Wall clock time and date at job start Tue Mar 31 2020 13:52:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53002 * 109.47057 * 2 1 4 4 C 1.53000 * 110.53667 * 64.29842 * 3 2 1 5 5 N 1.47308 * 110.73076 * 301.37760 * 3 2 1 6 6 C 1.34522 * 106.62124 * 241.41154 * 5 3 2 7 7 O 1.21544 * 123.77377 * 179.97438 * 6 5 3 8 8 N 1.33789 * 112.45990 * 359.97438 * 6 5 3 9 9 C 1.46498 * 124.18343 * 179.97438 * 8 6 5 10 10 C 1.50699 * 109.47397 * 270.04656 * 9 8 6 11 11 C 1.38302 * 119.92853 * 269.72350 * 10 9 8 12 12 C 1.38101 * 120.06942 * 179.72309 * 11 10 9 13 13 C 1.38879 * 119.92829 * 0.54827 * 12 11 10 14 14 O 1.35749 * 120.06710 * 179.74715 * 13 12 11 15 15 C 1.34824 * 116.99949 * 174.44170 * 14 13 12 16 16 H 1.08003 * 120.00175 * 5.05449 * 15 14 13 17 17 C 1.38651 * 120.00215 * 185.05538 * 15 14 13 18 18 N 1.31557 * 120.00432 * 179.97438 * 17 15 14 19 19 Si 1.86802 * 120.00030 * 0.02562 * 17 15 14 20 20 H 1.48506 * 109.46997 * 89.99687 * 19 17 15 21 21 H 1.48497 * 109.47549 * 209.99988 * 19 17 15 22 22 H 1.48498 * 109.46994 * 330.00038 * 19 17 15 23 23 C 1.38870 * 119.86106 * 359.72565 * 13 12 11 24 24 C 1.38097 * 119.93605 * 0.02562 * 23 13 12 25 25 C 1.34777 * 111.64261 * 0.02562 * 8 6 5 26 26 O 1.21233 * 127.15417 * 179.97438 * 25 8 6 27 27 H 1.09001 * 109.47163 * 299.99880 * 1 2 3 28 28 H 1.09006 * 109.47054 * 60.00107 * 1 2 3 29 29 H 1.09001 * 109.47005 * 179.97438 * 1 2 3 30 30 H 1.09001 * 109.47163 * 240.00120 * 2 1 3 31 31 H 1.09001 * 109.47392 * 119.99586 * 2 1 3 32 32 H 1.08994 * 109.47550 * 182.13050 * 4 3 2 33 33 H 1.08999 * 109.46962 * 302.13010 * 4 3 2 34 34 H 1.08996 * 109.46732 * 62.12489 * 4 3 2 35 35 H 0.97005 * 126.69440 * 61.38930 * 5 3 2 36 36 H 1.09000 * 109.46828 * 30.03988 * 9 8 6 37 37 H 1.08999 * 109.47544 * 150.03873 * 9 8 6 38 38 H 1.08004 * 119.96711 * 0.02562 * 11 10 9 39 39 H 1.08007 * 120.03166 * 180.27527 * 12 11 10 40 40 H 0.97005 * 120.00545 * 180.02562 * 18 17 15 41 41 H 1.08001 * 120.03320 * 179.97438 * 23 13 12 42 42 H 1.08000 * 119.97048 * 179.97438 * 24 23 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 1.6330 2.1557 1.2910 5 7 1.5375 2.1732 -1.1762 6 6 2.6167 2.5480 -1.8864 7 8 2.5572 3.1749 -2.9260 8 7 3.7631 2.1536 -1.3205 9 6 5.0912 2.4236 -1.8768 10 6 5.4877 1.2993 -2.7986 11 6 6.1778 0.2092 -2.3003 12 6 6.5377 -0.8254 -3.1413 13 6 6.2158 -0.7651 -4.4909 14 8 6.5727 -1.7781 -5.3211 15 6 6.1304 -1.7118 -6.5930 16 1 5.5906 -0.8401 -6.9323 17 6 6.3686 -2.7627 -7.4656 18 7 5.9366 -2.6982 -8.7065 19 14 7.3017 -4.2708 -6.8787 20 1 6.3425 -5.2659 -6.3353 21 1 8.0430 -4.8688 -8.0180 22 1 8.2612 -3.8767 -5.8161 23 6 5.5279 0.3334 -4.9893 24 6 5.1663 1.3625 -4.1423 25 6 3.5452 1.4763 -0.1759 26 8 4.3795 0.9943 0.5599 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 1.8933 -0.5138 -0.8900 31 1 1.8934 -0.5138 0.8900 32 1 1.9718 3.1911 1.2565 33 1 0.5481 2.1316 1.3929 34 1 2.0893 1.6523 2.1434 35 1 0.6092 2.3496 -1.3961 36 1 5.0679 3.3597 -2.4348 37 1 5.8157 2.5016 -1.0663 38 1 6.4313 0.1648 -1.2514 39 1 7.0727 -1.6784 -2.7506 40 1 6.1029 -3.4336 -9.3169 41 1 5.2765 0.3834 -6.0385 42 1 4.6316 2.2172 -4.5293 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000264744888.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:52:21 Heat of formation + Delta-G solvation = -46.929704 kcal Electronic energy + Delta-G solvation = -26778.398311 eV Core-core repulsion = 22918.184561 eV Total energy + Delta-G solvation = -3860.213750 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -42.62828 -39.24231 -38.63975 -37.41419 -36.67517 -35.31248 -32.89188 -32.39320 -30.40325 -30.21931 -29.84439 -26.76677 -25.61261 -24.72577 -23.51214 -22.09270 -21.52384 -20.72490 -20.12960 -18.03844 -17.89886 -17.37490 -16.85363 -16.41164 -15.75702 -15.63608 -15.18929 -14.89120 -14.87363 -14.26165 -14.19239 -14.06662 -13.83863 -13.64110 -13.27778 -12.99928 -12.77842 -12.64230 -12.62278 -12.38012 -12.26191 -11.85469 -11.73779 -11.50398 -11.33426 -11.27720 -10.92985 -10.70574 -10.69080 -10.19912 -10.13889 -9.73761 -9.57452 -9.41819 -8.91378 -8.29393 -7.43063 -6.45849 -4.12560 1.55646 1.81558 2.11711 2.46774 2.98519 3.02390 3.19663 3.23233 3.37806 3.76034 4.16230 4.20170 4.34895 4.45285 4.79957 4.83486 4.90748 4.93563 5.06144 5.06808 5.13395 5.24115 5.33054 5.43560 5.48261 5.51580 5.63871 5.67095 5.70446 5.76039 5.80943 5.86251 6.11895 6.29220 6.52712 6.64745 6.76162 6.98126 7.01128 7.20592 7.27467 7.32504 7.56581 7.76402 7.99017 8.09509 8.88781 9.49981 10.61408 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.018089 B = 0.003269 C = 0.003210 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1547.563399 B = 8562.605394 C = 8721.011440 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.119 4.119 3 C 0.120 3.880 4 C -0.147 4.147 5 N -0.723 5.723 6 C 0.703 3.297 7 O -0.539 6.539 8 N -0.568 5.568 9 C 0.175 3.825 10 C -0.215 4.215 11 C -0.053 4.053 12 C -0.197 4.197 13 C 0.169 3.831 14 O -0.213 6.213 15 C -0.391 4.391 16 H 0.108 0.892 17 C 0.064 3.936 18 N -0.876 5.876 19 Si 0.906 3.094 20 H -0.273 1.273 21 H -0.281 1.281 22 H -0.259 1.259 23 C -0.226 4.226 24 C -0.044 4.044 25 C 0.531 3.469 26 O -0.465 6.465 27 H 0.061 0.939 28 H 0.057 0.943 29 H 0.065 0.935 30 H 0.076 0.924 31 H 0.088 0.912 32 H 0.066 0.934 33 H 0.079 0.921 34 H 0.083 0.917 35 H 0.436 0.564 36 H 0.096 0.904 37 H 0.094 0.906 38 H 0.116 0.884 39 H 0.118 0.882 40 H 0.280 0.720 41 H 0.134 0.866 42 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.881 8.808 20.047 24.023 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.157 4.157 3 C 0.029 3.971 4 C -0.205 4.205 5 N -0.388 5.388 6 C 0.404 3.596 7 O -0.412 6.412 8 N -0.313 5.313 9 C 0.055 3.945 10 C -0.217 4.217 11 C -0.071 4.071 12 C -0.217 4.217 13 C 0.116 3.884 14 O -0.118 6.118 15 C -0.466 4.466 16 H 0.125 0.875 17 C -0.139 4.139 18 N -0.514 5.514 19 Si 0.731 3.269 20 H -0.198 1.198 21 H -0.207 1.207 22 H -0.183 1.183 23 C -0.245 4.245 24 C -0.063 4.063 25 C 0.317 3.683 26 O -0.335 6.335 27 H 0.080 0.920 28 H 0.076 0.924 29 H 0.084 0.916 30 H 0.095 0.905 31 H 0.107 0.893 32 H 0.085 0.915 33 H 0.098 0.902 34 H 0.101 0.899 35 H 0.280 0.720 36 H 0.115 0.885 37 H 0.113 0.887 38 H 0.134 0.866 39 H 0.136 0.864 40 H 0.090 0.910 41 H 0.152 0.848 42 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -9.193 8.592 19.649 23.333 hybrid contribution -0.142 -0.611 -0.274 0.684 sum -9.335 7.982 19.375 22.940 Atomic orbital electron populations 1.21781 0.94183 1.02820 1.02067 1.21728 0.97366 0.92165 1.04490 1.21491 0.91516 0.95424 0.88686 1.22015 1.03213 1.00733 0.94507 1.45679 1.08433 1.59624 1.25101 1.15923 0.80959 0.79523 0.83226 1.91009 1.85332 1.43095 1.21778 1.46705 1.08938 1.51876 1.23797 1.20410 0.79436 0.97831 0.96775 1.19383 1.09350 0.98588 0.94395 1.20583 0.95992 0.92260 0.98311 1.20190 1.09195 1.01216 0.91066 1.19188 0.91627 0.87808 0.89806 1.83569 1.65276 1.40980 1.21929 1.20801 1.36643 1.06657 0.82528 0.87509 1.24482 0.96711 0.98405 0.94331 1.69647 1.44145 1.33422 1.04140 0.86180 0.80432 0.81516 0.78784 1.19837 1.20684 1.18301 1.21273 1.06418 0.95474 1.01333 1.20778 0.95792 0.97349 0.92364 1.20731 0.90697 0.76582 0.80320 1.90768 1.51719 1.43820 1.47167 0.91996 0.92415 0.91606 0.90479 0.89298 0.91482 0.90190 0.89858 0.71974 0.88520 0.88746 0.86562 0.86387 0.90951 0.84815 0.86634 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.87 9.50 37.16 0.35 -0.52 16 2 C -0.12 -0.96 5.27 -26.73 -0.14 -1.10 16 3 C 0.12 1.05 1.00 -132.09 -0.13 0.91 16 4 C -0.15 -0.88 8.76 37.16 0.33 -0.55 16 5 N -0.72 -6.80 5.47 -52.94 -0.29 -7.09 16 6 C 0.70 9.50 8.62 -88.03 -0.76 8.74 16 7 O -0.54 -9.06 17.48 5.33 0.09 -8.97 16 8 N -0.57 -7.57 2.59 -122.02 -0.32 -7.89 16 9 C 0.17 2.41 5.82 -5.20 -0.03 2.38 16 10 C -0.22 -3.67 5.47 -104.58 -0.57 -4.24 16 11 C -0.05 -0.92 9.69 -39.61 -0.38 -1.31 16 12 C -0.20 -3.98 9.99 -39.39 -0.39 -4.37 16 13 C 0.17 3.94 6.65 -39.11 -0.26 3.68 16 14 O -0.21 -5.66 8.59 0.07 0.00 -5.66 16 15 C -0.39 -11.07 9.95 30.88 0.31 -10.76 16 16 H 0.11 3.10 5.44 -52.48 -0.29 2.82 16 17 C 0.06 1.81 5.49 -17.52 -0.10 1.71 16 18 N -0.88 -25.33 13.96 55.48 0.77 -24.56 16 19 Si 0.91 21.65 28.62 -169.99 -4.86 16.79 16 20 H -0.27 -6.41 7.11 56.52 0.40 -6.00 16 21 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 22 H -0.26 -6.21 7.11 56.52 0.40 -5.81 16 23 C -0.23 -5.00 9.17 -39.40 -0.36 -5.36 16 24 C -0.04 -0.84 9.69 -39.61 -0.38 -1.22 16 25 C 0.53 6.53 6.98 -10.55 -0.07 6.46 16 26 O -0.47 -6.62 17.76 5.60 0.10 -6.52 16 27 H 0.06 0.26 6.59 -51.93 -0.34 -0.08 16 28 H 0.06 0.33 7.12 -51.93 -0.37 -0.04 16 29 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 30 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 31 H 0.09 0.66 8.14 -51.93 -0.42 0.24 16 32 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 33 H 0.08 0.32 6.55 -51.93 -0.34 -0.02 16 34 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 35 H 0.44 3.07 8.19 -40.82 -0.33 2.74 16 36 H 0.10 1.26 7.80 -51.93 -0.41 0.86 16 37 H 0.09 1.14 7.94 -51.93 -0.41 0.73 16 38 H 0.12 1.81 8.06 -52.48 -0.42 1.39 16 39 H 0.12 2.22 8.06 -52.48 -0.42 1.80 16 40 H 0.28 7.47 8.31 -40.82 -0.34 7.13 16 41 H 0.13 3.12 5.64 -52.49 -0.30 2.83 16 42 H 0.12 2.09 8.06 -52.49 -0.42 1.67 16 LS Contribution 356.30 15.07 5.37 5.37 Total: -1.00 -32.51 356.30 -7.04 -39.54 By element: Atomic # 1 Polarization: 9.84 SS G_CDS: -5.30 Total: 4.53 kcal Atomic # 6 Polarization: -2.95 SS G_CDS: -2.60 Total: -5.55 kcal Atomic # 7 Polarization: -39.71 SS G_CDS: 0.17 Total: -39.54 kcal Atomic # 8 Polarization: -21.34 SS G_CDS: 0.19 Total: -21.14 kcal Atomic # 14 Polarization: 21.65 SS G_CDS: -4.86 Total: 16.79 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -32.51 -7.04 -39.54 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000264744888.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.386 kcal (2) G-P(sol) polarization free energy of solvation -32.508 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.894 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.036 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.544 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.930 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds