Wall clock time and date at job start Tue Mar 31 2020 13:19:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38379 * 119.85206 * 2 1 4 4 C 1.37943 * 120.14191 * 179.97438 * 3 2 1 5 5 C 1.39594 * 119.85361 * 0.02562 * 4 3 2 6 6 C 1.47844 * 120.14136 * 180.02562 * 5 4 3 7 7 O 1.21555 * 119.99552 * 123.20596 * 6 5 4 8 8 N 1.34773 * 120.00461 * 303.21115 * 6 5 4 9 9 C 1.46502 * 119.99796 * 4.15579 * 8 6 5 10 10 C 1.50706 * 109.46649 * 93.02802 * 9 8 6 11 11 H 1.07997 * 119.99876 * 359.97438 * 10 9 8 12 12 C 1.37874 * 119.99743 * 180.02562 * 10 9 8 13 13 N 1.31513 * 120.00191 * 359.97438 * 12 10 9 14 14 Si 1.86798 * 119.99915 * 179.97438 * 12 10 9 15 15 H 1.48502 * 109.46966 * 60.00384 * 14 12 10 16 16 H 1.48500 * 109.47210 * 179.97438 * 14 12 10 17 17 H 1.48497 * 109.47445 * 299.99874 * 14 12 10 18 18 C 1.46497 * 119.99897 * 184.16668 * 8 6 5 19 19 C 1.52999 * 109.47722 * 85.28225 * 18 8 6 20 20 C 1.53001 * 117.49917 * 245.65484 * 19 18 8 21 21 C 1.53001 * 117.50224 * 176.99199 * 19 18 8 22 22 C 1.39553 * 119.70954 * 0.02562 * 5 4 3 23 23 C 1.37978 * 119.85646 * 359.70193 * 22 5 4 24 24 N 1.48011 * 119.93340 * 180.31461 * 23 22 5 25 25 O 1.21805 * 119.99625 * 6.60685 * 24 23 22 26 26 O 1.21799 * 120.00422 * 186.60293 * 24 23 22 27 27 H 1.09004 * 109.46941 * 97.04053 * 1 2 3 28 28 H 1.09004 * 109.46852 * 337.04591 * 1 2 3 29 29 H 1.08994 * 109.47152 * 217.04277 * 1 2 3 30 30 H 1.08004 * 119.92928 * 0.02562 * 3 2 1 31 31 H 1.08006 * 120.06778 * 180.02562 * 4 3 2 32 32 H 1.08996 * 109.47285 * 213.02249 * 9 8 6 33 33 H 1.08995 * 109.47293 * 333.02760 * 9 8 6 34 34 H 0.97001 * 120.00295 * 180.02562 * 13 12 10 35 35 H 1.09006 * 109.46581 * 205.28215 * 18 8 6 36 36 H 1.08998 * 109.47170 * 325.27998 * 18 8 6 37 37 H 1.08999 * 115.54627 * 31.32254 * 19 18 8 38 38 H 1.08992 * 117.49557 * 0.02562 * 20 19 18 39 39 H 1.08997 * 117.49920 * 145.01808 * 20 19 18 40 40 H 1.08993 * 117.49888 * 214.98353 * 21 19 18 41 41 H 1.09004 * 117.49587 * 0.02562 * 21 19 18 42 42 H 1.08002 * 120.07191 * 179.97438 * 22 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1958 1.2002 0.0000 4 6 3.5752 1.2072 0.0005 5 6 4.2762 0.0000 0.0005 6 6 5.7547 0.0000 0.0017 7 8 6.3617 -0.5769 0.8827 8 7 6.4294 0.6398 -0.9740 9 6 5.7005 1.4112 -1.9840 10 6 5.6040 2.8494 -1.5443 11 1 6.0414 3.1578 -0.6063 12 6 4.9564 3.7712 -2.3392 13 7 4.4234 3.3955 -3.4813 14 14 4.8361 5.5538 -1.7940 15 1 6.2014 6.1154 -1.6329 16 1 4.0975 6.3358 -2.8178 17 1 4.1144 5.6276 -0.4983 18 6 7.8915 0.5636 -1.0247 19 6 8.3106 -0.7021 -1.7751 20 6 9.0463 -1.7834 -0.9809 21 6 9.8073 -0.9286 -1.9976 22 6 3.5754 -1.2068 -0.0006 23 6 2.1956 -1.1998 0.0046 24 7 1.4506 -2.4787 0.0105 25 8 2.0500 -3.5321 0.1322 26 8 0.2382 -2.4779 -0.1062 27 1 -0.3633 -0.1260 -1.0200 28 1 -0.3633 0.9463 0.4008 29 1 -0.3633 -0.8202 0.6190 30 1 1.6522 2.1334 0.0004 31 1 4.1116 2.1446 0.0010 32 1 6.2304 1.3567 -2.9349 33 1 4.6983 0.9993 -2.1024 34 1 3.9681 4.0441 -4.0407 35 1 8.2831 1.4393 -1.5422 36 1 8.2891 0.5329 -0.0103 37 1 7.6298 -1.0301 -2.5606 38 1 9.2312 -1.5931 0.0762 39 1 8.8497 -2.8226 -1.2442 40 1 10.1111 -1.4059 -2.9292 41 1 10.4934 -0.1761 -1.6089 42 1 4.1118 -2.1442 -0.0010 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000264073711.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:19:24 Heat of formation + Delta-G solvation = 11.344197 kcal Electronic energy + Delta-G solvation = -26994.067912 eV Core-core repulsion = 23136.381108 eV Total energy + Delta-G solvation = -3857.686804 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -42.06909 -40.08084 -38.52304 -36.96245 -36.46664 -35.01795 -32.89855 -32.73589 -31.71547 -28.39201 -27.90018 -26.57100 -25.50278 -23.27812 -22.52791 -22.32978 -22.10651 -20.71640 -19.65150 -18.52967 -17.97823 -17.42150 -16.78428 -16.39937 -16.14112 -15.60417 -15.42478 -14.70462 -14.61544 -14.50728 -13.98423 -13.78726 -13.40988 -13.11251 -12.71159 -12.53748 -12.32233 -12.15834 -11.97014 -11.70433 -11.52937 -11.38594 -11.31969 -11.22221 -11.11358 -10.97208 -10.93992 -10.53689 -10.41805 -10.25016 -9.94836 -9.73056 -9.45068 -9.28227 -8.90465 -8.73719 -7.99084 -6.41234 -4.51120 0.10833 0.95550 1.58862 1.60630 2.99286 3.06548 3.14574 3.16505 3.42469 3.70679 4.05678 4.11768 4.48393 4.54640 4.86971 4.91012 5.00405 5.07322 5.11597 5.16236 5.23384 5.36824 5.52517 5.59422 5.64153 5.70294 5.78540 5.84749 6.00291 6.05812 6.07817 6.10562 6.27898 6.30177 6.35205 6.42049 6.46768 6.59289 6.78215 6.96278 7.27925 7.51221 7.79241 7.86242 8.04362 8.51083 8.69005 9.16696 10.64460 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.008698 B = 0.005863 C = 0.003789 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3218.406785 B = 4774.787781 C = 7387.177938 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.006 4.006 3 C -0.129 4.129 4 C -0.003 4.003 5 C -0.118 4.118 6 C 0.561 3.439 7 O -0.553 6.553 8 N -0.582 5.582 9 C 0.231 3.769 10 C -0.550 4.550 11 H 0.065 0.935 12 C 0.071 3.929 13 N -0.880 5.880 14 Si 0.893 3.107 15 H -0.274 1.274 16 H -0.284 1.284 17 H -0.273 1.273 18 C 0.152 3.848 19 C -0.164 4.164 20 C -0.173 4.173 21 C -0.179 4.179 22 C -0.014 4.014 23 C -0.065 4.065 24 N 0.040 4.960 25 O -0.176 6.176 26 O -0.167 6.167 27 H 0.088 0.912 28 H 0.072 0.928 29 H 0.096 0.904 30 H 0.148 0.852 31 H 0.175 0.825 32 H 0.040 0.960 33 H 0.039 0.961 34 H 0.269 0.731 35 H 0.088 0.912 36 H 0.074 0.926 37 H 0.103 0.897 38 H 0.095 0.905 39 H 0.087 0.913 40 H 0.091 0.909 41 H 0.093 0.907 42 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.106 -3.693 3.553 5.243 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.008 4.008 3 C -0.147 4.147 4 C -0.021 4.021 5 C -0.122 4.122 6 C 0.348 3.652 7 O -0.433 6.433 8 N -0.311 5.311 9 C 0.112 3.888 10 C -0.588 4.588 11 H 0.083 0.917 12 C -0.134 4.134 13 N -0.517 5.517 14 Si 0.720 3.280 15 H -0.199 1.199 16 H -0.210 1.210 17 H -0.199 1.199 18 C 0.028 3.972 19 C -0.183 4.183 20 C -0.210 4.210 21 C -0.216 4.216 22 C -0.034 4.034 23 C -0.148 4.148 24 N 0.555 4.445 25 O -0.388 6.388 26 O -0.380 6.380 27 H 0.106 0.894 28 H 0.091 0.909 29 H 0.114 0.886 30 H 0.166 0.834 31 H 0.192 0.808 32 H 0.058 0.942 33 H 0.057 0.943 34 H 0.079 0.921 35 H 0.106 0.894 36 H 0.093 0.907 37 H 0.121 0.879 38 H 0.114 0.886 39 H 0.106 0.894 40 H 0.109 0.891 41 H 0.111 0.889 42 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges -0.537 -3.318 3.799 5.072 hybrid contribution -0.273 0.750 -0.137 0.810 sum -0.810 -2.568 3.662 4.546 Atomic orbital electron populations 1.21308 0.88815 1.04158 1.04472 1.19987 0.97834 0.90565 0.92374 1.21126 0.94218 0.96884 1.02495 1.22521 0.94210 0.99871 0.85538 1.19844 0.94751 0.92735 1.04893 1.17965 0.86084 0.79106 0.82074 1.90731 1.69443 1.46119 1.37041 1.48128 1.06470 1.48179 1.28328 1.19584 0.92397 0.90207 0.86631 1.21417 1.37548 0.93128 1.06714 0.91729 1.24948 0.94817 0.99050 0.94596 1.69908 1.35163 1.35404 1.11207 0.86622 0.78698 0.84097 0.78570 1.19896 1.20951 1.19853 1.20896 0.80329 0.95822 1.00106 1.22766 0.94604 0.98473 1.02461 1.22974 1.04289 0.96191 0.97545 1.22914 0.94337 1.03474 1.00894 1.20819 0.90685 0.99697 0.92207 1.20632 0.91951 0.83032 1.19223 1.43536 1.00968 1.02807 0.97200 1.94531 1.70470 1.19961 1.53888 1.94425 0.96524 1.93766 1.53331 0.89374 0.90897 0.88614 0.83400 0.80813 0.94240 0.94261 0.92116 0.89408 0.90724 0.87916 0.88622 0.89425 0.89096 0.88854 0.83111 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.54 8.67 36.01 0.31 -1.23 16 2 C -0.01 -0.09 5.89 -104.53 -0.62 -0.70 16 3 C -0.13 -1.90 9.65 -39.64 -0.38 -2.28 16 4 C 0.00 -0.06 7.80 -39.18 -0.31 -0.36 16 5 C -0.12 -2.14 4.59 -104.97 -0.48 -2.62 16 6 C 0.56 11.03 7.12 -12.33 -0.09 10.94 16 7 O -0.55 -11.82 16.72 5.32 0.09 -11.73 16 8 N -0.58 -11.23 2.46 -176.18 -0.43 -11.66 16 9 C 0.23 4.96 4.67 -5.19 -0.02 4.93 16 10 C -0.55 -12.46 6.85 -34.44 -0.24 -12.69 16 11 H 0.06 1.47 7.81 -52.49 -0.41 1.06 16 12 C 0.07 1.66 5.46 -17.82 -0.10 1.57 16 13 N -0.88 -21.97 13.29 55.43 0.74 -21.23 16 14 Si 0.89 18.35 29.54 -169.99 -5.02 13.33 16 15 H -0.27 -5.70 7.11 56.52 0.40 -5.30 16 16 H -0.28 -5.91 7.11 56.52 0.40 -5.51 16 17 H -0.27 -5.46 7.11 56.52 0.40 -5.06 16 18 C 0.15 2.59 5.69 -4.04 -0.02 2.57 16 19 C -0.16 -2.50 5.98 -90.62 -0.54 -3.05 16 20 C -0.17 -2.39 10.18 -26.69 -0.27 -2.66 16 21 C -0.18 -2.24 10.26 -26.69 -0.27 -2.51 16 22 C -0.01 -0.24 9.29 -39.19 -0.36 -0.61 16 23 C -0.06 -1.05 6.82 -80.01 -0.55 -1.60 16 24 N 0.04 0.68 4.45 33.93 0.15 0.83 16 25 O -0.18 -3.10 18.46 -29.46 -0.54 -3.64 16 26 O -0.17 -2.69 15.33 -29.46 -0.45 -3.14 16 27 H 0.09 1.01 8.14 -51.93 -0.42 0.58 16 28 H 0.07 0.69 8.03 -51.93 -0.42 0.27 16 29 H 0.10 1.16 5.84 -51.93 -0.30 0.85 16 30 H 0.15 1.81 8.05 -52.48 -0.42 1.39 16 31 H 0.17 3.20 5.53 -52.48 -0.29 2.91 16 32 H 0.04 0.91 8.09 -51.93 -0.42 0.49 16 33 H 0.04 0.89 5.99 -51.93 -0.31 0.57 16 34 H 0.27 6.46 8.31 -40.82 -0.34 6.12 16 35 H 0.09 1.48 8.04 -51.93 -0.42 1.06 16 36 H 0.07 1.28 7.25 -51.93 -0.38 0.91 16 37 H 0.10 1.66 8.14 -51.93 -0.42 1.24 16 38 H 0.10 1.37 8.04 -51.93 -0.42 0.95 16 39 H 0.09 1.14 8.14 -51.93 -0.42 0.72 16 40 H 0.09 1.03 8.14 -51.93 -0.42 0.60 16 41 H 0.09 1.08 8.14 -51.93 -0.42 0.66 16 42 H 0.15 2.51 7.62 -52.49 -0.40 2.11 16 LS Contribution 359.82 15.07 5.42 5.42 Total: -1.00 -26.08 359.82 -9.42 -35.50 By element: Atomic # 1 Polarization: 12.07 SS G_CDS: -5.43 Total: 6.63 kcal Atomic # 6 Polarization: -6.37 SS G_CDS: -3.94 Total: -10.31 kcal Atomic # 7 Polarization: -32.52 SS G_CDS: 0.45 Total: -32.06 kcal Atomic # 8 Polarization: -17.61 SS G_CDS: -0.91 Total: -18.52 kcal Atomic # 14 Polarization: 18.35 SS G_CDS: -5.02 Total: 13.33 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -26.08 -9.42 -35.50 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000264073711.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.846 kcal (2) G-P(sol) polarization free energy of solvation -26.077 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.769 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.425 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.502 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.344 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds