Wall clock time and date at job start Tue Mar 31 2020 13:52:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52998 * 109.47187 * 2 1 4 4 C 1.53002 * 110.53484 * 298.62477 * 3 2 1 5 5 N 1.47312 * 110.60036 * 61.45318 * 3 2 1 6 6 C 1.34520 * 106.62377 * 118.52919 * 5 3 2 7 7 O 1.21538 * 123.77377 * 180.02562 * 6 5 3 8 8 N 1.33797 * 112.45818 * 359.97438 * 6 5 3 9 9 C 1.46494 * 124.17916 * 179.97438 * 8 6 5 10 10 C 1.50701 * 109.47055 * 90.03234 * 9 8 6 11 11 C 1.38295 * 119.93296 * 89.99420 * 10 9 8 12 12 C 1.38108 * 120.07068 * 180.25416 * 11 10 9 13 13 C 1.38882 * 119.92594 * 359.47405 * 12 11 10 14 14 O 1.35746 * 120.06738 * 180.25103 * 13 12 11 15 15 C 1.34834 * 117.00303 * 174.74183 * 14 13 12 16 16 H 1.08003 * 119.99155 * 5.05889 * 15 14 13 17 17 C 1.38652 * 120.00189 * 185.05783 * 15 14 13 18 18 N 1.31560 * 119.99769 * 179.97438 * 17 15 14 19 19 Si 1.86794 * 120.00099 * 0.02562 * 17 15 14 20 20 H 1.48505 * 109.47365 * 90.00106 * 19 17 15 21 21 H 1.48504 * 109.47275 * 210.00122 * 19 17 15 22 22 H 1.48500 * 109.47373 * 330.00058 * 19 17 15 23 23 C 1.38876 * 119.86349 * 0.53021 * 13 12 11 24 24 C 1.38100 * 119.93177 * 359.72088 * 23 13 12 25 25 C 1.34769 * 111.63878 * 0.23335 * 8 6 5 26 26 O 1.21236 * 127.15507 * 179.73185 * 25 8 6 27 27 H 1.09000 * 109.47511 * 299.99995 * 1 2 3 28 28 H 1.08997 * 109.47205 * 60.00155 * 1 2 3 29 29 H 1.08997 * 109.47209 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.47511 * 240.00005 * 2 1 3 31 31 H 1.09004 * 109.46966 * 119.99553 * 2 1 3 32 32 H 1.09001 * 109.47293 * 182.12710 * 4 3 2 33 33 H 1.09000 * 109.46793 * 302.12349 * 4 3 2 34 34 H 1.08998 * 109.47036 * 62.12538 * 4 3 2 35 35 H 0.97011 * 126.68798 * 298.49488 * 5 3 2 36 36 H 1.08995 * 109.47465 * 330.02873 * 9 8 6 37 37 H 1.09003 * 109.47038 * 210.02729 * 9 8 6 38 38 H 1.08000 * 119.96838 * 359.97438 * 11 10 9 39 39 H 1.07994 * 120.03585 * 179.72629 * 12 11 10 40 40 H 0.96997 * 119.99989 * 179.97438 * 18 17 15 41 41 H 1.07996 * 120.03747 * 179.74433 * 23 13 12 42 42 H 1.07997 * 119.96862 * 180.02562 * 24 23 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 1.5717 2.1773 -1.2577 5 7 1.5915 2.1508 1.2113 6 6 2.7019 2.5130 1.8786 7 8 2.6896 3.1203 2.9313 8 7 3.8214 2.1291 1.2545 9 6 5.1733 2.3903 1.7546 10 6 5.6118 1.2496 2.6365 11 6 6.2736 0.1671 2.0864 12 6 6.6720 -0.8823 2.8911 13 6 6.4172 -0.8444 4.2558 14 8 6.8121 -1.8719 5.0502 15 6 6.6317 -1.7234 6.3781 16 1 6.1167 -0.8538 6.7591 17 6 7.1072 -2.6869 7.2544 18 7 6.9316 -2.5416 8.5501 19 14 7.9985 -4.1904 6.5954 20 1 9.4535 -3.9057 6.5105 21 1 7.7714 -5.3399 7.5078 22 1 7.4791 -4.5210 5.2441 23 6 5.7523 0.2441 4.8052 24 6 5.3518 1.2878 3.9944 25 6 3.5516 1.4773 0.1062 26 8 4.3517 1.0142 -0.6782 27 1 -0.3634 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0276 -0.0005 30 1 1.8934 -0.5138 -0.8900 31 1 1.8933 -0.5138 0.8901 32 1 1.9753 3.1898 -1.2584 33 1 1.9236 1.6452 -2.1415 34 1 0.4826 2.2203 -1.2691 35 1 0.6741 2.3230 1.4758 36 1 5.1754 3.3160 2.3301 37 1 5.8601 2.4839 0.9134 38 1 6.4750 0.1400 1.0257 39 1 7.1848 -1.7294 2.4602 40 1 7.2639 -3.2158 9.1632 41 1 5.5490 0.2745 5.8654 42 1 4.8351 2.1348 4.4210 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000264744890.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:52:25 Heat of formation + Delta-G solvation = -68.447617 kcal Electronic energy + Delta-G solvation = -26748.665715 eV Core-core repulsion = 22887.518878 eV Total energy + Delta-G solvation = -3861.146837 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -43.60108 -40.98143 -39.69969 -38.82456 -37.85210 -36.45625 -34.54585 -33.68902 -31.96069 -31.70131 -30.38697 -28.21980 -26.93298 -26.02518 -24.44982 -23.71863 -22.81376 -21.65867 -21.32323 -19.87702 -19.21415 -18.95977 -17.93313 -17.41888 -16.75922 -16.66787 -16.63815 -16.25690 -15.94280 -15.86177 -15.68483 -15.35858 -15.22958 -14.89705 -14.47619 -14.37359 -14.16156 -13.97804 -13.56620 -13.21700 -13.15976 -13.11910 -12.95137 -12.86470 -12.59674 -12.48000 -12.33904 -12.00012 -11.88675 -11.84322 -11.35903 -11.11380 -10.94506 -10.89568 -10.45443 -9.92012 -9.17747 -8.54418 -6.28392 0.34269 0.46671 0.58297 1.29455 1.29739 1.37004 1.50195 1.95873 2.15359 2.25055 2.69776 2.90045 2.96846 3.08411 3.48246 3.70471 3.82987 3.85466 4.04262 4.13737 4.29748 4.35115 4.36972 4.48283 4.51541 4.61593 4.63472 4.70103 4.82767 4.84428 4.87302 5.04106 5.09735 5.13896 5.21006 5.27117 5.41147 5.47042 5.61494 5.70995 5.81370 5.83185 6.04777 6.12291 6.36731 6.78871 7.10684 7.49827 8.57082 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.019123 B = 0.003190 C = 0.003142 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1463.831866 B = 8774.710335 C = 8908.766471 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.118 4.118 3 C 0.126 3.874 4 C -0.142 4.142 5 N -0.703 5.703 6 C 0.697 3.303 7 O -0.578 6.578 8 N -0.573 5.573 9 C 0.173 3.827 10 C -0.188 4.188 11 C -0.044 4.044 12 C -0.192 4.192 13 C 0.134 3.866 14 O -0.238 6.238 15 C -0.404 4.404 16 H 0.079 0.921 17 C 0.012 3.988 18 N -0.921 5.921 19 Si 0.973 3.027 20 H -0.264 1.264 21 H -0.265 1.265 22 H -0.262 1.262 23 C -0.240 4.240 24 C -0.047 4.047 25 C 0.524 3.476 26 O -0.484 6.484 27 H 0.058 0.942 28 H 0.084 0.916 29 H 0.066 0.934 30 H 0.096 0.904 31 H 0.050 0.950 32 H 0.065 0.935 33 H 0.092 0.908 34 H 0.106 0.894 35 H 0.448 0.552 36 H 0.105 0.895 37 H 0.120 0.880 38 H 0.149 0.851 39 H 0.134 0.866 40 H 0.286 0.714 41 H 0.108 0.892 42 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.936 8.962 -23.528 28.306 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.156 4.156 3 C 0.036 3.964 4 C -0.199 4.199 5 N -0.369 5.369 6 C 0.398 3.602 7 O -0.454 6.454 8 N -0.318 5.318 9 C 0.053 3.947 10 C -0.189 4.189 11 C -0.062 4.062 12 C -0.211 4.211 13 C 0.084 3.916 14 O -0.145 6.145 15 C -0.480 4.480 16 H 0.097 0.903 17 C -0.187 4.187 18 N -0.561 5.561 19 Si 0.794 3.206 20 H -0.189 1.189 21 H -0.190 1.190 22 H -0.186 1.186 23 C -0.259 4.259 24 C -0.065 4.065 25 C 0.312 3.688 26 O -0.354 6.354 27 H 0.077 0.923 28 H 0.103 0.897 29 H 0.085 0.915 30 H 0.115 0.885 31 H 0.069 0.931 32 H 0.084 0.916 33 H 0.110 0.890 34 H 0.125 0.875 35 H 0.295 0.705 36 H 0.123 0.877 37 H 0.138 0.862 38 H 0.167 0.833 39 H 0.152 0.848 40 H 0.096 0.904 41 H 0.126 0.874 42 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -12.280 8.762 -23.224 27.694 hybrid contribution 0.115 -0.443 1.226 1.308 sum -12.164 8.319 -21.999 26.479 Atomic orbital electron populations 1.21791 0.92074 1.03378 1.03281 1.21755 0.99136 0.91123 1.03620 1.21657 0.89327 0.96586 0.88794 1.22059 1.04522 1.00044 0.93307 1.45638 1.07924 1.59571 1.23751 1.16099 0.81839 0.79238 0.83058 1.90989 1.86146 1.45714 1.22574 1.46649 1.08612 1.53340 1.23239 1.20457 0.79560 0.96365 0.98319 1.19815 1.06577 0.98892 0.93649 1.20929 0.94580 0.91128 0.99600 1.20500 1.08405 1.02315 0.89911 1.19672 0.93121 0.87193 0.91628 1.83516 1.74888 1.37891 1.18238 1.20712 1.38834 1.10065 0.78402 0.90317 1.25315 0.97374 1.01638 0.94354 1.69732 1.46569 1.37399 1.02362 0.85195 0.79001 0.77524 0.78855 1.18878 1.19002 1.18637 1.21245 1.07093 0.96899 1.00662 1.20893 0.95684 0.96597 0.93355 1.21322 0.92172 0.75528 0.79754 1.90760 1.55573 1.44626 1.44449 0.92310 0.89677 0.91483 0.88521 0.93085 0.91640 0.88962 0.87504 0.70456 0.87651 0.86206 0.83326 0.84843 0.90402 0.87389 0.85789 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.14 9.47 71.98 0.68 -0.46 16 2 C -0.12 -1.54 5.29 30.59 0.16 -1.38 16 3 C 0.13 1.80 1.01 2.98 0.00 1.80 16 4 C -0.14 -1.09 8.59 71.98 0.62 -0.47 16 5 N -0.70 -11.33 5.52 -439.82 -2.43 -13.76 16 6 C 0.70 17.51 8.62 179.44 1.55 19.05 16 7 O -0.58 -18.85 17.48 -3.83 -0.07 -18.92 16 8 N -0.57 -13.89 2.59 -777.23 -2.01 -15.90 16 9 C 0.17 4.31 5.82 85.63 0.50 4.80 16 10 C -0.19 -6.06 5.47 -19.83 -0.11 -6.17 16 11 C -0.04 -1.43 9.69 22.25 0.22 -1.22 16 12 C -0.19 -7.56 9.99 22.39 0.22 -7.33 16 13 C 0.13 6.43 6.65 22.58 0.15 6.58 16 14 O -0.24 -13.17 8.59 -22.74 -0.20 -13.36 16 15 C -0.40 -24.26 9.95 67.92 0.68 -23.58 16 16 H 0.08 5.00 5.44 -2.91 -0.02 4.98 16 17 C 0.01 0.71 5.49 84.83 0.47 1.17 16 18 N -0.92 -55.55 13.96 21.61 0.30 -55.25 16 19 Si 0.97 45.65 28.62 68.60 1.96 47.61 16 20 H -0.26 -11.88 7.11 99.48 0.71 -11.17 16 21 H -0.27 -11.59 7.11 99.48 0.71 -10.89 16 22 H -0.26 -12.26 7.11 99.48 0.71 -11.55 16 23 C -0.24 -11.13 9.17 22.39 0.21 -10.93 16 24 C -0.05 -1.78 9.69 22.25 0.22 -1.57 16 25 C 0.52 11.36 6.99 87.94 0.61 11.98 16 26 O -0.48 -12.20 17.75 -2.89 -0.05 -12.26 16 27 H 0.06 0.45 7.21 -2.39 -0.02 0.43 16 28 H 0.08 0.30 6.60 -2.39 -0.02 0.28 16 29 H 0.07 0.54 8.14 -2.39 -0.02 0.52 16 30 H 0.10 1.14 8.14 -2.39 -0.02 1.12 16 31 H 0.05 0.94 8.14 -2.39 -0.02 0.92 16 32 H 0.06 0.57 8.14 -2.39 -0.02 0.55 16 33 H 0.09 0.63 8.14 -2.39 -0.02 0.61 16 34 H 0.11 0.29 6.68 -2.39 -0.02 0.28 16 35 H 0.45 4.98 8.26 -92.70 -0.77 4.21 16 36 H 0.11 2.51 7.80 -2.39 -0.02 2.49 16 37 H 0.12 2.45 7.94 -2.39 -0.02 2.43 16 38 H 0.15 4.00 8.06 -2.91 -0.02 3.98 16 39 H 0.13 4.80 8.06 -2.91 -0.02 4.77 16 40 H 0.29 15.77 8.31 -92.71 -0.77 15.00 16 41 H 0.11 5.53 5.64 -2.91 -0.02 5.51 16 42 H 0.12 4.53 8.06 -2.91 -0.02 4.51 16 Total: -1.00 -74.54 356.48 3.98 -70.56 By element: Atomic # 1 Polarization: 18.69 SS G_CDS: 0.30 Total: 18.99 kcal Atomic # 6 Polarization: -13.89 SS G_CDS: 6.17 Total: -7.72 kcal Atomic # 7 Polarization: -80.77 SS G_CDS: -4.14 Total: -84.91 kcal Atomic # 8 Polarization: -44.22 SS G_CDS: -0.31 Total: -44.54 kcal Atomic # 14 Polarization: 45.65 SS G_CDS: 1.96 Total: 47.61 kcal Total: -74.54 3.98 -70.56 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000264744890.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.113 kcal (2) G-P(sol) polarization free energy of solvation -74.540 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.428 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.980 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.560 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.448 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds