Wall clock time and date at job start Tue Mar 31 2020 12:11:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31555 * 1 3 3 Si 1.86797 * 120.00375 * 2 1 4 4 H 1.48506 * 109.46953 * 269.99701 * 3 2 1 5 5 H 1.48494 * 109.47187 * 29.99435 * 3 2 1 6 6 H 1.48495 * 109.47353 * 150.00076 * 3 2 1 7 7 C 1.38658 * 119.99612 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00271 * 359.97438 * 7 2 1 9 9 O 1.34828 * 119.99961 * 180.02562 * 7 2 1 10 10 C 1.35751 * 117.00270 * 185.03453 * 9 7 2 11 11 C 1.38898 * 120.06778 * 354.17533 * 10 9 7 12 12 C 1.38080 * 119.93224 * 179.67457 * 11 10 9 13 13 C 1.38324 * 120.06703 * 0.61662 * 12 11 10 14 14 C 1.38274 * 120.13763 * 359.68070 * 13 12 11 15 15 C 1.50705 * 119.96913 * 180.02562 * 14 13 12 16 16 C 1.50698 * 109.46946 * 269.97869 * 15 14 13 17 17 O 1.21279 * 120.00282 * 359.97438 * 16 15 14 18 18 N 1.34777 * 119.99612 * 179.97438 * 16 15 14 19 19 N 1.40103 * 120.00050 * 179.97438 * 18 16 15 20 20 C 1.34777 * 120.00050 * 180.02562 * 19 18 16 21 21 O 1.21279 * 120.00106 * 0.02562 * 20 19 18 22 22 C 1.50702 * 119.99908 * 179.97438 * 20 19 18 23 23 C 1.53777 * 113.61445 * 279.13793 * 22 20 19 24 24 C 1.53947 * 87.02085 * 220.04587 * 23 22 20 25 25 C 1.53779 * 113.61272 * 181.53036 * 22 20 19 26 26 C 1.38123 * 120.07175 * 359.97438 * 14 13 12 27 27 H 0.96999 * 119.99329 * 0.02562 * 1 2 3 28 28 H 1.08010 * 120.03286 * 359.97438 * 11 10 9 29 29 H 1.08001 * 119.96872 * 180.31612 * 12 11 10 30 30 H 1.08001 * 119.93406 * 179.69892 * 13 12 11 31 31 H 1.09006 * 109.46654 * 29.97662 * 15 14 13 32 32 H 1.08999 * 109.47320 * 149.97401 * 15 14 13 33 33 H 0.97004 * 120.00106 * 359.97438 * 18 16 15 34 34 H 0.96996 * 119.99499 * 359.97438 * 19 18 16 35 35 H 1.09004 * 112.84621 * 50.32919 * 22 20 19 36 36 H 1.09008 * 113.61520 * 334.56642 * 23 22 20 37 37 H 1.09005 * 113.61489 * 105.47147 * 23 22 20 38 38 H 1.08993 * 113.54009 * 270.81370 * 24 23 22 39 39 H 1.09005 * 113.66707 * 139.92898 * 24 23 22 40 40 H 1.09003 * 113.61068 * 254.52438 * 25 22 20 41 41 H 1.08997 * 113.61744 * 25.34991 * 25 22 20 42 42 H 1.07998 * 120.03894 * 180.02562 * 26 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3155 0.0000 0.0000 3 14 2.2496 1.6177 0.0000 4 1 2.4972 2.0463 -1.4001 5 1 1.4471 2.6526 0.6999 6 1 3.5472 1.4401 0.7000 7 6 2.0088 -1.2009 0.0005 8 1 1.4687 -2.1362 0.0014 9 8 3.3570 -1.2009 0.0011 10 6 3.9734 -2.4059 -0.1046 11 6 3.2238 -3.5750 -0.0851 12 6 3.8529 -4.7988 -0.1996 13 6 5.2294 -4.8618 -0.3206 14 6 5.9790 -3.6999 -0.3341 15 6 7.4784 -3.7729 -0.4667 16 6 8.1003 -3.8591 0.9033 17 8 7.3954 -3.8605 1.8902 18 7 9.4398 -3.9345 1.0318 19 7 10.0180 -4.0140 2.3054 20 6 11.3575 -4.0889 2.4339 21 8 12.0624 -4.0870 1.4470 22 6 11.9795 -4.1739 3.8039 23 6 12.1028 -2.8133 4.5100 24 6 13.4815 -3.2859 5.0056 25 6 13.5166 -4.2156 3.7811 26 6 5.3549 -2.4724 -0.2272 27 1 -0.4849 0.8401 -0.0004 28 1 2.1493 -3.5267 0.0145 29 1 3.2702 -5.7081 -0.1897 30 1 5.7197 -5.8204 -0.4050 31 1 7.7494 -4.6563 -1.0449 32 1 7.8421 -2.8801 -0.9753 33 1 10.0035 -3.9337 0.2424 34 1 9.4543 -4.0144 3.0947 35 1 11.5307 -4.9491 4.4251 36 1 12.1518 -1.9680 3.8235 37 1 11.3762 -2.6690 5.3097 38 1 13.4436 -3.8174 5.9564 39 1 14.2444 -2.5075 4.9848 40 1 13.9298 -5.2017 3.9933 41 1 13.9528 -3.7557 2.8944 42 1 5.9409 -1.5652 -0.2382 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000270538121.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:11:35 Heat of formation + Delta-G solvation = -46.172495 kcal Electronic energy + Delta-G solvation = -25127.074391 eV Core-core repulsion = 21266.893476 eV Total energy + Delta-G solvation = -3860.180915 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.72044 -41.03809 -40.38179 -38.59887 -38.20056 -36.37206 -34.48602 -33.80936 -32.38669 -31.05807 -28.69494 -27.38940 -27.03084 -26.53235 -23.49320 -22.95998 -22.66958 -21.76992 -20.30307 -19.66933 -19.14802 -18.87064 -18.59883 -17.36331 -16.96910 -16.85305 -16.57977 -16.19143 -16.01541 -15.79492 -15.64435 -15.42613 -15.21331 -14.87816 -14.39933 -14.15847 -13.95435 -13.90549 -13.41936 -13.13119 -13.05510 -12.94463 -12.55107 -12.47243 -12.41925 -12.34722 -12.20702 -11.93634 -11.46160 -11.40662 -11.32030 -11.30380 -10.94253 -10.88978 -9.69266 -9.47666 -9.07119 -8.50283 -6.22901 0.38010 0.69035 0.91921 1.21169 1.29878 1.34373 1.50878 1.66017 2.27520 2.72303 2.95762 3.04180 3.17711 3.43953 3.58580 3.65121 3.76347 3.90398 4.01124 4.07535 4.18653 4.28823 4.40779 4.54344 4.62747 4.67547 4.70753 4.78660 4.85993 4.95414 5.03422 5.10518 5.14574 5.23525 5.39179 5.48768 5.56963 5.63937 5.68619 5.72122 5.76897 5.91582 6.24505 6.45146 6.82046 6.84069 7.28887 7.59008 8.61466 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.017758 B = 0.002401 C = 0.002208 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1576.368062 B =11659.935493 C =12678.549471 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.923 5.923 2 C 0.009 3.991 3 Si 0.971 3.029 4 H -0.263 1.263 5 H -0.267 1.267 6 H -0.266 1.266 7 C -0.399 4.399 8 H 0.080 0.920 9 O -0.247 6.247 10 C 0.117 3.883 11 C -0.238 4.238 12 C -0.078 4.078 13 C -0.168 4.168 14 C -0.029 4.029 15 C -0.079 4.079 16 C 0.519 3.481 17 O -0.567 6.567 18 N -0.524 5.524 19 N -0.522 5.522 20 C 0.522 3.478 21 O -0.575 6.575 22 C -0.128 4.128 23 C -0.128 4.128 24 C -0.132 4.132 25 C -0.120 4.120 26 C -0.179 4.179 27 H 0.285 0.715 28 H 0.107 0.893 29 H 0.141 0.859 30 H 0.150 0.850 31 H 0.150 0.850 32 H 0.134 0.866 33 H 0.439 0.561 34 H 0.435 0.565 35 H 0.144 0.856 36 H 0.073 0.927 37 H 0.092 0.908 38 H 0.102 0.898 39 H 0.076 0.924 40 H 0.085 0.915 41 H 0.076 0.924 42 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 27.884 -10.206 5.767 30.248 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.564 5.564 2 C -0.190 4.190 3 Si 0.794 3.206 4 H -0.188 1.188 5 H -0.192 1.192 6 H -0.191 1.191 7 C -0.475 4.475 8 H 0.098 0.902 9 O -0.155 6.155 10 C 0.069 3.931 11 C -0.257 4.257 12 C -0.096 4.096 13 C -0.186 4.186 14 C -0.030 4.030 15 C -0.120 4.120 16 C 0.307 3.693 17 O -0.443 6.443 18 N -0.273 5.273 19 N -0.269 5.269 20 C 0.310 3.690 21 O -0.453 6.453 22 C -0.150 4.150 23 C -0.165 4.165 24 C -0.169 4.169 25 C -0.158 4.158 26 C -0.198 4.198 27 H 0.094 0.906 28 H 0.125 0.875 29 H 0.158 0.842 30 H 0.168 0.832 31 H 0.168 0.832 32 H 0.152 0.848 33 H 0.283 0.717 34 H 0.278 0.722 35 H 0.161 0.839 36 H 0.092 0.908 37 H 0.111 0.889 38 H 0.121 0.879 39 H 0.095 0.905 40 H 0.103 0.897 41 H 0.094 0.906 42 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges 27.774 -9.868 5.786 30.037 hybrid contribution -0.869 0.688 -0.046 1.109 sum 26.904 -9.180 5.739 29.001 Atomic orbital electron populations 1.69731 1.06849 1.29554 1.50302 1.25287 0.95919 1.02149 0.95612 0.85210 0.78654 0.77415 0.79370 1.18771 1.19157 1.19064 1.20706 0.78126 0.96108 1.52576 0.90232 1.83507 1.21221 1.27397 1.83347 1.19601 0.93141 0.85152 0.95247 1.21342 1.00240 0.93469 1.10652 1.21118 0.95527 0.96264 0.96724 1.21032 0.93192 0.98410 1.05949 1.19100 0.94616 0.91675 0.97629 1.20623 0.89842 1.08923 0.92583 1.21285 0.79841 0.75345 0.92840 1.90786 1.61705 1.50738 1.41115 1.45043 1.05889 1.76158 1.00220 1.45234 1.06399 1.75186 1.00099 1.21507 0.79467 0.74870 0.93118 1.90694 1.61590 1.52039 1.40930 1.22984 0.98264 1.02610 0.91127 1.22941 0.99491 0.94151 0.99963 1.22861 0.96544 0.99341 0.98200 1.22834 0.92042 1.01682 0.99205 1.20292 0.90605 0.99078 1.09833 0.90587 0.87540 0.84165 0.83196 0.83183 0.84830 0.71719 0.72203 0.83862 0.90802 0.88912 0.87905 0.90521 0.89682 0.90581 0.85853 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -56.07 13.96 21.61 0.30 -55.76 16 2 C 0.01 0.50 5.49 84.83 0.47 0.97 16 3 Si 0.97 46.39 28.62 68.60 1.96 48.35 16 4 H -0.26 -11.95 7.11 99.48 0.71 -11.24 16 5 H -0.27 -11.89 7.11 99.48 0.71 -11.18 16 6 H -0.27 -12.81 7.11 99.48 0.71 -12.11 16 7 C -0.40 -24.12 9.95 67.92 0.68 -23.45 16 8 H 0.08 5.04 5.44 -2.91 -0.02 5.03 16 9 O -0.25 -13.85 8.59 -22.74 -0.20 -14.04 16 10 C 0.12 5.69 6.65 22.58 0.15 5.84 16 11 C -0.24 -10.82 9.17 22.39 0.21 -10.62 16 12 C -0.08 -2.76 10.04 22.25 0.22 -2.54 16 13 C -0.17 -4.98 9.70 22.30 0.22 -4.77 16 14 C -0.03 -0.89 4.37 -19.88 -0.09 -0.98 16 15 C -0.08 -1.47 5.83 29.10 0.17 -1.31 16 16 C 0.52 11.86 7.94 87.66 0.70 12.55 16 17 O -0.57 -18.41 15.87 -3.03 -0.05 -18.45 16 18 N -0.52 -9.62 6.26 -173.54 -1.09 -10.71 16 19 N -0.52 -9.34 6.26 -173.53 -1.09 -10.43 16 20 C 0.52 9.19 7.47 87.66 0.65 9.84 16 21 O -0.57 -13.76 15.75 -3.03 -0.05 -13.80 16 22 C -0.13 -1.37 4.14 -11.02 -0.05 -1.41 16 23 C -0.13 -1.21 7.64 31.18 0.24 -0.97 16 24 C -0.13 -0.97 8.09 31.18 0.25 -0.72 16 25 C -0.12 -1.28 7.40 31.12 0.23 -1.05 16 26 C -0.18 -7.01 9.65 22.39 0.22 -6.79 16 27 H 0.28 15.81 8.31 -92.71 -0.77 15.04 16 28 H 0.11 5.32 5.64 -2.91 -0.02 5.30 16 29 H 0.14 4.04 8.06 -2.91 -0.02 4.02 16 30 H 0.15 3.23 8.06 -2.91 -0.02 3.21 16 31 H 0.15 1.57 8.09 -2.38 -0.02 1.55 16 32 H 0.13 1.86 8.08 -2.39 -0.02 1.84 16 33 H 0.44 6.48 8.00 -213.31 -1.71 4.77 16 34 H 0.44 7.31 8.00 -213.32 -1.71 5.60 16 35 H 0.14 0.85 8.14 -2.39 -0.02 0.83 16 36 H 0.07 0.91 8.09 -2.38 -0.02 0.89 16 37 H 0.09 0.66 8.14 -2.38 -0.02 0.64 16 38 H 0.10 0.44 8.14 -2.39 -0.02 0.42 16 39 H 0.08 0.56 8.14 -2.38 -0.02 0.54 16 40 H 0.08 0.72 8.14 -2.39 -0.02 0.70 16 41 H 0.08 1.14 7.45 -2.39 -0.02 1.12 16 42 H 0.12 4.51 8.06 -2.91 -0.02 4.48 16 Total: -1.00 -80.53 362.13 1.72 -78.80 By element: Atomic # 1 Polarization: 23.79 SS G_CDS: -2.34 Total: 21.46 kcal Atomic # 6 Polarization: -29.66 SS G_CDS: 4.26 Total: -25.40 kcal Atomic # 7 Polarization: -75.03 SS G_CDS: -1.87 Total: -76.90 kcal Atomic # 8 Polarization: -46.01 SS G_CDS: -0.29 Total: -46.30 kcal Atomic # 14 Polarization: 46.39 SS G_CDS: 1.96 Total: 48.35 kcal Total: -80.53 1.72 -78.80 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000270538121.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.629 kcal (2) G-P(sol) polarization free energy of solvation -80.526 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.897 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.724 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.802 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.172 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds