Wall clock time and date at job start Tue Mar 31 2020 13:19:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38379 * 119.85206 * 2 1 4 4 C 1.37943 * 120.14191 * 179.97438 * 3 2 1 5 5 C 1.39594 * 119.85361 * 0.02562 * 4 3 2 6 6 C 1.47844 * 120.14136 * 180.02562 * 5 4 3 7 7 O 1.21555 * 119.99552 * 123.20596 * 6 5 4 8 8 N 1.34773 * 120.00461 * 303.21115 * 6 5 4 9 9 C 1.46502 * 119.99796 * 4.15579 * 8 6 5 10 10 C 1.50706 * 109.46649 * 93.02802 * 9 8 6 11 11 H 1.07997 * 119.99876 * 359.97438 * 10 9 8 12 12 C 1.37874 * 119.99743 * 180.02562 * 10 9 8 13 13 N 1.31513 * 120.00191 * 359.97438 * 12 10 9 14 14 Si 1.86798 * 119.99915 * 179.97438 * 12 10 9 15 15 H 1.48502 * 109.46966 * 60.00384 * 14 12 10 16 16 H 1.48500 * 109.47210 * 179.97438 * 14 12 10 17 17 H 1.48497 * 109.47445 * 299.99874 * 14 12 10 18 18 C 1.46497 * 119.99897 * 184.16668 * 8 6 5 19 19 C 1.52999 * 109.47722 * 85.28225 * 18 8 6 20 20 C 1.53001 * 117.49917 * 245.65484 * 19 18 8 21 21 C 1.53001 * 117.50224 * 176.99199 * 19 18 8 22 22 C 1.39553 * 119.70954 * 0.02562 * 5 4 3 23 23 C 1.37978 * 119.85646 * 359.70193 * 22 5 4 24 24 N 1.48011 * 119.93340 * 180.31461 * 23 22 5 25 25 O 1.21805 * 119.99625 * 6.60685 * 24 23 22 26 26 O 1.21799 * 120.00422 * 186.60293 * 24 23 22 27 27 H 1.09004 * 109.46941 * 97.04053 * 1 2 3 28 28 H 1.09004 * 109.46852 * 337.04591 * 1 2 3 29 29 H 1.08994 * 109.47152 * 217.04277 * 1 2 3 30 30 H 1.08004 * 119.92928 * 0.02562 * 3 2 1 31 31 H 1.08006 * 120.06778 * 180.02562 * 4 3 2 32 32 H 1.08996 * 109.47285 * 213.02249 * 9 8 6 33 33 H 1.08995 * 109.47293 * 333.02760 * 9 8 6 34 34 H 0.97001 * 120.00295 * 180.02562 * 13 12 10 35 35 H 1.09006 * 109.46581 * 205.28215 * 18 8 6 36 36 H 1.08998 * 109.47170 * 325.27998 * 18 8 6 37 37 H 1.08999 * 115.54627 * 31.32254 * 19 18 8 38 38 H 1.08992 * 117.49557 * 0.02562 * 20 19 18 39 39 H 1.08997 * 117.49920 * 145.01808 * 20 19 18 40 40 H 1.08993 * 117.49888 * 214.98353 * 21 19 18 41 41 H 1.09004 * 117.49587 * 0.02562 * 21 19 18 42 42 H 1.08002 * 120.07191 * 179.97438 * 22 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1958 1.2002 0.0000 4 6 3.5752 1.2072 0.0005 5 6 4.2762 0.0000 0.0005 6 6 5.7547 0.0000 0.0017 7 8 6.3617 -0.5769 0.8827 8 7 6.4294 0.6398 -0.9740 9 6 5.7005 1.4112 -1.9840 10 6 5.6040 2.8494 -1.5443 11 1 6.0414 3.1578 -0.6063 12 6 4.9564 3.7712 -2.3392 13 7 4.4234 3.3955 -3.4813 14 14 4.8361 5.5538 -1.7940 15 1 6.2014 6.1154 -1.6329 16 1 4.0975 6.3358 -2.8178 17 1 4.1144 5.6276 -0.4983 18 6 7.8915 0.5636 -1.0247 19 6 8.3106 -0.7021 -1.7751 20 6 9.0463 -1.7834 -0.9809 21 6 9.8073 -0.9286 -1.9976 22 6 3.5754 -1.2068 -0.0006 23 6 2.1956 -1.1998 0.0046 24 7 1.4506 -2.4787 0.0105 25 8 2.0500 -3.5321 0.1322 26 8 0.2382 -2.4779 -0.1062 27 1 -0.3633 -0.1260 -1.0200 28 1 -0.3633 0.9463 0.4008 29 1 -0.3633 -0.8202 0.6190 30 1 1.6522 2.1334 0.0004 31 1 4.1116 2.1446 0.0010 32 1 6.2304 1.3567 -2.9349 33 1 4.6983 0.9993 -2.1024 34 1 3.9681 4.0441 -4.0407 35 1 8.2831 1.4393 -1.5422 36 1 8.2891 0.5329 -0.0103 37 1 7.6298 -1.0301 -2.5606 38 1 9.2312 -1.5931 0.0762 39 1 8.8497 -2.8226 -1.2442 40 1 10.1111 -1.4059 -2.9292 41 1 10.4934 -0.1761 -1.6089 42 1 4.1118 -2.1442 -0.0010 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000264073711.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:19:23 Heat of formation + Delta-G solvation = 1.258491 kcal Electronic energy + Delta-G solvation = -26994.505261 eV Core-core repulsion = 23136.381108 eV Total energy + Delta-G solvation = -3858.124153 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -43.39497 -41.52883 -39.87474 -38.23303 -37.79772 -36.61472 -34.49175 -34.13845 -33.00541 -29.81827 -29.34959 -28.02371 -26.80067 -24.99459 -23.80185 -23.62646 -23.20133 -22.01033 -21.01843 -19.86254 -19.46563 -18.75531 -18.53362 -17.86416 -17.63716 -16.92642 -16.77224 -16.28637 -15.94066 -15.85637 -15.23824 -14.91923 -14.70158 -14.57484 -14.27698 -13.84308 -13.76936 -13.39847 -13.25247 -13.20566 -12.92753 -12.82592 -12.62779 -12.58535 -12.52882 -12.37035 -12.28922 -12.11961 -11.79839 -11.69392 -11.37177 -11.06746 -10.83441 -10.65916 -10.54774 -10.12466 -9.59960 -8.21681 -6.37053 -1.20096 -0.34539 0.27615 0.29547 1.44226 1.47451 1.51586 1.55129 2.00680 2.29836 2.43018 2.89560 3.08483 3.25393 3.28002 3.62376 3.76274 3.79713 3.83369 3.97466 4.06416 4.12445 4.33897 4.35149 4.48053 4.63477 4.69704 4.73340 4.77677 4.79105 4.83484 4.99248 5.01649 5.04740 5.08154 5.14932 5.20483 5.23699 5.25369 5.53130 5.61118 5.73213 5.99666 6.41409 6.53799 6.73671 7.08424 7.34736 8.83618 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.008698 B = 0.005863 C = 0.003789 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3218.406785 B = 4774.787781 C = 7387.177938 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.005 3.995 3 C -0.120 4.120 4 C -0.012 4.012 5 C -0.136 4.136 6 C 0.559 3.441 7 O -0.576 6.576 8 N -0.583 5.583 9 C 0.249 3.751 10 C -0.547 4.547 11 H 0.061 0.939 12 C 0.035 3.965 13 N -0.911 5.911 14 Si 0.948 3.052 15 H -0.277 1.277 16 H -0.286 1.286 17 H -0.260 1.260 18 C 0.151 3.849 19 C -0.187 4.187 20 C -0.173 4.173 21 C -0.152 4.152 22 C -0.019 4.019 23 C -0.073 4.073 24 N 0.040 4.960 25 O -0.216 6.216 26 O -0.135 6.135 27 H 0.097 0.903 28 H 0.104 0.896 29 H 0.094 0.906 30 H 0.180 0.820 31 H 0.161 0.839 32 H 0.019 0.981 33 H 0.028 0.972 34 H 0.269 0.731 35 H 0.087 0.913 36 H 0.071 0.929 37 H 0.089 0.911 38 H 0.089 0.911 39 H 0.095 0.905 40 H 0.109 0.891 41 H 0.107 0.893 42 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.166 -2.649 3.820 5.128 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C 0.003 3.997 3 C -0.138 4.138 4 C -0.030 4.030 5 C -0.140 4.140 6 C 0.347 3.653 7 O -0.458 6.458 8 N -0.311 5.311 9 C 0.128 3.872 10 C -0.585 4.585 11 H 0.079 0.921 12 C -0.167 4.167 13 N -0.549 5.549 14 Si 0.773 3.227 15 H -0.203 1.203 16 H -0.212 1.212 17 H -0.184 1.184 18 C 0.028 3.972 19 C -0.206 4.206 20 C -0.210 4.210 21 C -0.189 4.189 22 C -0.039 4.039 23 C -0.157 4.157 24 N 0.553 4.447 25 O -0.417 6.417 26 O -0.357 6.357 27 H 0.116 0.884 28 H 0.122 0.878 29 H 0.113 0.887 30 H 0.198 0.802 31 H 0.179 0.821 32 H 0.038 0.962 33 H 0.046 0.954 34 H 0.078 0.922 35 H 0.105 0.895 36 H 0.090 0.910 37 H 0.108 0.892 38 H 0.108 0.892 39 H 0.114 0.886 40 H 0.127 0.873 41 H 0.125 0.875 42 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -1.500 -2.336 4.086 4.940 hybrid contribution -0.031 0.435 -0.223 0.490 sum -1.531 -1.901 3.863 4.569 Atomic orbital electron populations 1.21432 0.86190 1.05946 1.05123 1.20382 0.99572 0.89528 0.90171 1.21439 0.93169 0.98239 1.00990 1.22438 0.95442 0.98734 0.86417 1.19741 0.93859 0.93607 1.06771 1.18227 0.86925 0.78547 0.81619 1.90701 1.70202 1.47095 1.37787 1.48133 1.07380 1.47832 1.27764 1.19232 0.91673 0.90095 0.86174 1.21505 1.37041 0.93563 1.06398 0.92060 1.25535 0.94472 1.02206 0.94473 1.70007 1.36200 1.36480 1.12240 0.85754 0.78385 0.79951 0.78580 1.20288 1.21182 1.18446 1.20984 0.79087 0.96916 1.00188 1.22627 0.96607 0.98416 1.02936 1.22995 1.04181 0.96339 0.97501 1.23033 0.92179 1.02634 1.01045 1.20752 0.91346 0.99195 0.92641 1.20769 0.91765 0.83471 1.19729 1.43588 1.01033 1.02867 0.97176 1.94551 1.70677 1.20300 1.56216 1.94395 0.96363 1.93729 1.51262 0.88424 0.87778 0.88727 0.80233 0.82120 0.96243 0.95369 0.92175 0.89507 0.91033 0.89230 0.89247 0.88648 0.87262 0.87514 0.83654 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.59 8.67 71.24 0.62 -1.97 16 2 C 0.01 0.14 5.89 -19.81 -0.12 0.02 16 3 C -0.12 -3.28 9.65 22.23 0.21 -3.06 16 4 C -0.01 -0.41 7.80 22.53 0.18 -0.23 16 5 C -0.14 -5.01 4.59 -20.09 -0.09 -5.10 16 6 C 0.56 22.69 7.12 86.79 0.62 23.31 16 7 O -0.58 -25.39 16.72 -3.89 -0.07 -25.46 16 8 N -0.58 -23.19 2.46 -829.57 -2.04 -25.24 16 9 C 0.25 10.93 4.67 85.63 0.40 11.33 16 10 C -0.55 -24.88 6.85 25.60 0.18 -24.70 16 11 H 0.06 2.80 7.81 -2.91 -0.02 2.77 16 12 C 0.04 1.64 5.46 84.65 0.46 2.10 16 13 N -0.91 -45.41 13.29 21.45 0.28 -45.13 16 14 Si 0.95 36.82 29.54 68.60 2.03 38.84 16 15 H -0.28 -10.89 7.11 99.48 0.71 -10.18 16 16 H -0.29 -11.18 7.11 99.48 0.71 -10.47 16 17 H -0.26 -9.49 7.11 99.48 0.71 -8.78 16 18 C 0.15 5.27 5.69 86.38 0.49 5.77 16 19 C -0.19 -5.77 5.98 -10.79 -0.06 -5.83 16 20 C -0.17 -4.72 10.18 30.62 0.31 -4.41 16 21 C -0.15 -3.58 10.26 30.62 0.31 -3.26 16 22 C -0.02 -0.68 9.29 22.53 0.21 -0.47 16 23 C -0.07 -2.34 6.82 36.34 0.25 -2.09 16 24 N 0.04 1.30 4.45 -46.56 -0.21 1.09 16 25 O -0.22 -7.68 18.46 18.88 0.35 -7.33 16 26 O -0.13 -4.05 15.33 18.89 0.29 -3.76 16 27 H 0.10 1.85 8.14 -2.38 -0.02 1.83 16 28 H 0.10 1.46 8.03 -2.39 -0.02 1.44 16 29 H 0.09 1.95 5.84 -2.39 -0.01 1.94 16 30 H 0.18 3.72 8.05 -2.91 -0.02 3.70 16 31 H 0.16 5.89 5.53 -2.91 -0.02 5.88 16 32 H 0.02 0.93 8.09 -2.39 -0.02 0.91 16 33 H 0.03 1.31 5.99 -2.39 -0.01 1.29 16 34 H 0.27 12.86 8.31 -92.71 -0.77 12.09 16 35 H 0.09 2.98 8.04 -2.38 -0.02 2.96 16 36 H 0.07 2.52 7.25 -2.39 -0.02 2.51 16 37 H 0.09 2.99 8.14 -2.39 -0.02 2.97 16 38 H 0.09 2.55 8.04 -2.39 -0.02 2.53 16 39 H 0.10 2.43 8.14 -2.39 -0.02 2.41 16 40 H 0.11 2.21 8.14 -2.39 -0.02 2.19 16 41 H 0.11 2.25 8.14 -2.39 -0.02 2.23 16 42 H 0.15 5.10 7.62 -2.91 -0.02 5.08 16 Total: -1.00 -55.94 359.82 5.64 -50.30 By element: Atomic # 1 Polarization: 24.24 SS G_CDS: 1.05 Total: 25.29 kcal Atomic # 6 Polarization: -12.56 SS G_CDS: 3.97 Total: -8.60 kcal Atomic # 7 Polarization: -67.31 SS G_CDS: -1.97 Total: -69.28 kcal Atomic # 8 Polarization: -37.12 SS G_CDS: 0.57 Total: -36.55 kcal Atomic # 14 Polarization: 36.82 SS G_CDS: 2.03 Total: 38.84 kcal Total: -55.94 5.64 -50.30 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000264073711.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.559 kcal (2) G-P(sol) polarization free energy of solvation -55.945 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.385 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.644 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -50.301 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.258 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds