Wall clock time and date at job start Tue Mar 31 2020 12:44:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53778 * 113.61346 * 2 1 4 4 C 1.53778 * 87.08423 * 89.11242 * 3 2 1 5 5 N 1.46501 * 113.61397 * 139.97802 * 4 3 2 6 6 C 1.34773 * 120.00158 * 155.00516 * 5 4 3 7 7 O 1.21367 * 119.99589 * 359.97438 * 6 5 4 8 8 C 1.49348 * 120.00309 * 180.02562 * 6 5 4 9 9 O 1.21377 * 120.00094 * 359.97438 * 8 6 5 10 10 N 1.34778 * 120.00277 * 179.72511 * 8 6 5 11 11 C 1.39727 * 120.00168 * 175.76998 * 10 8 6 12 12 C 1.39025 * 120.03712 * 214.86046 * 11 10 8 13 13 C 1.38139 * 120.05502 * 179.71545 * 12 11 10 14 14 C 1.38180 * 120.14637 * 0.55717 * 13 12 11 15 15 C 1.38921 * 120.08260 * 359.72163 * 14 13 12 16 16 O 1.35752 * 120.02829 * 179.97438 * 15 14 13 17 17 C 1.34826 * 117.00333 * 5.36569 * 16 15 14 18 18 H 1.08008 * 119.99982 * 354.96631 * 17 16 15 19 19 C 1.38655 * 120.00231 * 174.96492 * 17 16 15 20 20 N 1.31555 * 119.99546 * 359.97438 * 19 17 16 21 21 Si 1.86793 * 120.00205 * 180.02562 * 19 17 16 22 22 H 1.48493 * 109.47462 * 89.99628 * 21 19 17 23 23 H 1.48503 * 109.47040 * 209.99928 * 21 19 17 24 24 H 1.48501 * 109.47194 * 329.99896 * 21 19 17 25 25 C 1.38758 * 119.93559 * 359.97438 * 15 14 13 26 26 C 1.53782 * 87.07960 * 25.43450 * 4 3 2 27 27 H 1.09000 * 109.47367 * 60.00192 * 1 2 3 28 28 H 1.08998 * 109.47017 * 180.02562 * 1 2 3 29 29 H 1.09001 * 109.47338 * 299.99912 * 1 2 3 30 30 H 1.08999 * 112.85002 * 228.80204 * 2 1 3 31 31 H 1.09009 * 113.61404 * 334.56719 * 3 2 1 32 32 H 1.08999 * 113.61523 * 203.66503 * 3 2 1 33 33 H 1.08990 * 113.61598 * 270.80285 * 4 3 2 34 34 H 0.97003 * 119.99984 * 335.00393 * 5 4 3 35 35 H 0.97005 * 119.99921 * 355.76356 * 10 8 6 36 36 H 1.07998 * 119.97008 * 359.97438 * 12 11 10 37 37 H 1.08000 * 119.92416 * 180.27452 * 13 12 11 38 38 H 1.07998 * 119.95798 * 179.69208 * 14 13 12 39 39 H 0.97007 * 119.99810 * 180.02562 * 20 19 17 40 40 H 1.08003 * 120.06749 * 180.02562 * 25 15 14 41 41 H 1.09000 * 113.61817 * 89.11276 * 26 4 3 42 42 H 1.09001 * 113.61515 * 220.01907 * 26 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1460 1.4090 0.0000 4 6 2.0928 1.3469 1.5356 5 7 3.2739 1.9184 2.1873 6 6 3.1851 2.3958 3.4445 7 8 2.1265 2.3526 4.0366 8 6 4.3890 2.9790 4.1086 9 8 5.4475 3.0226 3.5163 10 7 4.2988 3.4615 5.3639 11 6 5.4430 3.9258 6.0177 12 6 5.5825 3.7451 7.3891 13 6 6.7162 4.1988 8.0350 14 6 7.7095 4.8435 7.3228 15 6 7.5736 5.0324 5.9532 16 8 8.5499 5.6663 5.2547 17 6 9.6731 5.9887 5.9274 18 1 9.7336 5.8155 6.9918 19 6 10.7504 6.5425 5.2528 20 7 10.6768 6.7529 3.9562 21 14 12.3067 6.9884 6.1845 22 1 13.2290 5.8247 6.1935 23 1 12.9688 8.1397 5.5200 24 1 11.9596 7.3555 7.5810 25 6 6.4391 4.5724 5.3000 26 6 2.1460 -0.1838 1.3970 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3634 0.5138 0.8900 30 1 1.9532 -0.6616 -0.7558 31 1 1.4944 2.1704 -0.4289 32 1 3.1590 1.4427 -0.4009 33 1 1.1573 1.7164 1.9554 34 1 4.1199 1.9532 1.7139 35 1 3.4396 3.4864 5.8134 36 1 4.8057 3.2459 7.9493 37 1 6.8243 4.0534 9.0997 38 1 8.5923 5.2014 7.8317 39 1 11.4307 7.1400 3.4841 40 1 6.3315 4.7177 4.2352 41 1 3.1590 -0.5856 1.3781 42 1 1.4945 -0.7084 2.0959 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000267727157.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:44:52 Heat of formation + Delta-G solvation = -46.063556 kcal Electronic energy + Delta-G solvation = -25395.147284 eV Core-core repulsion = 21534.971092 eV Total energy + Delta-G solvation = -3860.176191 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.01689 -39.92341 -38.87563 -38.11675 -36.62444 -34.55928 -33.65291 -32.26636 -29.72087 -29.25741 -28.62346 -26.10844 -25.70233 -25.16171 -23.27705 -22.00969 -21.31580 -20.35561 -19.41080 -18.55394 -18.03672 -17.23862 -17.03887 -16.19193 -15.93341 -15.45773 -15.11519 -15.05525 -14.54523 -14.41857 -14.21199 -13.97408 -13.66733 -13.53169 -13.43085 -12.91966 -12.80224 -12.73026 -12.55322 -11.94526 -11.86641 -11.72906 -11.57760 -11.43739 -11.11186 -11.03945 -10.83014 -10.77844 -10.64556 -10.46639 -9.86040 -9.65010 -9.39256 -9.21102 -8.83540 -7.79656 -7.23274 -6.44050 -4.03197 1.24996 2.08870 2.30300 2.37187 3.13070 3.14108 3.19131 3.22341 3.59285 3.97491 4.07476 4.12447 4.37786 4.42274 4.44264 4.56375 5.01568 5.10060 5.13035 5.24808 5.28626 5.29679 5.40779 5.51149 5.59098 5.60414 5.64921 5.78816 5.79410 5.94667 6.03486 6.12927 6.14492 6.31040 6.55548 6.68501 6.95698 7.00089 7.05017 7.31415 7.41854 7.46981 7.66530 7.75859 8.00291 8.07154 9.00833 9.71022 10.73729 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.020549 B = 0.002456 C = 0.002234 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1362.253292 B =11398.742447 C =12533.029020 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.112 4.112 3 C -0.144 4.144 4 C 0.119 3.881 5 N -0.691 5.691 6 C 0.515 3.485 7 O -0.523 6.523 8 C 0.497 3.503 9 O -0.489 6.489 10 N -0.637 5.637 11 C 0.167 3.833 12 C -0.229 4.229 13 C -0.058 4.058 14 C -0.241 4.241 15 C 0.166 3.834 16 O -0.172 6.172 17 C -0.392 4.392 18 H 0.093 0.907 19 C 0.039 3.961 20 N -0.860 5.860 21 Si 0.942 3.058 22 H -0.273 1.273 23 H -0.278 1.278 24 H -0.267 1.267 25 C -0.185 4.185 26 C -0.149 4.149 27 H 0.060 0.940 28 H 0.059 0.941 29 H 0.058 0.942 30 H 0.083 0.917 31 H 0.078 0.922 32 H 0.090 0.910 33 H 0.119 0.881 34 H 0.415 0.585 35 H 0.418 0.582 36 H 0.111 0.889 37 H 0.114 0.886 38 H 0.129 0.871 39 H 0.270 0.730 40 H 0.134 0.866 41 H 0.088 0.912 42 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.241 -11.532 -4.204 21.164 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.131 4.131 3 C -0.182 4.182 4 C 0.015 3.985 5 N -0.344 5.344 6 C 0.296 3.704 7 O -0.399 6.399 8 C 0.278 3.722 9 O -0.363 6.363 10 N -0.283 5.283 11 C 0.075 3.925 12 C -0.250 4.250 13 C -0.077 4.077 14 C -0.261 4.261 15 C 0.111 3.889 16 O -0.075 6.075 17 C -0.468 4.468 18 H 0.111 0.889 19 C -0.166 4.166 20 N -0.495 5.495 21 Si 0.767 3.233 22 H -0.199 1.199 23 H -0.203 1.203 24 H -0.192 1.192 25 C -0.206 4.206 26 C -0.188 4.188 27 H 0.079 0.921 28 H 0.078 0.922 29 H 0.077 0.923 30 H 0.102 0.898 31 H 0.096 0.904 32 H 0.109 0.891 33 H 0.137 0.863 34 H 0.252 0.748 35 H 0.255 0.745 36 H 0.129 0.871 37 H 0.132 0.868 38 H 0.147 0.853 39 H 0.080 0.920 40 H 0.152 0.848 41 H 0.106 0.894 42 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -17.089 -11.372 -4.671 21.052 hybrid contribution 0.807 0.199 0.540 0.991 sum -16.282 -11.173 -4.132 20.175 Atomic orbital electron populations 1.21641 0.93563 1.02120 1.02207 1.22167 0.96046 0.97168 0.97758 1.23446 1.02295 0.97768 0.94663 1.22751 0.89596 0.93624 0.92571 1.45802 1.14365 1.59993 1.14233 1.20149 0.88630 0.78813 0.82828 1.90745 1.29553 1.55652 1.63934 1.20146 0.88951 0.80091 0.82999 1.90863 1.29018 1.53541 1.62829 1.43005 1.11207 1.59665 1.14431 1.17180 0.87040 0.97065 0.91258 1.20308 1.00964 1.11227 0.92526 1.20520 0.92595 0.96055 0.98501 1.21219 1.02041 1.08529 0.94311 1.19105 0.89455 0.90091 0.90275 1.83987 1.22977 1.63474 1.37084 1.21353 0.89820 1.42291 0.93355 0.88934 1.25312 0.98683 0.96687 0.95882 1.70053 1.31644 1.40394 1.07359 0.85695 0.80193 0.78420 0.79012 1.19863 1.20273 1.19165 1.20149 0.94529 1.05055 1.00859 1.23534 1.02026 0.96137 0.97092 0.92120 0.92204 0.92260 0.89843 0.90364 0.89140 0.86343 0.74777 0.74537 0.87067 0.86811 0.85302 0.91990 0.84798 0.89389 0.90671 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.75 9.59 37.16 0.36 -0.39 16 2 C -0.11 -0.68 4.55 -89.81 -0.41 -1.09 16 3 C -0.14 -0.95 7.42 -25.92 -0.19 -1.15 16 4 C 0.12 1.03 3.89 -67.12 -0.26 0.77 16 5 N -0.69 -7.41 5.35 -53.48 -0.29 -7.70 16 6 C 0.52 6.92 7.89 -11.63 -0.09 6.83 16 7 O -0.52 -7.63 16.08 5.48 0.09 -7.54 16 8 C 0.50 7.93 7.73 -11.63 -0.09 7.84 16 9 O -0.49 -9.30 13.91 5.47 0.08 -9.23 16 10 N -0.64 -9.95 5.32 -10.31 -0.05 -10.00 16 11 C 0.17 3.15 6.29 -83.77 -0.53 2.62 16 12 C -0.23 -3.95 9.97 -39.33 -0.39 -4.34 16 13 C -0.06 -1.04 10.03 -39.64 -0.40 -1.44 16 14 C -0.24 -5.24 9.17 -39.35 -0.36 -5.60 16 15 C 0.17 4.11 6.64 -39.14 -0.26 3.85 16 16 O -0.17 -5.02 9.75 0.05 0.00 -5.02 16 17 C -0.39 -11.03 9.49 30.89 0.29 -10.74 16 18 H 0.09 2.38 5.20 -52.48 -0.27 2.11 16 19 C 0.04 1.08 5.49 -17.52 -0.10 0.98 16 20 N -0.86 -25.49 13.67 55.48 0.76 -24.73 16 21 Si 0.94 20.57 29.55 -169.99 -5.02 15.55 16 22 H -0.27 -5.83 7.11 56.52 0.40 -5.42 16 23 H -0.28 -5.93 7.11 56.52 0.40 -5.53 16 24 H -0.27 -5.57 7.11 56.52 0.40 -5.17 16 25 C -0.18 -4.19 8.64 -39.19 -0.34 -4.53 16 26 C -0.15 -1.11 7.44 -25.92 -0.19 -1.30 16 27 H 0.06 0.30 8.14 -51.93 -0.42 -0.13 16 28 H 0.06 0.29 8.14 -51.93 -0.42 -0.13 16 29 H 0.06 0.35 7.34 -51.93 -0.38 -0.04 16 30 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 31 H 0.08 0.49 8.10 -51.92 -0.42 0.07 16 32 H 0.09 0.57 8.12 -51.93 -0.42 0.15 16 33 H 0.12 1.12 6.98 -51.93 -0.36 0.75 16 34 H 0.42 4.18 8.20 -40.82 -0.33 3.84 16 35 H 0.42 5.37 8.30 -40.82 -0.34 5.04 16 36 H 0.11 1.56 8.06 -52.49 -0.42 1.14 16 37 H 0.11 1.67 8.06 -52.49 -0.42 1.25 16 38 H 0.13 2.76 5.63 -52.49 -0.30 2.47 16 39 H 0.27 7.32 8.31 -40.82 -0.34 6.98 16 40 H 0.13 3.20 6.23 -52.48 -0.33 2.87 16 41 H 0.09 0.66 8.14 -51.93 -0.42 0.23 16 42 H 0.07 0.57 8.10 -51.93 -0.42 0.15 16 LS Contribution 358.35 15.07 5.40 5.40 Total: -1.00 -33.03 358.35 -7.25 -40.28 By element: Atomic # 1 Polarization: 15.92 SS G_CDS: -5.25 Total: 10.68 kcal Atomic # 6 Polarization: -4.72 SS G_CDS: -2.96 Total: -7.68 kcal Atomic # 7 Polarization: -42.85 SS G_CDS: 0.42 Total: -42.43 kcal Atomic # 8 Polarization: -21.95 SS G_CDS: 0.16 Total: -21.79 kcal Atomic # 14 Polarization: 20.57 SS G_CDS: -5.02 Total: 15.55 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -33.03 -7.25 -40.28 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000267727157.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.788 kcal (2) G-P(sol) polarization free energy of solvation -33.030 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.818 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.246 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.275 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.064 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds