Wall clock time and date at job start Tue Mar 31 2020 12:44:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53778 * 113.61346 * 2 1 4 4 C 1.53778 * 87.08423 * 89.11242 * 3 2 1 5 5 N 1.46501 * 113.61397 * 139.97802 * 4 3 2 6 6 C 1.34773 * 120.00158 * 155.00516 * 5 4 3 7 7 O 1.21367 * 119.99589 * 359.97438 * 6 5 4 8 8 C 1.49348 * 120.00309 * 180.02562 * 6 5 4 9 9 O 1.21377 * 120.00094 * 359.97438 * 8 6 5 10 10 N 1.34778 * 120.00277 * 179.72511 * 8 6 5 11 11 C 1.39727 * 120.00168 * 175.76998 * 10 8 6 12 12 C 1.39025 * 120.03712 * 214.86046 * 11 10 8 13 13 C 1.38139 * 120.05502 * 179.71545 * 12 11 10 14 14 C 1.38180 * 120.14637 * 0.55717 * 13 12 11 15 15 C 1.38921 * 120.08260 * 359.72163 * 14 13 12 16 16 O 1.35752 * 120.02829 * 179.97438 * 15 14 13 17 17 C 1.34826 * 117.00333 * 5.36569 * 16 15 14 18 18 H 1.08008 * 119.99982 * 354.96631 * 17 16 15 19 19 C 1.38655 * 120.00231 * 174.96492 * 17 16 15 20 20 N 1.31555 * 119.99546 * 359.97438 * 19 17 16 21 21 Si 1.86793 * 120.00205 * 180.02562 * 19 17 16 22 22 H 1.48493 * 109.47462 * 89.99628 * 21 19 17 23 23 H 1.48503 * 109.47040 * 209.99928 * 21 19 17 24 24 H 1.48501 * 109.47194 * 329.99896 * 21 19 17 25 25 C 1.38758 * 119.93559 * 359.97438 * 15 14 13 26 26 C 1.53782 * 87.07960 * 25.43450 * 4 3 2 27 27 H 1.09000 * 109.47367 * 60.00192 * 1 2 3 28 28 H 1.08998 * 109.47017 * 180.02562 * 1 2 3 29 29 H 1.09001 * 109.47338 * 299.99912 * 1 2 3 30 30 H 1.08999 * 112.85002 * 228.80204 * 2 1 3 31 31 H 1.09009 * 113.61404 * 334.56719 * 3 2 1 32 32 H 1.08999 * 113.61523 * 203.66503 * 3 2 1 33 33 H 1.08990 * 113.61598 * 270.80285 * 4 3 2 34 34 H 0.97003 * 119.99984 * 335.00393 * 5 4 3 35 35 H 0.97005 * 119.99921 * 355.76356 * 10 8 6 36 36 H 1.07998 * 119.97008 * 359.97438 * 12 11 10 37 37 H 1.08000 * 119.92416 * 180.27452 * 13 12 11 38 38 H 1.07998 * 119.95798 * 179.69208 * 14 13 12 39 39 H 0.97007 * 119.99810 * 180.02562 * 20 19 17 40 40 H 1.08003 * 120.06749 * 180.02562 * 25 15 14 41 41 H 1.09000 * 113.61817 * 89.11276 * 26 4 3 42 42 H 1.09001 * 113.61515 * 220.01907 * 26 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1460 1.4090 0.0000 4 6 2.0928 1.3469 1.5356 5 7 3.2739 1.9184 2.1873 6 6 3.1851 2.3958 3.4445 7 8 2.1265 2.3526 4.0366 8 6 4.3890 2.9790 4.1086 9 8 5.4475 3.0226 3.5163 10 7 4.2988 3.4615 5.3639 11 6 5.4430 3.9258 6.0177 12 6 5.5825 3.7451 7.3891 13 6 6.7162 4.1988 8.0350 14 6 7.7095 4.8435 7.3228 15 6 7.5736 5.0324 5.9532 16 8 8.5499 5.6663 5.2547 17 6 9.6731 5.9887 5.9274 18 1 9.7336 5.8155 6.9918 19 6 10.7504 6.5425 5.2528 20 7 10.6768 6.7529 3.9562 21 14 12.3067 6.9884 6.1845 22 1 13.2290 5.8247 6.1935 23 1 12.9688 8.1397 5.5200 24 1 11.9596 7.3555 7.5810 25 6 6.4391 4.5724 5.3000 26 6 2.1460 -0.1838 1.3970 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3634 0.5138 0.8900 30 1 1.9532 -0.6616 -0.7558 31 1 1.4944 2.1704 -0.4289 32 1 3.1590 1.4427 -0.4009 33 1 1.1573 1.7164 1.9554 34 1 4.1199 1.9532 1.7139 35 1 3.4396 3.4864 5.8134 36 1 4.8057 3.2459 7.9493 37 1 6.8243 4.0534 9.0997 38 1 8.5923 5.2014 7.8317 39 1 11.4307 7.1400 3.4841 40 1 6.3315 4.7177 4.2352 41 1 3.1590 -0.5856 1.3781 42 1 1.4945 -0.7084 2.0959 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000267727157.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:44:51 Heat of formation + Delta-G solvation = -69.641292 kcal Electronic energy + Delta-G solvation = -25396.169691 eV Core-core repulsion = 21534.971092 eV Total energy + Delta-G solvation = -3861.198599 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -42.22105 -41.04517 -40.30691 -39.29486 -38.28532 -35.91209 -34.73552 -34.25642 -31.33717 -30.33861 -29.78070 -27.42000 -26.69505 -26.56161 -24.31544 -23.43342 -22.83941 -21.57482 -20.37825 -20.03075 -19.32583 -18.77757 -18.22734 -17.29240 -17.15799 -16.94710 -16.77460 -16.11311 -15.98492 -15.80422 -15.55733 -15.36566 -15.11640 -14.54556 -14.38090 -14.30499 -14.11059 -13.61502 -13.50271 -13.27542 -13.24228 -13.17796 -12.73818 -12.69801 -12.52450 -12.38348 -12.11379 -12.00079 -11.42927 -11.38818 -11.31776 -11.20326 -10.78036 -10.68757 -10.25981 -9.43441 -8.94916 -8.46499 -6.15828 -0.05217 0.59155 0.68372 1.16720 1.36015 1.46002 1.54217 1.97952 2.17716 2.48580 2.80628 3.14969 3.21380 3.48490 3.54743 3.56904 3.81105 3.85525 4.10887 4.33693 4.36763 4.47262 4.58096 4.58663 4.67850 4.68939 4.75416 4.90535 4.93129 4.94771 5.03211 5.10499 5.11330 5.21771 5.28574 5.34913 5.35188 5.51696 5.60273 5.70416 5.84933 6.02512 6.11935 6.23414 6.62866 6.80601 6.97319 7.78282 8.77024 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.020549 B = 0.002456 C = 0.002234 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1362.253292 B =11398.742447 C =12533.029020 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.103 4.103 3 C -0.138 4.138 4 C 0.107 3.893 5 N -0.679 5.679 6 C 0.523 3.477 7 O -0.534 6.534 8 C 0.496 3.504 9 O -0.525 6.525 10 N -0.627 5.627 11 C 0.173 3.827 12 C -0.199 4.199 13 C -0.047 4.047 14 C -0.248 4.248 15 C 0.127 3.873 16 O -0.232 6.232 17 C -0.413 4.413 18 H 0.108 0.892 19 C -0.026 4.026 20 N -0.923 5.923 21 Si 1.023 2.977 22 H -0.264 1.264 23 H -0.273 1.273 24 H -0.248 1.248 25 C -0.208 4.208 26 C -0.148 4.148 27 H 0.067 0.933 28 H 0.065 0.935 29 H 0.053 0.947 30 H 0.094 0.906 31 H 0.084 0.916 32 H 0.095 0.905 33 H 0.113 0.887 34 H 0.418 0.582 35 H 0.434 0.566 36 H 0.162 0.838 37 H 0.163 0.837 38 H 0.127 0.873 39 H 0.272 0.728 40 H 0.108 0.892 41 H 0.088 0.912 42 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.943 -13.225 -2.059 23.194 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.122 4.122 3 C -0.176 4.176 4 C 0.004 3.996 5 N -0.331 5.331 6 C 0.303 3.697 7 O -0.411 6.411 8 C 0.278 3.722 9 O -0.400 6.400 10 N -0.275 5.275 11 C 0.080 3.920 12 C -0.220 4.220 13 C -0.065 4.065 14 C -0.268 4.268 15 C 0.076 3.924 16 O -0.138 6.138 17 C -0.489 4.489 18 H 0.125 0.875 19 C -0.224 4.224 20 N -0.561 5.561 21 Si 0.842 3.158 22 H -0.189 1.189 23 H -0.197 1.197 24 H -0.172 1.172 25 C -0.229 4.229 26 C -0.186 4.186 27 H 0.086 0.914 28 H 0.084 0.916 29 H 0.072 0.928 30 H 0.112 0.888 31 H 0.103 0.897 32 H 0.113 0.887 33 H 0.130 0.870 34 H 0.256 0.744 35 H 0.275 0.725 36 H 0.180 0.820 37 H 0.180 0.820 38 H 0.145 0.855 39 H 0.081 0.919 40 H 0.126 0.874 41 H 0.106 0.894 42 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -18.881 -13.108 -2.510 23.122 hybrid contribution 0.996 0.537 -0.072 1.133 sum -17.885 -12.571 -2.582 22.013 Atomic orbital electron populations 1.21658 0.93007 1.02608 1.02302 1.22151 0.96428 0.96676 0.96971 1.23462 1.02874 0.98521 0.92786 1.23043 0.88316 0.94539 0.93710 1.45905 1.15322 1.58632 1.13199 1.19629 0.87339 0.79201 0.83552 1.90744 1.29337 1.56617 1.64396 1.20710 0.89356 0.79302 0.82796 1.90866 1.30701 1.54794 1.63615 1.42945 1.11023 1.59022 1.14472 1.17307 0.86893 0.95672 0.92166 1.20916 1.01304 1.08193 0.91548 1.21044 0.91167 0.93687 1.00627 1.21389 1.03278 1.09060 0.93074 1.19626 0.89483 0.91351 0.91957 1.83955 1.24420 1.66452 1.38963 1.21914 0.90225 1.42572 0.94230 0.87504 1.26691 1.02422 0.96349 0.96900 1.70217 1.33147 1.43069 1.09653 0.84532 0.74908 0.78294 0.78115 1.18874 1.19744 1.17178 1.20163 0.95719 1.06901 1.00121 1.23532 1.02220 0.94781 0.98083 0.91377 0.91556 0.92834 0.88762 0.89743 0.88656 0.86953 0.74424 0.72542 0.82039 0.81987 0.85537 0.91871 0.87437 0.89384 0.90776 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.24 9.59 71.98 0.69 -0.55 16 2 C -0.10 -1.05 4.55 -10.27 -0.05 -1.10 16 3 C -0.14 -1.63 7.42 31.12 0.23 -1.39 16 4 C 0.11 1.73 3.89 45.52 0.18 1.91 16 5 N -0.68 -14.13 5.35 -441.48 -2.36 -16.49 16 6 C 0.52 13.64 7.89 87.24 0.69 14.33 16 7 O -0.53 -14.80 16.08 -3.30 -0.05 -14.85 16 8 C 0.50 15.74 7.73 87.24 0.67 16.41 16 9 O -0.52 -20.66 13.91 -3.33 -0.05 -20.71 16 10 N -0.63 -18.62 5.32 -304.89 -1.62 -20.24 16 11 C 0.17 6.29 6.29 38.20 0.24 6.53 16 12 C -0.20 -5.99 9.97 22.44 0.22 -5.77 16 13 C -0.05 -1.51 10.03 22.23 0.22 -1.29 16 14 C -0.25 -10.66 9.17 22.42 0.21 -10.46 16 15 C 0.13 6.59 6.64 22.56 0.15 6.74 16 16 O -0.23 -14.47 9.75 -22.72 -0.22 -14.69 16 17 C -0.41 -24.44 9.49 67.92 0.64 -23.80 16 18 H 0.11 5.68 5.20 -2.91 -0.02 5.66 16 19 C -0.03 -1.53 5.49 84.83 0.47 -1.06 16 20 N -0.92 -58.10 13.67 21.61 0.30 -57.81 16 21 Si 1.02 43.22 29.55 68.60 2.03 45.25 16 22 H -0.26 -10.61 7.11 99.48 0.71 -9.91 16 23 H -0.27 -11.13 7.11 99.48 0.71 -10.42 16 24 H -0.25 -9.58 7.11 99.48 0.71 -8.87 16 25 C -0.21 -9.79 8.64 22.52 0.19 -9.59 16 26 C -0.15 -1.97 7.44 31.12 0.23 -1.74 16 27 H 0.07 0.52 8.14 -2.39 -0.02 0.50 16 28 H 0.07 0.52 8.14 -2.39 -0.02 0.50 16 29 H 0.05 0.55 7.34 -2.39 -0.02 0.53 16 30 H 0.09 0.81 8.14 -2.39 -0.02 0.79 16 31 H 0.08 0.91 8.10 -2.38 -0.02 0.89 16 32 H 0.09 1.05 8.12 -2.39 -0.02 1.03 16 33 H 0.11 2.00 6.98 -2.39 -0.02 1.98 16 34 H 0.42 8.35 8.20 -92.71 -0.76 7.59 16 35 H 0.43 9.97 8.30 -92.70 -0.77 9.20 16 36 H 0.16 3.38 8.06 -2.91 -0.02 3.36 16 37 H 0.16 3.74 8.06 -2.91 -0.02 3.72 16 38 H 0.13 5.41 5.63 -2.91 -0.02 5.39 16 39 H 0.27 15.66 8.31 -92.70 -0.77 14.89 16 40 H 0.11 5.56 6.23 -2.91 -0.02 5.54 16 41 H 0.09 1.19 8.14 -2.39 -0.02 1.17 16 42 H 0.07 1.02 8.10 -2.39 -0.02 1.00 16 Total: -1.00 -78.38 358.35 2.57 -75.81 By element: Atomic # 1 Polarization: 35.01 SS G_CDS: -0.45 Total: 34.56 kcal Atomic # 6 Polarization: -15.82 SS G_CDS: 4.99 Total: -10.83 kcal Atomic # 7 Polarization: -90.86 SS G_CDS: -3.69 Total: -94.54 kcal Atomic # 8 Polarization: -49.93 SS G_CDS: -0.32 Total: -50.25 kcal Atomic # 14 Polarization: 43.22 SS G_CDS: 2.03 Total: 45.25 kcal Total: -78.38 2.57 -75.81 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000267727157.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.171 kcal (2) G-P(sol) polarization free energy of solvation -78.378 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.207 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.566 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.812 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.641 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds