Wall clock time and date at job start Tue Mar 31 2020 12:11:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31555 * 1 3 3 Si 1.86797 * 120.00375 * 2 1 4 4 H 1.48506 * 109.46953 * 269.99701 * 3 2 1 5 5 H 1.48494 * 109.47187 * 29.99435 * 3 2 1 6 6 H 1.48495 * 109.47353 * 150.00076 * 3 2 1 7 7 C 1.38658 * 119.99612 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00271 * 359.97438 * 7 2 1 9 9 O 1.34828 * 119.99961 * 180.02562 * 7 2 1 10 10 C 1.35751 * 117.00270 * 185.03453 * 9 7 2 11 11 C 1.38898 * 120.06778 * 354.17533 * 10 9 7 12 12 C 1.38080 * 119.93224 * 179.67457 * 11 10 9 13 13 C 1.38324 * 120.06703 * 0.61662 * 12 11 10 14 14 C 1.38274 * 120.13763 * 359.68070 * 13 12 11 15 15 C 1.50705 * 119.96913 * 180.02562 * 14 13 12 16 16 C 1.50698 * 109.46946 * 269.97869 * 15 14 13 17 17 O 1.21279 * 120.00282 * 359.97438 * 16 15 14 18 18 N 1.34777 * 119.99612 * 179.97438 * 16 15 14 19 19 N 1.40103 * 120.00050 * 179.97438 * 18 16 15 20 20 C 1.34777 * 120.00050 * 180.02562 * 19 18 16 21 21 O 1.21279 * 120.00106 * 0.02562 * 20 19 18 22 22 C 1.50702 * 119.99908 * 179.97438 * 20 19 18 23 23 C 1.53777 * 113.61445 * 279.13793 * 22 20 19 24 24 C 1.53947 * 87.02085 * 220.04587 * 23 22 20 25 25 C 1.53779 * 113.61272 * 181.53036 * 22 20 19 26 26 C 1.38123 * 120.07175 * 359.97438 * 14 13 12 27 27 H 0.96999 * 119.99329 * 0.02562 * 1 2 3 28 28 H 1.08010 * 120.03286 * 359.97438 * 11 10 9 29 29 H 1.08001 * 119.96872 * 180.31612 * 12 11 10 30 30 H 1.08001 * 119.93406 * 179.69892 * 13 12 11 31 31 H 1.09006 * 109.46654 * 29.97662 * 15 14 13 32 32 H 1.08999 * 109.47320 * 149.97401 * 15 14 13 33 33 H 0.97004 * 120.00106 * 359.97438 * 18 16 15 34 34 H 0.96996 * 119.99499 * 359.97438 * 19 18 16 35 35 H 1.09004 * 112.84621 * 50.32919 * 22 20 19 36 36 H 1.09008 * 113.61520 * 334.56642 * 23 22 20 37 37 H 1.09005 * 113.61489 * 105.47147 * 23 22 20 38 38 H 1.08993 * 113.54009 * 270.81370 * 24 23 22 39 39 H 1.09005 * 113.66707 * 139.92898 * 24 23 22 40 40 H 1.09003 * 113.61068 * 254.52438 * 25 22 20 41 41 H 1.08997 * 113.61744 * 25.34991 * 25 22 20 42 42 H 1.07998 * 120.03894 * 180.02562 * 26 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3155 0.0000 0.0000 3 14 2.2496 1.6177 0.0000 4 1 2.4972 2.0463 -1.4001 5 1 1.4471 2.6526 0.6999 6 1 3.5472 1.4401 0.7000 7 6 2.0088 -1.2009 0.0005 8 1 1.4687 -2.1362 0.0014 9 8 3.3570 -1.2009 0.0011 10 6 3.9734 -2.4059 -0.1046 11 6 3.2238 -3.5750 -0.0851 12 6 3.8529 -4.7988 -0.1996 13 6 5.2294 -4.8618 -0.3206 14 6 5.9790 -3.6999 -0.3341 15 6 7.4784 -3.7729 -0.4667 16 6 8.1003 -3.8591 0.9033 17 8 7.3954 -3.8605 1.8902 18 7 9.4398 -3.9345 1.0318 19 7 10.0180 -4.0140 2.3054 20 6 11.3575 -4.0889 2.4339 21 8 12.0624 -4.0870 1.4470 22 6 11.9795 -4.1739 3.8039 23 6 12.1028 -2.8133 4.5100 24 6 13.4815 -3.2859 5.0056 25 6 13.5166 -4.2156 3.7811 26 6 5.3549 -2.4724 -0.2272 27 1 -0.4849 0.8401 -0.0004 28 1 2.1493 -3.5267 0.0145 29 1 3.2702 -5.7081 -0.1897 30 1 5.7197 -5.8204 -0.4050 31 1 7.7494 -4.6563 -1.0449 32 1 7.8421 -2.8801 -0.9753 33 1 10.0035 -3.9337 0.2424 34 1 9.4543 -4.0144 3.0947 35 1 11.5307 -4.9491 4.4251 36 1 12.1518 -1.9680 3.8235 37 1 11.3762 -2.6690 5.3097 38 1 13.4436 -3.8174 5.9564 39 1 14.2444 -2.5075 4.9848 40 1 13.9298 -5.2017 3.9933 41 1 13.9528 -3.7557 2.8944 42 1 5.9409 -1.5652 -0.2382 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000270538121.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:11:36 Heat of formation + Delta-G solvation = -22.271734 kcal Electronic energy + Delta-G solvation = -25126.037976 eV Core-core repulsion = 21266.893476 eV Total energy + Delta-G solvation = -3859.144500 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -40.90255 -39.84910 -38.98271 -37.81560 -36.69044 -35.42213 -32.68013 -32.34258 -31.32657 -29.44956 -27.62371 -26.48714 -26.06822 -25.14775 -22.13666 -21.88177 -21.58921 -20.49019 -19.68619 -18.21637 -18.02182 -17.68390 -17.01644 -16.53221 -16.05611 -15.68042 -15.25172 -15.19010 -14.95370 -14.54535 -14.15853 -13.91382 -13.71453 -13.49281 -13.37189 -12.93068 -12.70674 -12.58495 -12.51317 -12.19244 -11.88717 -11.71689 -11.40978 -11.33525 -11.02946 -10.90534 -10.87826 -10.82117 -10.73333 -10.40968 -10.16246 -10.02561 -9.39031 -8.86432 -8.58747 -8.18117 -7.36893 -6.40134 -4.06872 1.51583 2.03915 2.10303 2.28660 2.57095 3.22738 3.26064 3.41518 3.74748 3.97125 4.07969 4.24388 4.24949 4.32711 4.44857 4.62609 4.67890 4.87457 5.04514 5.06782 5.12070 5.22194 5.27354 5.31416 5.43658 5.49488 5.49948 5.59129 5.66039 5.82200 5.93348 6.10616 6.23762 6.42084 6.45131 6.53663 6.77461 7.07516 7.18995 7.27862 7.31114 7.59727 7.64984 7.81225 8.05047 8.17261 8.95273 9.57874 10.67621 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.017758 B = 0.002401 C = 0.002208 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1576.368062 B =11659.935493 C =12678.549471 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.880 5.880 2 C 0.063 3.937 3 Si 0.905 3.095 4 H -0.273 1.273 5 H -0.282 1.282 6 H -0.260 1.260 7 C -0.389 4.389 8 H 0.106 0.894 9 O -0.218 6.218 10 C 0.160 3.840 11 C -0.215 4.215 12 C -0.076 4.076 13 C -0.186 4.186 14 C -0.038 4.038 15 C -0.082 4.082 16 C 0.515 3.485 17 O -0.518 6.518 18 N -0.534 5.534 19 N -0.521 5.521 20 C 0.522 3.478 21 O -0.543 6.543 22 C -0.130 4.130 23 C -0.127 4.127 24 C -0.142 4.142 25 C -0.115 4.115 26 C -0.173 4.173 27 H 0.279 0.721 28 H 0.133 0.867 29 H 0.111 0.889 30 H 0.106 0.894 31 H 0.106 0.894 32 H 0.106 0.894 33 H 0.430 0.570 34 H 0.432 0.568 35 H 0.119 0.881 36 H 0.087 0.913 37 H 0.080 0.920 38 H 0.085 0.915 39 H 0.074 0.926 40 H 0.074 0.926 41 H 0.096 0.904 42 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 24.447 -8.882 5.621 26.611 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.518 5.518 2 C -0.140 4.140 3 Si 0.731 3.269 4 H -0.199 1.199 5 H -0.208 1.208 6 H -0.184 1.184 7 C -0.464 4.464 8 H 0.124 0.876 9 O -0.124 6.124 10 C 0.108 3.892 11 C -0.234 4.234 12 C -0.094 4.094 13 C -0.205 4.205 14 C -0.039 4.039 15 C -0.123 4.123 16 C 0.301 3.699 17 O -0.390 6.390 18 N -0.284 5.284 19 N -0.268 5.268 20 C 0.308 3.692 21 O -0.419 6.419 22 C -0.153 4.153 23 C -0.164 4.164 24 C -0.179 4.179 25 C -0.153 4.153 26 C -0.193 4.193 27 H 0.089 0.911 28 H 0.151 0.849 29 H 0.129 0.871 30 H 0.124 0.876 31 H 0.124 0.876 32 H 0.124 0.876 33 H 0.271 0.729 34 H 0.274 0.726 35 H 0.137 0.863 36 H 0.106 0.894 37 H 0.098 0.902 38 H 0.104 0.896 39 H 0.093 0.907 40 H 0.093 0.907 41 H 0.115 0.885 42 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges 24.283 -8.506 5.658 26.344 hybrid contribution -0.044 0.586 0.019 0.588 sum 24.239 -7.920 5.677 26.124 Atomic orbital electron populations 1.69647 1.05540 1.28431 1.48223 1.24460 0.95028 0.98798 0.95748 0.86184 0.80360 0.81472 0.78910 1.19898 1.20805 1.18387 1.20763 0.76883 0.96620 1.52162 0.87636 1.83568 1.22602 1.25610 1.80586 1.19003 0.91501 0.85579 0.93135 1.21319 1.01208 0.91950 1.08913 1.20744 0.94114 0.96777 0.97806 1.20428 0.93953 0.96409 1.09743 1.18573 0.91527 0.93151 1.00633 1.20504 0.93852 1.05333 0.92617 1.21178 0.79515 0.76128 0.93039 1.90785 1.60562 1.48096 1.39587 1.45175 1.06290 1.77612 0.99368 1.45030 1.06156 1.75298 1.00269 1.20868 0.79952 0.76108 0.92254 1.90708 1.61013 1.50596 1.39587 1.22800 0.98366 1.01377 0.92727 1.22926 0.98447 0.95087 0.99982 1.22862 0.97221 0.99666 0.98155 1.22828 0.92292 1.00896 0.99275 1.19948 0.92056 0.96970 1.10283 0.91091 0.84932 0.87089 0.87612 0.87599 0.87568 0.72851 0.72611 0.86307 0.89423 0.90157 0.89649 0.90702 0.90706 0.88547 0.86726 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.59 13.96 55.48 0.77 -24.81 16 2 C 0.06 1.77 5.49 -17.52 -0.10 1.68 16 3 Si 0.91 21.87 28.62 -169.99 -4.86 17.00 16 4 H -0.27 -6.45 7.11 56.52 0.40 -6.05 16 5 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 6 H -0.26 -6.33 7.11 56.52 0.40 -5.93 16 7 C -0.39 -11.06 9.95 30.89 0.31 -10.75 16 8 H 0.11 3.06 5.44 -52.49 -0.29 2.77 16 9 O -0.22 -5.84 8.59 0.05 0.00 -5.84 16 10 C 0.16 3.75 6.65 -39.11 -0.26 3.49 16 11 C -0.21 -4.71 9.17 -39.40 -0.36 -5.07 16 12 C -0.08 -1.40 10.04 -39.61 -0.40 -1.80 16 13 C -0.19 -3.13 9.70 -39.54 -0.38 -3.51 16 14 C -0.04 -0.63 4.37 -104.65 -0.46 -1.09 16 15 C -0.08 -0.95 5.83 -29.03 -0.17 -1.12 16 16 C 0.51 6.72 7.94 -10.99 -0.09 6.63 16 17 O -0.52 -8.95 15.87 5.56 0.09 -8.87 16 18 N -0.53 -5.70 6.26 31.22 0.20 -5.50 16 19 N -0.52 -5.22 6.26 31.22 0.20 -5.03 16 20 C 0.52 5.06 7.47 -10.98 -0.08 4.98 16 21 O -0.54 -6.88 15.75 5.56 0.09 -6.80 16 22 C -0.13 -0.84 4.14 -90.96 -0.38 -1.22 16 23 C -0.13 -0.72 7.64 -25.83 -0.20 -0.92 16 24 C -0.14 -0.69 8.09 -25.83 -0.21 -0.90 16 25 C -0.11 -0.72 7.40 -25.92 -0.19 -0.91 16 26 C -0.17 -3.46 9.65 -39.39 -0.38 -3.84 16 27 H 0.28 7.49 8.31 -40.82 -0.34 7.15 16 28 H 0.13 3.04 5.64 -52.48 -0.30 2.74 16 29 H 0.11 1.73 8.06 -52.49 -0.42 1.31 16 30 H 0.11 1.48 8.06 -52.49 -0.42 1.05 16 31 H 0.11 0.91 8.09 -51.93 -0.42 0.49 16 32 H 0.11 1.01 8.08 -51.93 -0.42 0.59 16 33 H 0.43 3.88 8.00 -182.59 -1.46 2.41 16 34 H 0.43 4.04 8.00 -182.60 -1.46 2.58 16 35 H 0.12 0.55 8.14 -51.93 -0.42 0.12 16 36 H 0.09 0.58 8.09 -51.92 -0.42 0.16 16 37 H 0.08 0.38 8.14 -51.93 -0.42 -0.04 16 38 H 0.08 0.32 8.14 -51.93 -0.42 -0.10 16 39 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 40 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 41 H 0.10 0.75 7.45 -51.93 -0.39 0.37 16 42 H 0.11 2.14 8.06 -52.49 -0.42 1.72 16 LS Contribution 362.13 15.07 5.46 5.46 Total: -1.00 -34.59 362.13 -9.07 -43.66 By element: Atomic # 1 Polarization: 12.74 SS G_CDS: -7.67 Total: 5.08 kcal Atomic # 6 Polarization: -11.01 SS G_CDS: -3.34 Total: -14.35 kcal Atomic # 7 Polarization: -36.51 SS G_CDS: 1.17 Total: -35.34 kcal Atomic # 8 Polarization: -21.68 SS G_CDS: 0.18 Total: -21.50 kcal Atomic # 14 Polarization: 21.87 SS G_CDS: -4.86 Total: 17.00 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -34.59 -9.07 -43.66 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000270538121.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.392 kcal (2) G-P(sol) polarization free energy of solvation -34.589 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.197 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.075 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.663 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.272 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds