.85114 4.88807 4.93608 5.02749 5.18100 5.24862 5.28008 5.40229 5.48051 5.57036 6.09654 6.44761 6.52164 6.64955 7.03637 7.25815 8.84955 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.010210 B = 0.005877 C = 0.004407 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2741.691453 B = 4763.002431 C = 6351.798697 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C 0.010 3.990 3 C -0.127 4.127 4 C 0.564 3.436 5 O -0.568 6.568 6 N -0.579 5.579 7 C 0.208 3.792 8 C -0.539 4.539 9 H 0.022 0.978 10 C 0.017 3.983 11 N -0.945 5.945 12 Si 0.933 3.067 13 H -0.250 1.250 14 H -0.291 1.291 15 H -0.228 1.228 16 C 0.147 3.853 17 C -0.179 4.179 18 C -0.173 4.173 19 C -0.158 4.158 20 C -0.032 4.032 21 C -0.112 4.112 22 C -0.035 4.035 23 C -0.071 4.071 24 N 0.038 4.962 25 O -0.160 6.160 26 O -0.194 6.194 27 H 0.094 0.906 28 H 0.053 0.947 29 H 0.097 0.903 30 H 0.055 0.945 31 H 0.058 0.942 32 H 0.267 0.733 33 H 0.078 0.922 34 H 0.068 0.932 35 H 0.108 0.892 36 H 0.084 0.916 37 H 0.102 0.898 38 H 0.113 0.887 39 H 0.098 0.902 40 H 0.172 0.828 41 H 0.201 0.799 42 H 0.181 0.819 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.994 4.805 11.399 14.729 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.008 3.992 3 C -0.131 4.131 4 C 0.352 3.648 5 O -0.449 6.449 6 N -0.308 5.308 7 C 0.086 3.914 8 C -0.578 4.578 9 H 0.041 0.959 10 C -0.182 4.182 11 N -0.584 5.584 12 Si 0.754 3.246 13 H -0.174 1.174 14 H -0.217 1.217 15 H -0.151 1.151 16 C 0.024 3.976 17 C -0.198 4.198 18 C -0.210 4.210 19 C -0.196 4.196 20 C -0.050 4.050 21 C -0.130 4.130 22 C -0.054 4.054 23 C -0.155 4.155 24 N 0.551 4.449 25 O -0.378 6.378 26 O -0.400 6.400 27 H 0.113 0.887 28 H 0.072 0.928 29 H 0.115 0.885 30 H 0.072 0.928 31 H 0.075 0.925 32 H 0.076 0.924 33 H 0.096 0.904 34 H 0.087 0.913 35 H 0.126 0.874 36 H 0.102 0.898 37 H 0.121 0.879 38 H 0.131 0.869 39 H 0.116 0.884 40 H 0.190 0.810 41 H 0.218 0.782 42 H 0.199 0.801 Dipole moment (debyes) X Y Z Total from point charges 7.884 5.505 11.669 15.120 hybrid contribution -0.322 -0.600 -0.885 1.117 sum 7.562 4.904 10.784 14.054 Atomic orbital electron populations 1.21247 0.89146 1.03542 1.04276 1.19721 0.97982 0.90212 0.91311 1.19753 0.95399 0.92083 1.05823 1.18125 0.81663 0.83326 0.81687 1.90715 1.37862 1.78735 1.37595 1.47853 1.38357 1.19147 1.25419 1.19958 0.87823 0.97703 0.85879 1.21445 0.96393 1.36944 1.02978 0.95930 1.25851 1.03996 0.93930 0.94383 1.70071 1.38898 1.40522 1.08891 0.85937 0.78839 0.81383 0.78454 1.17404 1.21701 1.15093 1.21024 0.93609 0.82161 1.00780 1.22613 0.99747 0.94504 1.02924 1.23017 1.02455 1.03898 0.91654 1.23042 1.03088 0.93402 1.00023 1.22090 0.91644 1.01617 0.89699 1.21626 1.03136 0.88867 0.99353 1.21579 0.89431 1.02855 0.91563 1.20942 0.93543 0.81962 1.19032 1.43684 1.01146 1.03080 0.96960 1.94451 1.69929 1.20265 1.53114 1.94461 0.96275 1.94050 1.55246 0.88744 0.92773 0.88496 0.92756 0.92478 0.92408 0.90395 0.91321 0.87413 0.89766 0.87923 0.86859 0.88355 0.81038 0.78225 0.80124 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.73 8.18 71.24 0.58 -4.15 16 2 C 0.01 0.37 5.91 -19.61 -0.12 0.25 16 3 C -0.13 -4.43 5.01 -20.09 -0.10 -4.53 16 4 C 0.56 21.61 5.94 86.79 0.52 22.12 16 5 O -0.57 -23.69 15.72 -3.88 -0.06 -23.75 16 6 N -0.58 -21.61 2.46 -829.57 -2.04 -23.65 16 7 C 0.21 8.08 4.01 85.63 0.34 8.42 16 8 C -0.54 -27.49 9.94 25.60 0.25 -27.23 16 9 H 0.02 1.36 8.06 -2.91 -0.02 1.34 16 10 C 0.02 0.89 5.47 84.65 0.46 1.35 16 11 N -0.94 -55.30 13.96 21.45 0.30 -55.00 16 12 Si 0.93 36.57 27.47 68.60 1.88 38.46 16 13 H -0.25 -8.94 7.11 99.48 0.71 -8.23 16 14 H -0.29 -11.88 7.11 99.48 0.71 -11.17 16 15 H -0.23 -7.64 6.54 99.48 0.65 -6.99 16 16 C 0.15 4.90 5.71 86.38 0.49 5.39 16 17 C -0.18 -4.72 6.01 -10.80 -0.06 -4.79 16 18 C -0.17 -4.06 10.18 30.62 0.31 -3.74 16 19 C -0.16 -3.28 10.25 30.62 0.31 -2.97 16 20 C -0.03 -0.84 7.66 22.52 0.17 -0.67 16 21 C -0.11 -2.33 10.03 22.23 0.22 -2.10 16 22 C -0.04 -0.88 9.55 22.33 0.21 -0.67 16 23 C -0.07 -2.36 6.84 36.34 0.25 -2.11 16 24 N 0.04 1.36 4.45 -46.55 -0.21 1.15 16 25 O -0.16 -5.41 18.44 18.89 0.35 -5.06 16 26 O -0.19 -7.35 15.26 18.88 0.29 -7.06 16 27 H 0.09 3.27 8.14 -2.39 -0.02 3.25 16 28 H 0.05 2.20 6.54 -2.39 -0.02 2.19 16 29 H 0.10 3.72 5.62 -2.39 -0.01 3.71 16 30 H 0.05 1.99 7.13 -2.39 -0.02 1.97 16 31 H 0.06 1.97 3.63 -2.39 -0.01 1.97 16 32 H 0.27 14.67 8.31 -92.71 -0.77 13.90 16 33 H 0.08 2.68 8.11 -2.39 -0.02 2.66 16 34 H 0.07 2.42 7.07 -2.38 -0.02 2.40 16 35 H 0.11 2.76 8.14 -2.38 -0.02 2.74 16 36 H 0.08 2.17 8.03 -2.38 -0.02 2.15 16 37 H 0.10 2.10 8.14 -2.39 -0.02 2.08 16 38 H 0.11 1.90 8.14 -2.39 -0.02 1.88 16 39 H 0.10 1.97 8.14 -2.39 -0.02 1.95 16 40 H 0.17 3.50 7.10 -2.91 -0.02 3.48 16 41 H 0.20 2.14 8.06 -2.91 -0.02 2.11 16 42 H 0.18 3.43 7.60 -2.91 -0.02 3.41 16 Total: -1.00 -68.92 355.17 5.36 -63.56 By element: Atomic # 1 Polarization: 25.79 SS G_CDS: 1.00 Total: 26.78 kcal Atomic # 6 Polarization: -19.29 SS G_CDS: 3.85 Total: -15.44 kcal Atomic # 7 Polarization: -75.55 SS G_CDS: -1.95 Total: -77.50 kcal Atomic # 8 Polarization: -36.44 SS G_CDS: 0.58 Total: -35.87 kcal Atomic # 14 Polarization: 36.57 SS G_CDS: 1.88 Total: 38.46 kcal Total: -68.92 5.36 -63.56 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000264067848.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.032 kcal (2) G-P(sol) polarization free energy of solvation -68.923 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.110 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.365 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.558 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.474 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds