Wall clock time and date at job start Tue Mar 31 2020 13:19:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.37979 * 119.92920 * 2 1 4 4 C 1.39552 * 119.85368 * 179.97438 * 3 2 1 5 5 C 1.47847 * 120.14559 * 179.97438 * 4 3 2 6 6 O 1.21557 * 119.99867 * 330.62505 * 5 4 3 7 7 N 1.34771 * 120.00158 * 150.62710 * 5 4 3 8 8 C 1.46501 * 119.99972 * 6.33061 * 7 5 4 9 9 C 1.50697 * 109.47440 * 98.67760 * 8 7 5 10 10 H 1.08001 * 120.00170 * 359.97438 * 9 8 7 11 11 C 1.37879 * 120.00042 * 180.02562 * 9 8 7 12 12 N 1.31516 * 120.00024 * 359.97438 * 11 9 8 13 13 Si 1.86797 * 119.99830 * 179.97438 * 11 9 8 14 14 H 1.48494 * 109.47365 * 359.97438 * 13 11 9 15 15 H 1.48501 * 109.47471 * 119.99775 * 13 11 9 16 16 H 1.48503 * 109.47046 * 239.99518 * 13 11 9 17 17 C 1.46508 * 120.00046 * 186.32465 * 7 5 4 18 18 C 1.52994 * 109.46734 * 94.63894 * 17 7 5 19 19 C 1.53004 * 117.49804 * 244.37240 * 18 17 7 20 20 C 1.53002 * 117.49971 * 175.71221 * 18 17 7 21 21 C 1.39601 * 119.71282 * 0.02562 * 4 3 2 22 22 C 1.37932 * 119.84875 * 0.24638 * 21 4 3 23 23 C 1.38338 * 119.92632 * 180.02562 * 2 1 3 24 24 N 1.48013 * 119.85493 * 359.97438 * 23 2 1 25 25 O 1.21802 * 120.00217 * 186.09243 * 24 23 2 26 26 O 1.21797 * 119.99676 * 6.09074 * 24 23 2 27 27 H 1.08996 * 109.47236 * 96.69129 * 1 2 3 28 28 H 1.09004 * 109.47121 * 216.68776 * 1 2 3 29 29 H 1.09003 * 109.47088 * 336.68869 * 1 2 3 30 30 H 1.08000 * 120.07288 * 359.97438 * 3 2 1 31 31 H 1.09006 * 109.46942 * 218.67476 * 8 7 5 32 32 H 1.08998 * 109.47217 * 338.67377 * 8 7 5 33 33 H 0.96992 * 119.99738 * 180.02562 * 12 11 9 34 34 H 1.08996 * 109.47264 * 214.63860 * 17 7 5 35 35 H 1.09001 * 109.47137 * 334.64027 * 17 7 5 36 36 H 1.09003 * 115.55536 * 30.04381 * 18 17 7 37 37 H 1.08997 * 117.49659 * 0.02562 * 19 18 17 38 38 H 1.09001 * 117.49532 * 145.02468 * 19 18 17 39 39 H 1.09001 * 117.50397 * 214.97920 * 20 18 17 40 40 H 1.09009 * 117.49585 * 0.02562 * 20 18 17 41 41 H 1.08004 * 120.07397 * 179.97438 * 21 4 3 42 42 H 1.08003 * 119.92295 * 179.74532 * 22 21 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1954 1.1958 0.0000 4 6 3.5909 1.1939 0.0005 5 6 4.3351 2.4715 0.0000 6 8 3.8485 3.4580 -0.5173 7 7 5.5529 2.5422 0.5729 8 6 6.1991 1.3261 1.0724 9 6 7.1912 0.8291 0.0527 10 1 7.3264 1.3653 -0.8750 11 6 7.9253 -0.3107 0.3035 12 7 7.7603 -0.9639 1.4330 13 14 9.1545 -0.9270 -0.9609 14 1 9.1508 -0.0211 -2.1374 15 1 10.5122 -0.9530 -0.3598 16 1 8.7773 -2.2975 -1.3908 17 6 6.2306 3.8353 0.6959 18 6 5.9414 4.4333 2.0742 19 6 5.1458 5.7393 2.1248 20 6 6.6443 5.7429 2.4376 21 6 4.2812 -0.0194 0.0005 22 6 3.5809 -1.2077 -0.0051 23 6 2.1971 -1.1989 -0.0005 24 7 1.4521 -2.4779 -0.0005 25 8 2.0520 -3.5321 0.1109 26 8 0.2393 -2.4762 -0.1120 27 1 -0.3633 -0.1197 -1.0206 28 1 -0.3633 -0.8241 0.6140 29 1 -0.3633 0.9438 0.4067 30 1 1.6554 2.1311 -0.0004 31 1 6.7173 1.5471 2.0057 32 1 5.4444 0.5597 1.2486 33 1 8.2770 -1.7655 1.6096 34 1 7.3051 3.6950 0.5789 35 1 5.8661 4.5116 -0.0773 36 1 5.7761 3.7120 2.8745 37 1 4.8281 6.1721 1.1762 38 1 4.4574 5.8772 2.9586 39 1 6.9410 5.8832 3.4770 40 1 7.3124 6.1785 1.6946 41 1 5.3612 -0.0277 0.0005 42 1 4.1138 -2.1471 -0.0093 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000264099261.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:19:28 Heat of formation + Delta-G solvation = 26.011045 kcal Electronic energy + Delta-G solvation = -26913.728915 eV Core-core repulsion = 23056.678113 eV Total energy + Delta-G solvation = -3857.050802 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -43.40095 -41.72112 -39.82335 -38.24910 -37.82180 -36.91533 -34.57691 -34.12918 -33.06501 -30.01326 -29.00371 -28.37481 -26.71130 -25.17778 -24.00381 -23.38171 -23.18907 -21.83658 -20.59933 -20.20303 -19.82278 -18.75255 -18.67263 -18.03684 -17.73303 -16.69178 -16.48306 -16.22290 -15.99956 -15.77681 -15.28032 -15.02757 -14.82014 -14.64852 -14.35426 -14.03167 -13.77669 -13.55835 -13.36046 -13.13963 -12.93849 -12.73409 -12.58832 -12.53042 -12.35201 -12.29435 -12.23502 -11.85258 -11.79095 -11.67459 -11.37415 -11.01453 -10.85202 -10.75592 -10.58061 -10.00283 -9.60505 -8.30261 -6.46570 -1.39808 -0.07948 0.06156 0.29937 1.38445 1.44282 1.51014 1.54819 2.01038 2.30880 2.41228 2.90790 2.99040 3.29366 3.35632 3.37623 3.76601 3.82881 3.85568 4.00174 4.10681 4.23222 4.33054 4.39567 4.50813 4.64989 4.68157 4.76035 4.78026 4.79855 4.84599 4.96058 5.00699 5.03034 5.06086 5.14668 5.24474 5.26640 5.28385 5.50936 5.57499 5.67927 5.90087 6.39648 6.53783 6.68062 7.05098 7.26728 8.73581 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.009291 B = 0.005404 C = 0.003665 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3013.070887 B = 5180.321768 C = 7638.736644 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.026 4.026 3 C -0.067 4.067 4 C -0.085 4.085 5 C 0.551 3.449 6 O -0.572 6.572 7 N -0.580 5.580 8 C 0.216 3.784 9 C -0.553 4.553 10 H 0.058 0.942 11 C 0.036 3.964 12 N -0.903 5.903 13 Si 0.948 3.052 14 H -0.271 1.271 15 H -0.278 1.278 16 H -0.277 1.277 17 C 0.148 3.852 18 C -0.185 4.185 19 C -0.171 4.171 20 C -0.156 4.156 21 C -0.115 4.115 22 C -0.066 4.066 23 C -0.044 4.044 24 N 0.034 4.966 25 O -0.212 6.212 26 O -0.132 6.132 27 H 0.099 0.901 28 H 0.094 0.906 29 H 0.099 0.901 30 H 0.171 0.829 31 H 0.021 0.979 32 H 0.065 0.935 33 H 0.273 0.727 34 H 0.080 0.920 35 H 0.077 0.923 36 H 0.092 0.908 37 H 0.092 0.908 38 H 0.100 0.900 39 H 0.108 0.892 40 H 0.104 0.896 41 H 0.200 0.800 42 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.224 6.333 0.550 10.395 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.028 4.028 3 C -0.086 4.086 4 C -0.088 4.088 5 C 0.339 3.661 6 O -0.454 6.454 7 N -0.308 5.308 8 C 0.096 3.904 9 C -0.591 4.591 10 H 0.077 0.923 11 C -0.167 4.167 12 N -0.540 5.540 13 Si 0.774 3.226 14 H -0.195 1.195 15 H -0.203 1.203 16 H -0.202 1.202 17 C 0.025 3.975 18 C -0.205 4.205 19 C -0.208 4.208 20 C -0.193 4.193 21 C -0.133 4.133 22 C -0.085 4.085 23 C -0.127 4.127 24 N 0.549 4.451 25 O -0.414 6.414 26 O -0.355 6.355 27 H 0.118 0.882 28 H 0.112 0.888 29 H 0.118 0.882 30 H 0.188 0.812 31 H 0.039 0.961 32 H 0.082 0.918 33 H 0.082 0.918 34 H 0.099 0.901 35 H 0.096 0.904 36 H 0.110 0.890 37 H 0.110 0.890 38 H 0.118 0.882 39 H 0.126 0.874 40 H 0.122 0.878 41 H 0.216 0.784 42 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges -7.930 7.224 0.424 10.735 hybrid contribution 0.999 -1.148 -0.394 1.572 sum -6.931 6.076 0.030 9.217 Atomic orbital electron populations 1.21370 0.85898 1.05714 1.05231 1.20006 0.99509 0.88974 0.94265 1.21307 0.91587 0.98411 0.97304 1.20501 0.95063 0.93745 0.99486 1.18296 0.81664 0.87492 0.78619 1.90684 1.69590 1.37871 1.47292 1.48056 1.16267 1.10016 1.56483 1.20134 0.93522 0.82184 0.94539 1.21548 1.22738 1.10659 1.04112 0.92331 1.25553 0.97878 0.96375 0.96909 1.69986 1.41307 1.18438 1.24255 0.85639 0.79152 0.78408 0.79428 1.19495 1.20332 1.20247 1.21004 0.97307 0.83586 0.95588 1.22596 1.07939 0.91776 0.98156 1.23049 0.94823 0.99604 1.03325 1.23029 0.94904 0.98112 1.03303 1.23315 1.05690 0.89864 0.94462 1.21075 0.90821 1.00929 0.95694 1.21344 0.92392 0.83189 1.15794 1.43702 1.01053 1.03031 0.97322 1.94567 1.70662 1.20150 1.56025 1.94388 0.96404 1.93787 1.50935 0.88236 0.88786 0.88242 0.81156 0.96058 0.91825 0.91808 0.90135 0.90425 0.89010 0.88978 0.88190 0.87368 0.87754 0.78381 0.83084 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.47 8.68 71.23 0.62 -1.85 16 2 C -0.03 -0.70 5.87 -19.90 -0.12 -0.82 16 3 C -0.07 -1.92 9.22 22.53 0.21 -1.71 16 4 C -0.08 -2.99 5.59 -20.09 -0.11 -3.10 16 5 C 0.55 21.36 7.47 86.79 0.65 22.00 16 6 O -0.57 -23.38 16.19 -3.89 -0.06 -23.44 16 7 N -0.58 -22.62 2.47 -829.56 -2.05 -24.67 16 8 C 0.22 9.39 4.67 85.63 0.40 9.79 16 9 C -0.55 -25.94 7.53 25.60 0.19 -25.74 16 10 H 0.06 2.82 7.81 -2.91 -0.02 2.80 16 11 C 0.04 1.73 5.33 84.65 0.45 2.18 16 12 N -0.90 -45.13 13.29 21.45 0.28 -44.85 16 13 Si 0.95 38.77 29.54 68.60 2.03 40.80 16 14 H -0.27 -11.01 7.11 99.48 0.71 -10.30 16 15 H -0.28 -11.25 7.11 99.48 0.71 -10.54 16 16 H -0.28 -11.22 7.11 99.48 0.71 -10.52 16 17 C 0.15 5.05 5.78 86.38 0.50 5.55 16 18 C -0.19 -5.44 6.01 -10.79 -0.06 -5.51 16 19 C -0.17 -4.20 10.18 30.62 0.31 -3.89 16 20 C -0.16 -3.52 10.25 30.62 0.31 -3.20 16 21 C -0.12 -4.32 7.50 22.53 0.17 -4.15 16 22 C -0.07 -2.30 9.54 22.23 0.21 -2.09 16 23 C -0.04 -1.38 6.84 36.43 0.25 -1.13 16 24 N 0.03 1.12 4.45 -46.33 -0.21 0.91 16 25 O -0.21 -7.57 18.45 18.88 0.35 -7.23 16 26 O -0.13 -3.90 15.32 18.89 0.29 -3.61 16 27 H 0.10 1.75 8.14 -2.39 -0.02 1.73 16 28 H 0.09 1.94 5.82 -2.38 -0.01 1.93 16 29 H 0.10 1.44 8.04 -2.39 -0.02 1.42 16 30 H 0.17 4.16 7.91 -2.91 -0.02 4.14 16 31 H 0.02 1.00 8.13 -2.38 -0.02 0.98 16 32 H 0.06 2.83 3.99 -2.69 -0.01 2.82 16 33 H 0.27 13.01 8.31 -92.71 -0.77 12.24 16 34 H 0.08 2.80 8.11 -2.39 -0.02 2.78 16 35 H 0.08 2.66 6.95 -2.39 -0.02 2.65 16 36 H 0.09 2.93 8.14 -2.39 -0.02 2.91 16 37 H 0.09 2.33 8.03 -2.39 -0.02 2.31 16 38 H 0.10 2.20 8.14 -2.39 -0.02 2.18 16 39 H 0.11 2.10 8.14 -2.39 -0.02 2.08 16 40 H 0.10 2.14 8.14 -2.38 -0.02 2.12 16 41 H 0.20 8.50 3.03 -2.91 -0.01 8.49 16 42 H 0.15 5.25 7.61 -2.91 -0.02 5.23 16 Total: -1.00 -53.99 355.96 5.67 -48.32 By element: Atomic # 1 Polarization: 26.38 SS G_CDS: 1.06 Total: 27.44 kcal Atomic # 6 Polarization: -17.65 SS G_CDS: 3.98 Total: -13.67 kcal Atomic # 7 Polarization: -66.64 SS G_CDS: -1.97 Total: -68.61 kcal Atomic # 8 Polarization: -34.85 SS G_CDS: 0.57 Total: -34.28 kcal Atomic # 14 Polarization: 38.77 SS G_CDS: 2.03 Total: 40.80 kcal Total: -53.99 5.67 -48.32 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000264099261.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.333 kcal (2) G-P(sol) polarization free energy of solvation -53.992 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.340 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.671 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.322 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.011 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds