Wall clock time and date at job start Tue Mar 31 2020 12:55:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 O 1.21295 * 120.00188 * 2 1 4 4 C 1.46861 * 119.99681 * 179.97438 * 2 1 3 5 5 C 1.40068 * 120.09588 * 353.89210 * 4 2 1 6 6 C 1.36592 * 119.90313 * 179.97438 * 5 4 2 7 7 C 1.39283 * 120.09392 * 359.97438 * 6 5 4 8 8 N 1.39144 * 119.89996 * 180.02562 * 7 6 5 9 9 C 1.34781 * 120.00384 * 34.59724 * 8 7 6 10 10 O 1.21361 * 119.99985 * 5.25167 * 9 8 7 11 11 C 1.49369 * 120.00110 * 185.26085 * 9 8 7 12 12 O 1.21361 * 119.99904 * 359.97438 * 11 9 8 13 13 N 1.34771 * 119.99994 * 179.97438 * 11 9 8 14 14 C 1.46497 * 120.00202 * 179.97438 * 13 11 9 15 15 C 1.53003 * 109.47574 * 180.02562 * 14 13 11 16 16 C 1.50694 * 109.47251 * 180.02562 * 15 14 13 17 17 H 1.08001 * 120.00176 * 359.97438 * 16 15 14 18 18 C 1.37878 * 119.99932 * 180.02562 * 16 15 14 19 19 N 1.31514 * 120.00293 * 179.97438 * 18 16 15 20 20 Si 1.86802 * 120.00077 * 359.97438 * 18 16 15 21 21 H 1.48504 * 109.46949 * 89.99988 * 20 18 16 22 22 H 1.48496 * 109.47416 * 210.00521 * 20 18 16 23 23 H 1.48501 * 109.47085 * 330.00708 * 20 18 16 24 24 C 1.39229 * 120.18985 * 0.02562 * 7 6 5 25 25 C 1.36624 * 120.10351 * 359.71875 * 24 7 6 26 26 C 1.50691 * 120.05533 * 180.29811 * 25 24 7 27 27 H 1.09001 * 109.47355 * 270.00168 * 1 2 3 28 28 H 1.08998 * 109.47437 * 149.99871 * 1 2 3 29 29 H 1.09008 * 109.46847 * 29.99912 * 1 2 3 30 30 H 1.08005 * 120.04972 * 0.02562 * 5 4 2 31 31 H 1.07999 * 119.95290 * 180.02562 * 6 5 4 32 32 H 0.97000 * 120.00067 * 214.58780 * 8 7 6 33 33 H 0.97002 * 120.00235 * 359.97438 * 13 11 9 34 34 H 1.08997 * 109.47099 * 300.00212 * 14 13 11 35 35 H 1.09003 * 109.47187 * 59.99714 * 14 13 11 36 36 H 1.08997 * 109.46956 * 300.00147 * 15 14 13 37 37 H 1.09000 * 109.46729 * 59.99479 * 15 14 13 38 38 H 0.97002 * 120.00558 * 179.97438 * 19 18 16 39 39 H 1.08003 * 119.95181 * 180.02562 * 24 7 6 40 40 H 1.09001 * 109.47083 * 263.46730 * 26 25 24 41 41 H 1.09008 * 109.47255 * 23.46362 * 26 25 24 42 42 H 1.09000 * 109.47366 * 143.46610 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1135 1.0504 0.0000 4 6 2.2412 -1.2719 0.0006 5 6 1.5488 -2.4826 0.1301 6 6 2.2356 -3.6633 0.1296 7 6 3.6224 -3.6645 0.0000 8 7 4.3179 -4.8696 -0.0005 9 6 3.7659 -5.9661 -0.5568 10 8 2.7054 -5.8818 -1.1408 11 6 4.4592 -7.2852 -0.4544 12 8 5.5199 -7.3695 0.1294 13 7 3.9070 -8.3817 -1.0102 14 6 4.5872 -9.6753 -0.9102 15 6 3.7551 -10.7454 -1.6198 16 6 4.4546 -12.0762 -1.5163 17 1 5.3985 -12.1512 -0.9969 18 6 3.8901 -13.1978 -2.0858 19 7 4.5007 -14.3591 -1.9960 20 14 2.2578 -13.0680 -2.9849 21 1 2.5048 -12.7687 -4.4184 22 1 1.5240 -14.3535 -2.8668 23 1 1.4472 -11.9783 -2.3844 24 6 4.3146 -2.4633 -0.1289 25 6 3.6351 -1.2781 -0.1347 26 6 4.3847 0.0209 -0.2811 27 1 -0.3634 0.0000 1.0277 28 1 -0.3634 -0.8899 -0.5138 29 1 -0.3633 0.8901 -0.5139 30 1 0.4733 -2.4826 0.2293 31 1 1.7025 -4.5972 0.2289 32 1 5.2002 -4.9206 0.3994 33 1 3.0590 -8.3145 -1.4765 34 1 5.5681 -9.6073 -1.3805 35 1 4.7056 -9.9434 0.1397 36 1 2.7740 -10.8136 -1.1498 37 1 3.6372 -10.4770 -2.6696 38 1 4.1034 -15.1483 -2.3963 39 1 5.3899 -2.4688 -0.2296 40 1 4.5598 0.4524 0.7045 41 1 5.3405 -0.1644 -0.7715 42 1 3.7964 0.7143 -0.8820 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000273061269.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:55:22 Heat of formation + Delta-G solvation = -82.049056 kcal Electronic energy + Delta-G solvation = -24956.076482 eV Core-core repulsion = 21094.339842 eV Total energy + Delta-G solvation = -3861.736640 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.39878 -40.38332 -39.09341 -38.09676 -35.82646 -34.97018 -33.28635 -32.89429 -31.45989 -30.39643 -29.54378 -27.32204 -26.33808 -24.53997 -23.19858 -22.07452 -20.98892 -20.50867 -20.08691 -18.82663 -17.50455 -17.17108 -16.94391 -16.59013 -16.20982 -15.77628 -15.51551 -15.11122 -14.76470 -14.68674 -14.38772 -14.24079 -13.89248 -13.84012 -13.56766 -13.26142 -13.16666 -12.77692 -12.67476 -12.58836 -12.53026 -12.26072 -11.86916 -11.60434 -11.51518 -11.32375 -10.76420 -10.52155 -10.40201 -10.02695 -9.88695 -9.63685 -9.40882 -9.26552 -8.92704 -8.67205 -8.60087 -6.17405 -4.18694 0.14148 1.00419 1.24963 2.01028 2.17534 3.06589 3.22234 3.30601 3.31323 3.39179 3.50876 3.72104 4.28282 4.32681 4.39853 4.41796 4.64744 4.77830 4.88548 4.94122 5.01401 5.09182 5.15432 5.30093 5.41723 5.45601 5.49090 5.68869 5.79335 5.85868 5.88462 5.95922 6.00514 6.15050 6.32458 6.39112 6.47190 6.67462 6.96298 7.10222 7.18597 7.29976 7.53773 7.59772 8.00151 8.35650 8.85461 9.42118 10.95200 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.028146 B = 0.002091 C = 0.001975 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 994.587268 B =13386.197761 C =14176.405287 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C 0.396 3.604 3 O -0.459 6.459 4 C -0.199 4.199 5 C -0.045 4.045 6 C -0.143 4.143 7 C 0.190 3.810 8 N -0.650 5.650 9 C 0.511 3.489 10 O -0.494 6.494 11 C 0.501 3.499 12 O -0.523 6.523 13 N -0.686 5.686 14 C 0.126 3.874 15 C -0.023 4.023 16 C -0.526 4.526 17 H 0.077 0.923 18 C 0.071 3.929 19 N -0.896 5.896 20 Si 0.881 3.119 21 H -0.276 1.276 22 H -0.286 1.286 23 H -0.265 1.265 24 C -0.161 4.161 25 C -0.001 4.001 26 C -0.122 4.122 27 H 0.097 0.903 28 H 0.086 0.914 29 H 0.087 0.913 30 H 0.138 0.862 31 H 0.141 0.859 32 H 0.426 0.574 33 H 0.410 0.590 34 H 0.071 0.929 35 H 0.072 0.928 36 H 0.025 0.975 37 H 0.021 0.979 38 H 0.266 0.734 39 H 0.135 0.865 40 H 0.078 0.922 41 H 0.061 0.939 42 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.366 28.522 4.664 29.593 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.259 4.259 2 C 0.276 3.724 3 O -0.336 6.336 4 C -0.201 4.201 5 C -0.064 4.064 6 C -0.163 4.163 7 C 0.094 3.906 8 N -0.297 5.297 9 C 0.293 3.707 10 O -0.367 6.367 11 C 0.280 3.720 12 O -0.400 6.400 13 N -0.337 5.337 14 C 0.005 3.995 15 C -0.061 4.061 16 C -0.564 4.564 17 H 0.095 0.905 18 C -0.132 4.132 19 N -0.534 5.534 20 Si 0.708 3.292 21 H -0.201 1.201 22 H -0.212 1.212 23 H -0.190 1.190 24 C -0.181 4.181 25 C -0.002 4.002 26 C -0.178 4.178 27 H 0.115 0.885 28 H 0.105 0.895 29 H 0.106 0.894 30 H 0.155 0.845 31 H 0.159 0.841 32 H 0.265 0.735 33 H 0.245 0.755 34 H 0.089 0.911 35 H 0.090 0.910 36 H 0.043 0.957 37 H 0.039 0.961 38 H 0.076 0.924 39 H 0.153 0.847 40 H 0.096 0.904 41 H 0.080 0.920 42 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -6.047 28.730 4.603 29.718 hybrid contribution -0.821 -0.409 -0.543 1.066 sum -6.868 28.321 4.060 29.423 Atomic orbital electron populations 1.22247 0.93888 1.04975 1.04743 1.22333 0.91562 0.87546 0.70982 1.90504 1.71530 1.34628 1.36979 1.20338 0.93946 0.94972 1.10800 1.21068 1.00170 0.90708 0.94413 1.20898 0.92642 0.99686 1.03076 1.18004 0.91952 0.84908 0.95700 1.43178 1.22048 1.07263 1.57180 1.20707 0.85680 0.85717 0.78579 1.90785 1.21441 1.85573 1.38862 1.19662 0.85928 0.84883 0.81541 1.90782 1.21506 1.85667 1.42069 1.46221 1.25591 1.08536 1.53388 1.21777 0.96673 0.79037 1.02013 1.19828 0.96265 0.94381 0.95653 1.20852 1.08506 0.90196 1.36841 0.90512 1.24991 0.97433 0.95164 0.95603 1.69893 1.39167 0.99454 1.44864 0.86764 0.84193 0.77762 0.80466 1.20140 1.21189 1.18979 1.20589 1.00637 0.90468 1.06429 1.19729 0.92438 0.95451 0.92579 1.21101 0.99359 0.93983 1.03349 0.88474 0.89496 0.89443 0.84463 0.84092 0.73486 0.75453 0.91054 0.91018 0.95681 0.96115 0.92445 0.84704 0.90380 0.91986 0.89012 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -0.97 9.62 36.00 0.35 -0.63 16 2 C 0.40 3.26 7.15 -30.82 -0.22 3.04 16 3 O -0.46 -4.94 14.09 5.54 0.08 -4.87 16 4 C -0.20 -1.73 5.87 -105.05 -0.62 -2.35 16 5 C -0.04 -0.36 9.27 -39.49 -0.37 -0.72 16 6 C -0.14 -1.41 8.58 -39.79 -0.34 -1.75 16 7 C 0.19 1.90 6.25 -83.78 -0.52 1.38 16 8 N -0.65 -6.70 5.29 -10.28 -0.05 -6.75 16 9 C 0.51 6.53 7.60 -11.62 -0.09 6.44 16 10 O -0.49 -6.97 14.22 5.49 0.08 -6.89 16 11 C 0.50 7.47 7.89 -11.63 -0.09 7.38 16 12 O -0.52 -8.82 16.48 5.49 0.09 -8.73 16 13 N -0.69 -10.78 5.55 -60.76 -0.34 -11.12 16 14 C 0.13 2.38 5.61 -4.04 -0.02 2.35 16 15 C -0.02 -0.51 4.16 -27.88 -0.12 -0.63 16 16 C -0.53 -14.18 9.66 -34.44 -0.33 -14.52 16 17 H 0.08 2.23 7.99 -52.49 -0.42 1.81 16 18 C 0.07 1.97 5.47 -17.82 -0.10 1.87 16 19 N -0.90 -26.64 13.96 55.43 0.77 -25.87 16 20 Si 0.88 20.62 27.47 -169.99 -4.67 15.95 16 21 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 22 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 23 H -0.27 -5.87 6.54 56.52 0.37 -5.50 16 24 C -0.16 -1.41 9.52 -39.80 -0.38 -1.79 16 25 C 0.00 -0.01 5.89 -104.53 -0.62 -0.62 16 26 C -0.12 -0.99 8.71 36.00 0.31 -0.67 16 27 H 0.10 0.34 8.14 -51.93 -0.42 -0.08 16 28 H 0.09 0.30 6.72 -51.93 -0.35 -0.05 16 29 H 0.09 0.40 8.14 -51.92 -0.42 -0.02 16 30 H 0.14 0.70 6.52 -52.48 -0.34 0.36 16 31 H 0.14 1.48 6.48 -52.49 -0.34 1.14 16 32 H 0.43 3.70 8.29 -40.82 -0.34 3.36 16 33 H 0.41 5.88 7.94 -40.82 -0.32 5.55 16 34 H 0.07 1.38 8.14 -51.93 -0.42 0.96 16 35 H 0.07 1.39 8.14 -51.93 -0.42 0.97 16 36 H 0.02 0.54 7.20 -51.93 -0.37 0.16 16 37 H 0.02 0.44 7.57 -51.93 -0.39 0.05 16 38 H 0.27 7.38 8.31 -40.82 -0.34 7.04 16 39 H 0.14 0.92 8.05 -52.48 -0.42 0.50 16 40 H 0.08 0.62 8.14 -51.93 -0.42 0.19 16 41 H 0.06 0.41 8.03 -51.92 -0.42 -0.01 16 42 H 0.09 0.85 5.88 -51.93 -0.31 0.54 16 LS Contribution 358.74 15.07 5.41 5.41 Total: -1.00 -32.27 358.74 -7.09 -39.36 By element: Atomic # 1 Polarization: 10.04 SS G_CDS: -5.31 Total: 4.73 kcal Atomic # 6 Polarization: 1.93 SS G_CDS: -3.15 Total: -1.22 kcal Atomic # 7 Polarization: -44.12 SS G_CDS: 0.38 Total: -43.74 kcal Atomic # 8 Polarization: -20.73 SS G_CDS: 0.25 Total: -20.49 kcal Atomic # 14 Polarization: 20.62 SS G_CDS: -4.67 Total: 15.95 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -32.27 -7.09 -39.36 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273061269.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.685 kcal (2) G-P(sol) polarization free energy of solvation -32.273 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.959 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.090 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.364 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.049 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds