Wall clock time and date at job start Tue Mar 31 2020 13:19:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.37979 * 119.92920 * 2 1 4 4 C 1.39552 * 119.85368 * 179.97438 * 3 2 1 5 5 C 1.47847 * 120.14559 * 179.97438 * 4 3 2 6 6 O 1.21557 * 119.99867 * 330.62505 * 5 4 3 7 7 N 1.34771 * 120.00158 * 150.62710 * 5 4 3 8 8 C 1.46501 * 119.99972 * 6.33061 * 7 5 4 9 9 C 1.50697 * 109.47440 * 98.67760 * 8 7 5 10 10 H 1.08001 * 120.00170 * 359.97438 * 9 8 7 11 11 C 1.37879 * 120.00042 * 180.02562 * 9 8 7 12 12 N 1.31516 * 120.00024 * 359.97438 * 11 9 8 13 13 Si 1.86797 * 119.99830 * 179.97438 * 11 9 8 14 14 H 1.48494 * 109.47365 * 359.97438 * 13 11 9 15 15 H 1.48501 * 109.47471 * 119.99775 * 13 11 9 16 16 H 1.48503 * 109.47046 * 239.99518 * 13 11 9 17 17 C 1.46508 * 120.00046 * 186.32465 * 7 5 4 18 18 C 1.52994 * 109.46734 * 94.63894 * 17 7 5 19 19 C 1.53004 * 117.49804 * 244.37240 * 18 17 7 20 20 C 1.53002 * 117.49971 * 175.71221 * 18 17 7 21 21 C 1.39601 * 119.71282 * 0.02562 * 4 3 2 22 22 C 1.37932 * 119.84875 * 0.24638 * 21 4 3 23 23 C 1.38338 * 119.92632 * 180.02562 * 2 1 3 24 24 N 1.48013 * 119.85493 * 359.97438 * 23 2 1 25 25 O 1.21802 * 120.00217 * 186.09243 * 24 23 2 26 26 O 1.21797 * 119.99676 * 6.09074 * 24 23 2 27 27 H 1.08996 * 109.47236 * 96.69129 * 1 2 3 28 28 H 1.09004 * 109.47121 * 216.68776 * 1 2 3 29 29 H 1.09003 * 109.47088 * 336.68869 * 1 2 3 30 30 H 1.08000 * 120.07288 * 359.97438 * 3 2 1 31 31 H 1.09006 * 109.46942 * 218.67476 * 8 7 5 32 32 H 1.08998 * 109.47217 * 338.67377 * 8 7 5 33 33 H 0.96992 * 119.99738 * 180.02562 * 12 11 9 34 34 H 1.08996 * 109.47264 * 214.63860 * 17 7 5 35 35 H 1.09001 * 109.47137 * 334.64027 * 17 7 5 36 36 H 1.09003 * 115.55536 * 30.04381 * 18 17 7 37 37 H 1.08997 * 117.49659 * 0.02562 * 19 18 17 38 38 H 1.09001 * 117.49532 * 145.02468 * 19 18 17 39 39 H 1.09001 * 117.50397 * 214.97920 * 20 18 17 40 40 H 1.09009 * 117.49585 * 0.02562 * 20 18 17 41 41 H 1.08004 * 120.07397 * 179.97438 * 21 4 3 42 42 H 1.08003 * 119.92295 * 179.74532 * 22 21 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1954 1.1958 0.0000 4 6 3.5909 1.1939 0.0005 5 6 4.3351 2.4715 0.0000 6 8 3.8485 3.4580 -0.5173 7 7 5.5529 2.5422 0.5729 8 6 6.1991 1.3261 1.0724 9 6 7.1912 0.8291 0.0527 10 1 7.3264 1.3653 -0.8750 11 6 7.9253 -0.3107 0.3035 12 7 7.7603 -0.9639 1.4330 13 14 9.1545 -0.9270 -0.9609 14 1 9.1508 -0.0211 -2.1374 15 1 10.5122 -0.9530 -0.3598 16 1 8.7773 -2.2975 -1.3908 17 6 6.2306 3.8353 0.6959 18 6 5.9414 4.4333 2.0742 19 6 5.1458 5.7393 2.1248 20 6 6.6443 5.7429 2.4376 21 6 4.2812 -0.0194 0.0005 22 6 3.5809 -1.2077 -0.0051 23 6 2.1971 -1.1989 -0.0005 24 7 1.4521 -2.4779 -0.0005 25 8 2.0520 -3.5321 0.1109 26 8 0.2393 -2.4762 -0.1120 27 1 -0.3633 -0.1197 -1.0206 28 1 -0.3633 -0.8241 0.6140 29 1 -0.3633 0.9438 0.4067 30 1 1.6554 2.1311 -0.0004 31 1 6.7173 1.5471 2.0057 32 1 5.4444 0.5597 1.2486 33 1 8.2770 -1.7655 1.6096 34 1 7.3051 3.6950 0.5789 35 1 5.8661 4.5116 -0.0773 36 1 5.7761 3.7120 2.8745 37 1 4.8281 6.1721 1.1762 38 1 4.4574 5.8772 2.9586 39 1 6.9410 5.8832 3.4770 40 1 7.3124 6.1785 1.6946 41 1 5.3612 -0.0277 0.0005 42 1 4.1138 -2.1471 -0.0093 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000264099261.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:19:29 Heat of formation + Delta-G solvation = 35.294671 kcal Electronic energy + Delta-G solvation = -26913.326346 eV Core-core repulsion = 23056.678113 eV Total energy + Delta-G solvation = -3856.648234 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -42.05929 -40.27532 -38.46947 -37.01340 -36.48082 -35.38115 -32.91281 -32.78269 -31.73833 -28.46855 -27.68074 -26.97042 -25.41215 -23.47344 -22.65561 -22.22160 -22.01322 -20.59698 -19.16312 -18.83823 -18.47659 -17.40678 -16.90740 -16.61417 -16.22829 -15.38674 -14.92125 -14.74692 -14.65772 -14.44048 -13.90925 -13.87734 -13.52897 -13.34563 -12.71770 -12.66925 -12.59506 -12.15906 -12.14386 -11.66336 -11.50140 -11.37995 -11.20976 -11.12912 -11.10193 -10.95164 -10.58669 -10.54249 -10.31323 -10.17828 -9.96668 -9.74399 -9.49775 -9.25601 -8.98208 -8.59743 -8.03422 -6.48963 -4.60789 -0.05289 1.21782 1.42368 1.62979 2.96988 3.06523 3.17410 3.19961 3.44331 3.77107 4.00505 4.10378 4.53498 4.57725 4.79020 4.82537 4.95269 5.06473 5.11321 5.18324 5.20865 5.42986 5.54897 5.59236 5.63455 5.74225 5.77600 5.90967 6.01133 6.02801 6.09626 6.12867 6.16065 6.24518 6.34728 6.40462 6.52869 6.64451 6.85293 6.88394 7.20035 7.46128 7.67457 7.87570 7.99415 8.45602 8.63294 9.09262 10.55281 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.009291 B = 0.005404 C = 0.003665 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3013.070887 B = 5180.321768 C = 7638.736644 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.042 4.042 3 C -0.076 4.076 4 C -0.074 4.074 5 C 0.553 3.447 6 O -0.557 6.557 7 N -0.579 5.579 8 C 0.202 3.798 9 C -0.553 4.553 10 H 0.069 0.931 11 C 0.071 3.929 12 N -0.877 5.877 13 Si 0.897 3.103 14 H -0.269 1.269 15 H -0.279 1.279 16 H -0.278 1.278 17 C 0.148 3.852 18 C -0.162 4.162 19 C -0.178 4.178 20 C -0.177 4.177 21 C -0.103 4.103 22 C -0.063 4.063 23 C -0.037 4.037 24 N 0.035 4.965 25 O -0.169 6.169 26 O -0.169 6.169 27 H 0.084 0.916 28 H 0.095 0.905 29 H 0.070 0.930 30 H 0.149 0.851 31 H 0.040 0.960 32 H 0.065 0.935 33 H 0.272 0.728 34 H 0.087 0.913 35 H 0.080 0.920 36 H 0.105 0.895 37 H 0.095 0.905 38 H 0.087 0.913 39 H 0.091 0.909 40 H 0.093 0.907 41 H 0.223 0.777 42 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.627 5.195 0.695 8.449 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.044 4.044 3 C -0.096 4.096 4 C -0.077 4.077 5 C 0.341 3.659 6 O -0.438 6.438 7 N -0.307 5.307 8 C 0.083 3.917 9 C -0.590 4.590 10 H 0.087 0.913 11 C -0.136 4.136 12 N -0.513 5.513 13 Si 0.724 3.276 14 H -0.194 1.194 15 H -0.205 1.205 16 H -0.203 1.203 17 C 0.025 3.975 18 C -0.182 4.182 19 C -0.215 4.215 20 C -0.214 4.214 21 C -0.120 4.120 22 C -0.082 4.082 23 C -0.120 4.120 24 N 0.550 4.450 25 O -0.383 6.383 26 O -0.382 6.382 27 H 0.102 0.898 28 H 0.114 0.886 29 H 0.089 0.911 30 H 0.166 0.834 31 H 0.058 0.942 32 H 0.082 0.918 33 H 0.082 0.918 34 H 0.105 0.895 35 H 0.098 0.902 36 H 0.123 0.877 37 H 0.113 0.887 38 H 0.106 0.894 39 H 0.110 0.890 40 H 0.112 0.888 41 H 0.239 0.761 42 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges -6.435 6.137 0.556 8.909 hybrid contribution 0.663 -0.872 -0.420 1.173 sum -5.771 5.265 0.136 7.813 Atomic orbital electron populations 1.21230 0.88681 1.04101 1.04200 1.19631 0.97740 0.90180 0.96811 1.21093 0.92725 0.97264 0.98493 1.20504 0.93914 0.94839 0.98451 1.18074 0.81706 0.87074 0.79041 1.90707 1.69287 1.37210 1.46554 1.48039 1.16111 1.09817 1.56721 1.20418 0.93934 0.81498 0.95828 1.21475 1.22459 1.10792 1.04310 0.91294 1.25022 0.96620 0.96211 0.95708 1.69920 1.40363 1.17986 1.22996 0.86421 0.80871 0.79051 0.81255 1.19381 1.20466 1.20336 1.20932 0.97911 0.84478 0.94172 1.22760 1.04687 0.90888 0.99834 1.23008 0.93871 1.01656 1.02969 1.22910 0.95268 1.01217 1.02042 1.23711 1.06723 0.89036 0.92576 1.21181 0.90116 1.01489 0.95378 1.21254 0.92597 0.82746 1.15417 1.43673 1.00988 1.03023 0.97329 1.94541 1.70433 1.19855 1.53467 1.94417 0.96620 1.93847 1.53293 0.89795 0.88624 0.91106 0.83367 0.94216 0.91774 0.91846 0.89453 0.90199 0.87724 0.88689 0.89414 0.89029 0.88804 0.76106 0.82725 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.49 8.68 36.00 0.31 -1.18 16 2 C -0.04 -0.62 5.87 -104.68 -0.61 -1.24 16 3 C -0.08 -1.18 9.22 -39.19 -0.36 -1.54 16 4 C -0.07 -1.31 5.59 -104.97 -0.59 -1.90 16 5 C 0.55 10.72 7.47 -12.33 -0.09 10.62 16 6 O -0.56 -11.54 16.19 5.32 0.09 -11.45 16 7 N -0.58 -11.04 2.47 -176.17 -0.43 -11.47 16 8 C 0.20 4.24 4.67 -5.19 -0.02 4.22 16 9 C -0.55 -12.61 7.53 -34.44 -0.26 -12.87 16 10 H 0.07 1.62 7.81 -52.49 -0.41 1.21 16 11 C 0.07 1.65 5.33 -17.82 -0.10 1.55 16 12 N -0.88 -21.41 13.29 55.43 0.74 -20.67 16 13 Si 0.90 18.66 29.54 -169.99 -5.02 13.64 16 14 H -0.27 -5.63 7.11 56.52 0.40 -5.23 16 15 H -0.28 -5.85 7.11 56.52 0.40 -5.44 16 16 H -0.28 -5.79 7.11 56.52 0.40 -5.39 16 17 C 0.15 2.50 5.78 -4.04 -0.02 2.48 16 18 C -0.16 -2.41 6.01 -90.62 -0.54 -2.96 16 19 C -0.18 -2.33 10.18 -26.69 -0.27 -2.60 16 20 C -0.18 -2.15 10.25 -26.69 -0.27 -2.43 16 21 C -0.10 -1.89 7.50 -39.19 -0.29 -2.18 16 22 C -0.06 -1.07 9.54 -39.64 -0.38 -1.45 16 23 C -0.04 -0.60 6.84 -79.86 -0.55 -1.15 16 24 N 0.03 0.59 4.45 34.01 0.15 0.74 16 25 O -0.17 -3.02 18.45 -29.46 -0.54 -3.56 16 26 O -0.17 -2.73 15.32 -29.46 -0.45 -3.18 16 27 H 0.08 0.93 8.14 -51.93 -0.42 0.51 16 28 H 0.10 1.18 5.82 -51.93 -0.30 0.87 16 29 H 0.07 0.69 8.04 -51.93 -0.42 0.27 16 30 H 0.15 2.06 7.91 -52.49 -0.42 1.64 16 31 H 0.04 0.89 8.13 -51.93 -0.42 0.47 16 32 H 0.07 1.37 3.99 -52.25 -0.21 1.16 16 33 H 0.27 6.36 8.31 -40.82 -0.34 6.02 16 34 H 0.09 1.48 8.11 -51.93 -0.42 1.06 16 35 H 0.08 1.36 6.95 -51.93 -0.36 1.00 16 36 H 0.10 1.65 8.14 -51.93 -0.42 1.22 16 37 H 0.09 1.27 8.03 -51.93 -0.42 0.85 16 38 H 0.09 1.06 8.14 -51.93 -0.42 0.63 16 39 H 0.09 1.00 8.14 -51.93 -0.42 0.58 16 40 H 0.09 1.06 8.14 -51.92 -0.42 0.64 16 41 H 0.22 4.56 3.03 -52.48 -0.16 4.40 16 42 H 0.16 2.57 7.61 -52.48 -0.40 2.17 16 LS Contribution 355.96 15.07 5.36 5.36 Total: -1.00 -25.21 355.96 -9.35 -34.56 By element: Atomic # 1 Polarization: 13.82 SS G_CDS: -5.18 Total: 8.64 kcal Atomic # 6 Polarization: -8.55 SS G_CDS: -4.05 Total: -12.61 kcal Atomic # 7 Polarization: -31.86 SS G_CDS: 0.45 Total: -31.40 kcal Atomic # 8 Polarization: -17.28 SS G_CDS: -0.91 Total: -18.19 kcal Atomic # 14 Polarization: 18.66 SS G_CDS: -5.02 Total: 13.64 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -25.21 -9.35 -34.56 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000264099261.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.855 kcal (2) G-P(sol) polarization free energy of solvation -25.213 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.642 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.347 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.560 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.295 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds