Wall clock time and date at job start Tue Mar 31 2020 12:14:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31564 * 1 3 3 Si 1.86797 * 120.00057 * 2 1 4 4 H 1.48494 * 109.47017 * 179.97438 * 3 2 1 5 5 H 1.48498 * 109.47396 * 300.00389 * 3 2 1 6 6 H 1.48508 * 109.47042 * 60.00390 * 3 2 1 7 7 C 1.38655 * 119.99851 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99903 * 179.97438 * 7 2 1 9 9 O 1.34830 * 120.00208 * 359.97438 * 7 2 1 10 10 C 1.35746 * 117.00006 * 174.98061 * 9 7 2 11 11 C 1.38949 * 120.03315 * 185.37860 * 10 9 7 12 12 C 1.38121 * 120.07170 * 180.02562 * 11 10 9 13 13 C 1.38198 * 120.14046 * 0.02562 * 12 11 10 14 14 C 1.38918 * 120.06539 * 0.02562 * 13 12 11 15 15 N 1.39945 * 120.03848 * 179.97438 * 14 13 12 16 16 C 1.34782 * 119.99647 * 35.13314 * 15 14 13 17 17 O 1.21588 * 119.99917 * 355.49802 * 16 15 14 18 18 N 1.34771 * 119.99712 * 175.50201 * 16 15 14 19 19 C 1.46500 * 119.99760 * 179.97438 * 18 16 15 20 20 H 1.08998 * 110.66654 * 36.76906 * 19 18 16 21 21 C 1.55000 * 110.75037 * 273.54132 * 19 18 16 22 22 C 1.55815 * 102.79190 * 241.67680 * 21 19 18 23 23 H 1.09004 * 115.38983 * 158.84032 * 22 21 19 24 24 C 1.55822 * 105.32705 * 287.31176 * 22 21 19 25 25 C 1.55003 * 102.95157 * 72.60034 * 24 22 21 26 26 C 1.55828 * 110.74650 * 160.17739 * 19 18 16 27 27 H 1.08996 * 115.38610 * 319.48730 * 26 19 18 28 28 O 1.46529 * 101.24355 * 32.41942 * 22 21 19 29 29 C 1.38730 * 120.03503 * 5.66545 * 10 9 7 30 30 H 0.96996 * 120.00122 * 359.97438 * 1 2 3 31 31 H 1.08002 * 119.96832 * 0.02562 * 11 10 9 32 32 H 1.08007 * 119.93233 * 180.02562 * 12 11 10 33 33 H 1.07996 * 119.97358 * 179.97438 * 13 12 11 34 34 H 0.97002 * 120.00163 * 215.13167 * 15 14 13 35 35 H 0.97006 * 120.00393 * 359.97438 * 18 16 15 36 36 H 1.09006 * 110.74480 * 123.35063 * 21 19 18 37 37 H 1.08994 * 110.90526 * 0.08303 * 21 19 18 38 38 H 1.09005 * 110.74776 * 191.01283 * 24 22 21 39 39 H 1.09001 * 110.75348 * 314.18310 * 24 22 21 40 40 H 1.08998 * 110.75194 * 118.41597 * 25 24 22 41 41 H 1.09004 * 110.74630 * 241.76451 * 25 24 22 42 42 H 1.08001 * 120.07259 * 359.97438 * 29 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2496 1.6177 0.0000 4 1 3.7096 1.3463 0.0006 5 1 1.8909 2.3965 -1.2124 6 1 1.8909 2.3964 1.2126 7 6 2.0089 -1.2008 -0.0005 8 1 3.0889 -1.2008 -0.0010 9 8 1.3348 -2.3685 -0.0005 10 6 2.0700 -3.5046 -0.1069 11 6 1.4355 -4.7350 -0.2259 12 6 2.1829 -5.8915 -0.3336 13 6 3.5634 -5.8292 -0.3229 14 6 4.2037 -4.6022 -0.2032 15 7 5.6018 -4.5397 -0.1919 16 6 6.3206 -5.3950 -0.9457 17 8 5.7591 -6.2732 -1.5717 18 7 7.6618 -5.2769 -1.0056 19 6 8.4432 -6.2069 -1.8245 20 1 7.9068 -6.4578 -2.7396 21 6 8.7897 -7.4871 -1.0224 22 6 10.3473 -7.4623 -0.9890 23 1 10.8072 -8.0492 -0.1939 24 6 10.7962 -7.8294 -2.4353 25 6 10.4491 -6.5519 -3.2416 26 6 9.8467 -5.6122 -2.1481 27 1 9.8599 -4.5488 -2.3869 28 8 10.6097 -6.0209 -0.9656 29 6 3.4557 -3.4390 -0.0909 30 1 -0.4850 0.8400 0.0004 31 1 0.3568 -4.7872 -0.2342 32 1 1.6874 -6.8467 -0.4264 33 1 4.1451 -6.7352 -0.4069 34 1 6.0534 -3.8809 0.3585 35 1 8.1098 -4.5761 -0.5064 36 1 8.4287 -8.3763 -1.5394 37 1 8.3809 -7.4364 -0.0133 38 1 11.8675 -8.0278 -2.4685 39 1 10.2346 -8.6859 -2.8083 40 1 11.3474 -6.1138 -3.6765 41 1 9.7122 -6.7712 -4.0142 42 1 3.9512 -2.4842 0.0057 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000265347629.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:14:05 Heat of formation + Delta-G solvation = -51.667598 kcal Electronic energy + Delta-G solvation = -25972.646521 eV Core-core repulsion = 22112.227320 eV Total energy + Delta-G solvation = -3860.419201 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.32778 -40.07794 -38.67250 -36.53825 -34.50652 -34.18913 -32.45652 -32.20709 -30.33224 -29.74531 -28.94643 -28.03163 -25.28967 -23.17016 -22.10507 -21.76768 -21.55997 -20.55160 -20.38653 -18.61277 -17.87563 -17.52138 -17.13754 -16.34617 -15.68769 -15.50808 -15.08835 -14.95133 -14.67410 -14.46886 -14.17392 -13.88559 -13.77055 -13.54083 -12.95497 -12.93281 -12.64536 -12.32074 -12.08199 -11.78819 -11.73009 -11.59869 -11.51833 -11.37097 -11.16372 -11.00703 -10.82809 -10.75717 -10.44056 -10.39232 -9.97451 -9.57969 -9.42026 -9.19908 -8.79293 -7.69212 -7.11772 -6.43562 -4.03191 2.08302 2.42821 2.63604 3.11440 3.12857 3.18244 3.29080 3.40647 3.96568 4.07340 4.19434 4.22609 4.29919 4.52136 4.63017 4.69027 4.81425 4.88712 5.09943 5.10125 5.15201 5.32455 5.38434 5.46065 5.56163 5.62706 5.68768 5.73488 5.79007 6.04086 6.11463 6.12491 6.26520 6.28590 6.42057 6.59151 6.82430 7.03197 7.13794 7.30539 7.36902 7.45689 7.85860 8.00648 8.04224 8.63893 9.02061 9.73117 10.74724 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.018716 B = 0.002721 C = 0.002441 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1495.672413 B =10286.492781 C =11468.535482 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.863 5.863 2 C 0.039 3.961 3 Si 0.940 3.060 4 H -0.268 1.268 5 H -0.276 1.276 6 H -0.276 1.276 7 C -0.391 4.391 8 H 0.090 0.910 9 O -0.178 6.178 10 C 0.168 3.832 11 C -0.201 4.201 12 C -0.065 4.065 13 C -0.204 4.204 14 C 0.196 3.804 15 N -0.682 5.682 16 C 0.704 3.296 17 O -0.571 6.571 18 N -0.738 5.738 19 C 0.140 3.860 20 H 0.102 0.898 21 C -0.159 4.159 22 C 0.062 3.938 23 H 0.131 0.869 24 C -0.151 4.151 25 C -0.145 4.145 26 C 0.056 3.944 27 H 0.136 0.864 28 O -0.371 6.371 29 C -0.258 4.258 30 H 0.269 0.731 31 H 0.118 0.882 32 H 0.115 0.885 33 H 0.125 0.875 34 H 0.402 0.598 35 H 0.398 0.602 36 H 0.084 0.916 37 H 0.080 0.920 38 H 0.074 0.926 39 H 0.079 0.921 40 H 0.079 0.921 41 H 0.081 0.919 42 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.424 -12.218 -2.918 24.835 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.498 5.498 2 C -0.165 4.165 3 Si 0.765 3.235 4 H -0.192 1.192 5 H -0.202 1.202 6 H -0.202 1.202 7 C -0.467 4.467 8 H 0.108 0.892 9 O -0.081 6.081 10 C 0.114 3.886 11 C -0.221 4.221 12 C -0.084 4.084 13 C -0.225 4.225 14 C 0.102 3.898 15 N -0.328 5.328 16 C 0.405 3.595 17 O -0.447 6.447 18 N -0.393 5.393 19 C 0.033 3.967 20 H 0.120 0.880 21 C -0.198 4.198 22 C 0.004 3.996 23 H 0.148 0.852 24 C -0.188 4.188 25 C -0.183 4.183 26 C -0.002 4.002 27 H 0.153 0.847 28 O -0.290 6.290 29 C -0.280 4.280 30 H 0.079 0.921 31 H 0.136 0.864 32 H 0.133 0.867 33 H 0.143 0.857 34 H 0.237 0.763 35 H 0.232 0.768 36 H 0.102 0.898 37 H 0.098 0.902 38 H 0.093 0.907 39 H 0.097 0.903 40 H 0.098 0.902 41 H 0.100 0.900 42 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges 20.650 -12.670 -3.341 24.457 hybrid contribution 0.858 1.445 0.371 1.721 sum 21.508 -11.225 -2.969 24.442 Atomic orbital electron populations 1.70048 1.05909 1.27478 1.46382 1.25273 0.95831 0.98761 0.96673 0.85662 0.79026 0.80539 0.78238 1.19239 1.20176 1.20180 1.21317 0.91680 0.80884 1.52861 0.89219 1.84006 1.33962 1.11325 1.78812 1.19045 0.89349 0.88173 0.92027 1.20256 0.99714 0.90309 1.11785 1.20551 0.93138 0.96860 0.97829 1.20705 0.94242 0.96346 1.11181 1.17196 0.79762 0.93706 0.99136 1.42562 1.05534 1.37567 1.47155 1.15909 0.81270 0.82259 0.80091 1.90925 1.69680 1.35609 1.48525 1.45068 1.04901 1.36377 1.52954 1.22516 0.91028 0.88654 0.94462 0.87972 1.23744 0.95414 0.98627 1.02064 1.24719 0.94677 0.82824 0.97380 0.85164 1.23280 1.02138 0.98168 0.95251 1.23254 1.01718 0.95567 0.97809 1.25026 0.89122 1.00043 0.86037 0.84688 1.90086 1.71228 1.21258 1.46384 1.20793 0.93952 0.97072 1.16146 0.92109 0.86433 0.86678 0.85733 0.76303 0.76772 0.89758 0.90159 0.90739 0.90275 0.90241 0.90027 0.85330 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -25.32 13.67 55.48 0.76 -24.56 16 2 C 0.04 1.06 5.49 -17.51 -0.10 0.96 16 3 Si 0.94 20.41 29.55 -169.99 -5.02 15.38 16 4 H -0.27 -5.53 7.11 56.52 0.40 -5.13 16 5 H -0.28 -5.90 7.11 56.52 0.40 -5.50 16 6 H -0.28 -5.87 7.11 56.52 0.40 -5.47 16 7 C -0.39 -10.88 9.49 30.89 0.29 -10.58 16 8 H 0.09 2.30 5.20 -52.49 -0.27 2.03 16 9 O -0.18 -5.07 9.76 0.06 0.00 -5.07 16 10 C 0.17 4.11 6.64 -39.14 -0.26 3.85 16 11 C -0.20 -4.37 9.99 -39.36 -0.39 -4.76 16 12 C -0.06 -1.25 10.03 -39.64 -0.40 -1.64 16 13 C -0.20 -4.00 8.69 -39.34 -0.34 -4.34 16 14 C 0.20 3.81 6.29 -83.71 -0.53 3.28 16 15 N -0.68 -10.50 5.34 -14.24 -0.08 -10.57 16 16 C 0.70 10.69 8.40 -86.92 -0.73 9.96 16 17 O -0.57 -10.67 13.51 5.29 0.07 -10.60 16 18 N -0.74 -8.06 5.13 -56.18 -0.29 -8.34 16 19 C 0.14 1.35 2.79 -65.36 -0.18 1.17 16 20 H 0.10 1.12 7.37 -51.93 -0.38 0.74 16 21 C -0.16 -1.42 6.30 -24.17 -0.15 -1.57 16 22 C 0.06 0.46 5.71 -23.72 -0.14 0.32 16 23 H 0.13 0.76 8.14 -51.93 -0.42 0.34 16 24 C -0.15 -0.92 6.51 -24.17 -0.16 -1.08 16 25 C -0.15 -0.93 6.55 -23.93 -0.16 -1.08 16 26 C 0.06 0.44 5.28 -23.48 -0.12 0.31 16 27 H 0.14 0.89 8.14 -51.93 -0.42 0.47 16 28 O -0.37 -3.50 11.65 -35.23 -0.41 -3.91 16 29 C -0.26 -5.63 9.08 -39.21 -0.36 -5.98 16 30 H 0.27 7.22 8.31 -40.82 -0.34 6.88 16 31 H 0.12 2.44 8.06 -52.49 -0.42 2.02 16 32 H 0.12 1.85 8.06 -52.48 -0.42 1.42 16 33 H 0.12 2.43 6.22 -52.49 -0.33 2.10 16 34 H 0.40 4.91 8.84 -40.82 -0.36 4.55 16 35 H 0.40 3.47 8.64 -40.82 -0.35 3.12 16 36 H 0.08 0.72 7.81 -51.93 -0.41 0.31 16 37 H 0.08 0.82 8.00 -51.93 -0.42 0.41 16 38 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 39 H 0.08 0.42 7.81 -51.93 -0.41 0.02 16 40 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16 41 H 0.08 0.48 7.81 -51.93 -0.41 0.08 16 42 H 0.13 2.75 5.64 -52.49 -0.30 2.46 16 LS Contribution 347.51 15.07 5.24 5.24 Total: -1.00 -34.04 347.51 -8.74 -42.79 By element: Atomic # 1 Polarization: 16.14 SS G_CDS: -5.29 Total: 10.84 kcal Atomic # 6 Polarization: -7.47 SS G_CDS: -3.72 Total: -11.19 kcal Atomic # 7 Polarization: -43.88 SS G_CDS: 0.39 Total: -43.48 kcal Atomic # 8 Polarization: -19.24 SS G_CDS: -0.34 Total: -19.58 kcal Atomic # 14 Polarization: 20.41 SS G_CDS: -5.02 Total: 15.38 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -34.04 -8.74 -42.79 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000265347629.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.882 kcal (2) G-P(sol) polarization free energy of solvation -34.043 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.925 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.742 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.785 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.668 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds