Wall clock time and date at job start Tue Mar 31 2020 12:14:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31564 * 1 3 3 Si 1.86797 * 120.00057 * 2 1 4 4 H 1.48494 * 109.47017 * 179.97438 * 3 2 1 5 5 H 1.48498 * 109.47396 * 300.00389 * 3 2 1 6 6 H 1.48508 * 109.47042 * 60.00390 * 3 2 1 7 7 C 1.38655 * 119.99851 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99903 * 179.97438 * 7 2 1 9 9 O 1.34830 * 120.00208 * 359.97438 * 7 2 1 10 10 C 1.35746 * 117.00006 * 174.98061 * 9 7 2 11 11 C 1.38949 * 120.03315 * 185.37860 * 10 9 7 12 12 C 1.38121 * 120.07170 * 180.02562 * 11 10 9 13 13 C 1.38198 * 120.14046 * 0.02562 * 12 11 10 14 14 C 1.38918 * 120.06539 * 0.02562 * 13 12 11 15 15 N 1.39945 * 120.03848 * 179.97438 * 14 13 12 16 16 C 1.34782 * 119.99647 * 35.13314 * 15 14 13 17 17 O 1.21588 * 119.99917 * 355.49802 * 16 15 14 18 18 N 1.34771 * 119.99712 * 175.50201 * 16 15 14 19 19 C 1.46500 * 119.99760 * 179.97438 * 18 16 15 20 20 H 1.08998 * 110.66654 * 36.76906 * 19 18 16 21 21 C 1.55000 * 110.75037 * 273.54132 * 19 18 16 22 22 C 1.55815 * 102.79190 * 241.67680 * 21 19 18 23 23 H 1.09004 * 115.38983 * 158.84032 * 22 21 19 24 24 C 1.55822 * 105.32705 * 287.31176 * 22 21 19 25 25 C 1.55003 * 102.95157 * 72.60034 * 24 22 21 26 26 C 1.55828 * 110.74650 * 160.17739 * 19 18 16 27 27 H 1.08996 * 115.38610 * 319.48730 * 26 19 18 28 28 O 1.46529 * 101.24355 * 32.41942 * 22 21 19 29 29 C 1.38730 * 120.03503 * 5.66545 * 10 9 7 30 30 H 0.96996 * 120.00122 * 359.97438 * 1 2 3 31 31 H 1.08002 * 119.96832 * 0.02562 * 11 10 9 32 32 H 1.08007 * 119.93233 * 180.02562 * 12 11 10 33 33 H 1.07996 * 119.97358 * 179.97438 * 13 12 11 34 34 H 0.97002 * 120.00163 * 215.13167 * 15 14 13 35 35 H 0.97006 * 120.00393 * 359.97438 * 18 16 15 36 36 H 1.09006 * 110.74480 * 123.35063 * 21 19 18 37 37 H 1.08994 * 110.90526 * 0.08303 * 21 19 18 38 38 H 1.09005 * 110.74776 * 191.01283 * 24 22 21 39 39 H 1.09001 * 110.75348 * 314.18310 * 24 22 21 40 40 H 1.08998 * 110.75194 * 118.41597 * 25 24 22 41 41 H 1.09004 * 110.74630 * 241.76451 * 25 24 22 42 42 H 1.08001 * 120.07259 * 359.97438 * 29 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2496 1.6177 0.0000 4 1 3.7096 1.3463 0.0006 5 1 1.8909 2.3965 -1.2124 6 1 1.8909 2.3964 1.2126 7 6 2.0089 -1.2008 -0.0005 8 1 3.0889 -1.2008 -0.0010 9 8 1.3348 -2.3685 -0.0005 10 6 2.0700 -3.5046 -0.1069 11 6 1.4355 -4.7350 -0.2259 12 6 2.1829 -5.8915 -0.3336 13 6 3.5634 -5.8292 -0.3229 14 6 4.2037 -4.6022 -0.2032 15 7 5.6018 -4.5397 -0.1919 16 6 6.3206 -5.3950 -0.9457 17 8 5.7591 -6.2732 -1.5717 18 7 7.6618 -5.2769 -1.0056 19 6 8.4432 -6.2069 -1.8245 20 1 7.9068 -6.4578 -2.7396 21 6 8.7897 -7.4871 -1.0224 22 6 10.3473 -7.4623 -0.9890 23 1 10.8072 -8.0492 -0.1939 24 6 10.7962 -7.8294 -2.4353 25 6 10.4491 -6.5519 -3.2416 26 6 9.8467 -5.6122 -2.1481 27 1 9.8599 -4.5488 -2.3869 28 8 10.6097 -6.0209 -0.9656 29 6 3.4557 -3.4390 -0.0909 30 1 -0.4850 0.8400 0.0004 31 1 0.3568 -4.7872 -0.2342 32 1 1.6874 -6.8467 -0.4264 33 1 4.1451 -6.7352 -0.4069 34 1 6.0534 -3.8809 0.3585 35 1 8.1098 -4.5761 -0.5064 36 1 8.4287 -8.3763 -1.5394 37 1 8.3809 -7.4364 -0.0133 38 1 11.8675 -8.0278 -2.4685 39 1 10.2346 -8.6859 -2.8083 40 1 11.3474 -6.1138 -3.6765 41 1 9.7122 -6.7712 -4.0142 42 1 3.9512 -2.4842 0.0057 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000265347629.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:14:04 Heat of formation + Delta-G solvation = -75.831692 kcal Electronic energy + Delta-G solvation = -25973.694355 eV Core-core repulsion = 22112.227320 eV Total energy + Delta-G solvation = -3861.467035 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -42.13473 -41.33252 -40.33215 -38.21701 -35.64796 -35.56332 -34.21181 -33.06861 -31.22214 -30.83464 -30.42046 -29.28546 -27.27921 -24.28913 -23.47393 -22.91114 -22.43130 -21.72427 -21.20945 -20.11102 -19.42108 -19.03006 -18.02420 -17.41539 -16.91681 -16.69017 -16.46335 -16.32635 -15.91008 -15.76419 -15.51090 -15.34805 -15.33452 -14.57150 -14.47710 -14.19802 -13.62126 -13.51996 -13.37035 -13.13747 -12.81427 -12.67750 -12.63617 -12.45086 -12.39492 -12.16703 -12.08758 -11.96482 -11.54550 -11.40200 -11.26789 -11.05614 -11.02995 -10.72785 -10.18000 -9.32672 -8.84552 -8.45546 -6.14152 0.45558 0.72285 1.36383 1.44753 1.49400 1.54608 2.02279 2.18422 2.78592 2.85550 3.10972 3.17400 3.49680 3.52509 3.61992 3.70878 3.91623 4.06652 4.12644 4.23429 4.34721 4.36193 4.40214 4.46982 4.53768 4.65239 4.73617 4.80871 4.97551 5.01256 5.01869 5.05973 5.12348 5.12896 5.18418 5.34743 5.43526 5.49024 5.59935 5.68723 5.71251 5.93766 6.03213 6.22204 6.91314 6.99062 7.42737 7.78988 8.77795 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.018716 B = 0.002721 C = 0.002441 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1495.672413 B =10286.492781 C =11468.535482 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.920 5.920 2 C -0.023 4.023 3 Si 1.019 2.981 4 H -0.249 1.249 5 H -0.271 1.271 6 H -0.269 1.269 7 C -0.412 4.412 8 H 0.103 0.897 9 O -0.227 6.227 10 C 0.134 3.866 11 C -0.214 4.214 12 C -0.052 4.052 13 C -0.199 4.199 14 C 0.204 3.796 15 N -0.674 5.674 16 C 0.703 3.297 17 O -0.606 6.606 18 N -0.718 5.718 19 C 0.132 3.868 20 H 0.090 0.910 21 C -0.158 4.158 22 C 0.063 3.937 23 H 0.146 0.854 24 C -0.148 4.148 25 C -0.145 4.145 26 C 0.060 3.940 27 H 0.148 0.852 28 O -0.389 6.389 29 C -0.260 4.260 30 H 0.272 0.728 31 H 0.119 0.881 32 H 0.153 0.847 33 H 0.134 0.866 34 H 0.419 0.581 35 H 0.411 0.589 36 H 0.086 0.914 37 H 0.065 0.935 38 H 0.084 0.916 39 H 0.086 0.914 40 H 0.089 0.911 41 H 0.085 0.915 42 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 24.618 -12.944 -3.267 28.005 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.559 5.559 2 C -0.221 4.221 3 Si 0.838 3.162 4 H -0.172 1.172 5 H -0.196 1.196 6 H -0.194 1.194 7 C -0.488 4.488 8 H 0.120 0.880 9 O -0.133 6.133 10 C 0.083 3.917 11 C -0.234 4.234 12 C -0.071 4.071 13 C -0.219 4.219 14 C 0.108 3.892 15 N -0.322 5.322 16 C 0.404 3.596 17 O -0.485 6.485 18 N -0.374 5.374 19 C 0.027 3.973 20 H 0.108 0.892 21 C -0.197 4.197 22 C 0.005 3.995 23 H 0.164 0.836 24 C -0.186 4.186 25 C -0.183 4.183 26 C 0.002 3.998 27 H 0.165 0.835 28 O -0.308 6.308 29 C -0.282 4.282 30 H 0.081 0.919 31 H 0.137 0.863 32 H 0.171 0.829 33 H 0.151 0.849 34 H 0.256 0.744 35 H 0.248 0.752 36 H 0.105 0.895 37 H 0.084 0.916 38 H 0.102 0.898 39 H 0.105 0.895 40 H 0.108 0.892 41 H 0.104 0.896 42 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges 23.938 -13.428 -3.676 27.692 hybrid contribution -0.006 1.373 0.456 1.447 sum 23.932 -12.055 -3.220 26.989 Atomic orbital electron populations 1.70195 1.08050 1.28723 1.48894 1.26591 0.96839 1.02735 0.95896 0.84526 0.78360 0.74850 0.78443 1.17208 1.19620 1.19384 1.21848 0.92523 0.81336 1.53085 0.87956 1.83977 1.35589 1.12454 1.81271 1.19565 0.90664 0.88041 0.93410 1.20483 1.00229 0.90372 1.12318 1.20930 0.93039 0.97478 0.95646 1.20993 0.94587 0.96661 1.09701 1.17194 0.81608 0.92848 0.97529 1.42425 1.04062 1.38222 1.47530 1.16024 0.82354 0.81624 0.79612 1.90897 1.70700 1.37035 1.49900 1.44965 1.03368 1.36599 1.52424 1.22707 0.91679 0.89099 0.93852 0.89205 1.23706 0.96801 0.98261 1.00969 1.24883 0.93425 0.82271 0.98877 0.83645 1.23294 1.02872 0.98286 0.94135 1.23288 1.02147 0.95356 0.97473 1.25129 0.87451 1.01004 0.86210 0.83471 1.90076 1.71350 1.22333 1.47048 1.20802 0.93205 0.97969 1.16216 0.91864 0.86291 0.82913 0.84870 0.74388 0.75218 0.89508 0.91610 0.89761 0.89523 0.89214 0.89639 0.85319 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -56.22 13.67 21.61 0.30 -55.93 16 2 C -0.02 -1.30 5.49 84.83 0.47 -0.84 16 3 Si 1.02 42.17 29.55 68.60 2.03 44.20 16 4 H -0.25 -9.36 7.11 99.48 0.71 -8.65 16 5 H -0.27 -10.87 7.11 99.48 0.71 -10.16 16 6 H -0.27 -10.68 7.11 99.48 0.71 -9.97 16 7 C -0.41 -23.65 9.49 67.92 0.64 -23.00 16 8 H 0.10 5.34 5.20 -2.91 -0.02 5.33 16 9 O -0.23 -13.57 9.76 -22.69 -0.22 -13.79 16 10 C 0.13 6.76 6.64 22.56 0.15 6.91 16 11 C -0.21 -9.40 9.99 22.41 0.22 -9.18 16 12 C -0.05 -1.93 10.03 22.23 0.22 -1.71 16 13 C -0.20 -7.46 8.69 22.42 0.19 -7.26 16 14 C 0.20 7.69 6.29 38.13 0.24 7.93 16 15 N -0.67 -19.62 5.34 -317.22 -1.69 -21.31 16 16 C 0.70 20.16 8.40 179.05 1.50 21.66 16 17 O -0.61 -21.80 13.51 -3.99 -0.05 -21.85 16 18 N -0.72 -14.32 5.13 -449.91 -2.31 -16.62 16 19 C 0.13 2.33 2.79 46.65 0.13 2.46 16 20 H 0.09 1.85 7.37 -2.39 -0.02 1.83 16 21 C -0.16 -2.55 6.30 32.25 0.20 -2.35 16 22 C 0.06 0.78 5.71 32.54 0.19 0.97 16 23 H 0.15 1.33 8.14 -2.39 -0.02 1.32 16 24 C -0.15 -1.41 6.51 32.26 0.21 -1.20 16 25 C -0.14 -1.47 6.55 32.41 0.21 -1.26 16 26 C 0.06 0.80 5.28 32.70 0.17 0.97 16 27 H 0.15 1.55 8.14 -2.39 -0.02 1.53 16 28 O -0.39 -6.40 11.65 -148.98 -1.74 -8.13 16 29 C -0.26 -11.39 9.08 22.51 0.20 -11.18 16 30 H 0.27 15.20 8.31 -92.71 -0.77 14.43 16 31 H 0.12 5.07 8.06 -2.91 -0.02 5.05 16 32 H 0.15 4.44 8.06 -2.91 -0.02 4.41 16 33 H 0.13 4.89 6.22 -2.91 -0.02 4.87 16 34 H 0.42 9.37 8.84 -92.71 -0.82 8.55 16 35 H 0.41 6.20 8.64 -92.70 -0.80 5.40 16 36 H 0.09 1.34 7.81 -2.38 -0.02 1.33 16 37 H 0.07 1.26 8.00 -2.39 -0.02 1.24 16 38 H 0.08 0.67 8.14 -2.38 -0.02 0.65 16 39 H 0.09 0.71 7.81 -2.39 -0.02 0.69 16 40 H 0.09 0.76 8.14 -2.39 -0.02 0.74 16 41 H 0.09 0.81 7.81 -2.38 -0.02 0.80 16 42 H 0.13 5.53 5.64 -2.91 -0.02 5.51 16 Total: -1.00 -76.40 347.51 0.74 -75.66 By element: Atomic # 1 Polarization: 35.41 SS G_CDS: -0.54 Total: 34.87 kcal Atomic # 6 Polarization: -22.06 SS G_CDS: 4.97 Total: -17.09 kcal Atomic # 7 Polarization: -90.16 SS G_CDS: -3.71 Total: -93.86 kcal Atomic # 8 Polarization: -41.76 SS G_CDS: -2.01 Total: -43.77 kcal Atomic # 14 Polarization: 42.17 SS G_CDS: 2.03 Total: 44.20 kcal Total: -76.40 0.74 -75.66 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000265347629.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.173 kcal (2) G-P(sol) polarization free energy of solvation -76.399 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.572 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.740 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.659 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.832 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds