Wall clock time and date at job start Tue Mar 31 2020 12:55:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 O 1.21295 * 120.00188 * 2 1 4 4 C 1.46861 * 119.99681 * 179.97438 * 2 1 3 5 5 C 1.40068 * 120.09588 * 353.89210 * 4 2 1 6 6 C 1.36592 * 119.90313 * 179.97438 * 5 4 2 7 7 C 1.39283 * 120.09392 * 359.97438 * 6 5 4 8 8 N 1.39144 * 119.89996 * 180.02562 * 7 6 5 9 9 C 1.34781 * 120.00384 * 34.59724 * 8 7 6 10 10 O 1.21361 * 119.99985 * 5.25167 * 9 8 7 11 11 C 1.49369 * 120.00110 * 185.26085 * 9 8 7 12 12 O 1.21361 * 119.99904 * 359.97438 * 11 9 8 13 13 N 1.34771 * 119.99994 * 179.97438 * 11 9 8 14 14 C 1.46497 * 120.00202 * 179.97438 * 13 11 9 15 15 C 1.53003 * 109.47574 * 180.02562 * 14 13 11 16 16 C 1.50694 * 109.47251 * 180.02562 * 15 14 13 17 17 H 1.08001 * 120.00176 * 359.97438 * 16 15 14 18 18 C 1.37878 * 119.99932 * 180.02562 * 16 15 14 19 19 N 1.31514 * 120.00293 * 179.97438 * 18 16 15 20 20 Si 1.86802 * 120.00077 * 359.97438 * 18 16 15 21 21 H 1.48504 * 109.46949 * 89.99988 * 20 18 16 22 22 H 1.48496 * 109.47416 * 210.00521 * 20 18 16 23 23 H 1.48501 * 109.47085 * 330.00708 * 20 18 16 24 24 C 1.39229 * 120.18985 * 0.02562 * 7 6 5 25 25 C 1.36624 * 120.10351 * 359.71875 * 24 7 6 26 26 C 1.50691 * 120.05533 * 180.29811 * 25 24 7 27 27 H 1.09001 * 109.47355 * 270.00168 * 1 2 3 28 28 H 1.08998 * 109.47437 * 149.99871 * 1 2 3 29 29 H 1.09008 * 109.46847 * 29.99912 * 1 2 3 30 30 H 1.08005 * 120.04972 * 0.02562 * 5 4 2 31 31 H 1.07999 * 119.95290 * 180.02562 * 6 5 4 32 32 H 0.97000 * 120.00067 * 214.58780 * 8 7 6 33 33 H 0.97002 * 120.00235 * 359.97438 * 13 11 9 34 34 H 1.08997 * 109.47099 * 300.00212 * 14 13 11 35 35 H 1.09003 * 109.47187 * 59.99714 * 14 13 11 36 36 H 1.08997 * 109.46956 * 300.00147 * 15 14 13 37 37 H 1.09000 * 109.46729 * 59.99479 * 15 14 13 38 38 H 0.97002 * 120.00558 * 179.97438 * 19 18 16 39 39 H 1.08003 * 119.95181 * 180.02562 * 24 7 6 40 40 H 1.09001 * 109.47083 * 263.46730 * 26 25 24 41 41 H 1.09008 * 109.47255 * 23.46362 * 26 25 24 42 42 H 1.09000 * 109.47366 * 143.46610 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1135 1.0504 0.0000 4 6 2.2412 -1.2719 0.0006 5 6 1.5488 -2.4826 0.1301 6 6 2.2356 -3.6633 0.1296 7 6 3.6224 -3.6645 0.0000 8 7 4.3179 -4.8696 -0.0005 9 6 3.7659 -5.9661 -0.5568 10 8 2.7054 -5.8818 -1.1408 11 6 4.4592 -7.2852 -0.4544 12 8 5.5199 -7.3695 0.1294 13 7 3.9070 -8.3817 -1.0102 14 6 4.5872 -9.6753 -0.9102 15 6 3.7551 -10.7454 -1.6198 16 6 4.4546 -12.0762 -1.5163 17 1 5.3985 -12.1512 -0.9969 18 6 3.8901 -13.1978 -2.0858 19 7 4.5007 -14.3591 -1.9960 20 14 2.2578 -13.0680 -2.9849 21 1 2.5048 -12.7687 -4.4184 22 1 1.5240 -14.3535 -2.8668 23 1 1.4472 -11.9783 -2.3844 24 6 4.3146 -2.4633 -0.1289 25 6 3.6351 -1.2781 -0.1347 26 6 4.3847 0.0209 -0.2811 27 1 -0.3634 0.0000 1.0277 28 1 -0.3634 -0.8899 -0.5138 29 1 -0.3633 0.8901 -0.5139 30 1 0.4733 -2.4826 0.2293 31 1 1.7025 -4.5972 0.2289 32 1 5.2002 -4.9206 0.3994 33 1 3.0590 -8.3145 -1.4765 34 1 5.5681 -9.6073 -1.3805 35 1 4.7056 -9.9434 0.1397 36 1 2.7740 -10.8136 -1.1498 37 1 3.6372 -10.4770 -2.6696 38 1 4.1034 -15.1483 -2.3963 39 1 5.3899 -2.4688 -0.2296 40 1 4.5598 0.4524 0.7045 41 1 5.3405 -0.1644 -0.7715 42 1 3.7964 0.7143 -0.8820 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000273061269.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:55:22 Heat of formation + Delta-G solvation = -104.300037 kcal Electronic energy + Delta-G solvation = -24957.041357 eV Core-core repulsion = 21094.339842 eV Total energy + Delta-G solvation = -3862.701515 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -42.32677 -41.19706 -40.11423 -38.96990 -37.06257 -36.11225 -34.80334 -33.91989 -32.20509 -32.07671 -30.14723 -28.00037 -27.71384 -25.83590 -24.03246 -23.07691 -22.56188 -21.39637 -20.86812 -19.93828 -19.03082 -18.32816 -17.86716 -17.50349 -17.30145 -16.78267 -16.35694 -16.21798 -16.09493 -15.83468 -15.44914 -15.16683 -15.11117 -14.76662 -14.59965 -14.40459 -14.20585 -13.85449 -13.41780 -13.39470 -13.13749 -13.07536 -13.01773 -12.93894 -12.79614 -12.26756 -12.21636 -12.18103 -11.78091 -11.55816 -11.50188 -10.87598 -10.79029 -10.46810 -10.29786 -9.93542 -9.36150 -8.29935 -6.36899 -0.59425 0.22381 0.33634 1.07465 1.38667 1.40268 1.41747 1.52701 1.97919 2.36519 2.46033 2.70113 3.05366 3.16137 3.24482 3.68006 3.76259 4.08635 4.16169 4.24788 4.25986 4.34120 4.38604 4.59442 4.67769 4.70544 4.72204 4.77971 4.82071 4.93895 4.97445 5.06342 5.15177 5.23557 5.27050 5.28817 5.37144 5.51310 5.58235 5.71835 5.84037 6.17709 6.23994 6.53251 6.58624 6.70381 6.80759 7.27744 8.86177 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.028146 B = 0.002091 C = 0.001975 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 994.587268 B =13386.197761 C =14176.405287 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C 0.394 3.606 3 O -0.491 6.491 4 C -0.206 4.206 5 C -0.036 4.036 6 C -0.155 4.155 7 C 0.171 3.829 8 N -0.636 5.636 9 C 0.521 3.479 10 O -0.507 6.507 11 C 0.505 3.495 12 O -0.544 6.544 13 N -0.683 5.683 14 C 0.141 3.859 15 C -0.018 4.018 16 C -0.536 4.536 17 H 0.036 0.964 18 C 0.006 3.994 19 N -0.948 5.948 20 Si 0.953 3.047 21 H -0.267 1.267 22 H -0.287 1.287 23 H -0.239 1.239 24 C -0.157 4.157 25 C -0.015 4.015 26 C -0.118 4.118 27 H 0.115 0.885 28 H 0.104 0.896 29 H 0.089 0.911 30 H 0.168 0.832 31 H 0.135 0.865 32 H 0.433 0.567 33 H 0.419 0.581 34 H 0.061 0.939 35 H 0.062 0.938 36 H 0.037 0.963 37 H 0.035 0.965 38 H 0.268 0.732 39 H 0.152 0.848 40 H 0.077 0.923 41 H 0.075 0.925 42 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.632 30.546 4.239 32.024 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.254 4.254 2 C 0.276 3.724 3 O -0.370 6.370 4 C -0.207 4.207 5 C -0.055 4.055 6 C -0.175 4.175 7 C 0.077 3.923 8 N -0.283 5.283 9 C 0.303 3.697 10 O -0.381 6.381 11 C 0.285 3.715 12 O -0.422 6.422 13 N -0.335 5.335 14 C 0.019 3.981 15 C -0.055 4.055 16 C -0.574 4.574 17 H 0.054 0.946 18 C -0.191 4.191 19 N -0.588 5.588 20 Si 0.776 3.224 21 H -0.192 1.192 22 H -0.213 1.213 23 H -0.162 1.162 24 C -0.177 4.177 25 C -0.016 4.016 26 C -0.174 4.174 27 H 0.133 0.867 28 H 0.123 0.877 29 H 0.108 0.892 30 H 0.185 0.815 31 H 0.153 0.847 32 H 0.274 0.726 33 H 0.257 0.743 34 H 0.079 0.921 35 H 0.080 0.920 36 H 0.055 0.945 37 H 0.053 0.947 38 H 0.077 0.923 39 H 0.170 0.830 40 H 0.096 0.904 41 H 0.094 0.906 42 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -8.316 30.806 4.194 32.183 hybrid contribution -0.023 -0.964 -0.335 1.021 sum -8.339 29.841 3.859 31.224 Atomic orbital electron populations 1.22282 0.90988 1.06013 1.06149 1.22811 0.93134 0.86749 0.69697 1.90503 1.72475 1.35477 1.38535 1.20607 0.94114 0.95691 1.10326 1.21332 1.01612 0.89582 0.92925 1.20996 0.92707 1.00131 1.03701 1.18158 0.92292 0.84788 0.97098 1.43027 1.22181 1.06799 1.56280 1.20104 0.85347 0.85272 0.78997 1.90786 1.21866 1.85589 1.39827 1.19973 0.85508 0.85465 0.80505 1.90776 1.22499 1.86142 1.42769 1.45954 1.25892 1.07689 1.53968 1.21318 0.95964 0.79957 1.00900 1.19698 0.96444 0.92492 0.96915 1.21199 1.07456 0.92936 1.35826 0.94581 1.26013 1.01851 0.94581 0.96703 1.70058 1.41498 1.00540 1.46657 0.85621 0.79068 0.78427 0.79297 1.19186 1.21316 1.16165 1.20731 1.01532 0.89847 1.05587 1.19968 0.93023 0.95801 0.92814 1.21051 0.99733 0.93351 1.03228 0.86681 0.87706 0.89179 0.81451 0.84744 0.72637 0.74341 0.92056 0.91989 0.94458 0.94684 0.92349 0.83020 0.90442 0.90589 0.90252 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.36 9.62 71.24 0.69 -0.67 16 2 C 0.39 5.83 7.15 27.94 0.20 6.03 16 3 O -0.49 -10.20 14.09 -3.08 -0.04 -10.24 16 4 C -0.21 -3.21 5.87 -20.14 -0.12 -3.33 16 5 C -0.04 -0.49 9.27 22.33 0.21 -0.28 16 6 C -0.16 -2.77 8.58 22.14 0.19 -2.58 16 7 C 0.17 3.15 6.25 38.47 0.24 3.39 16 8 N -0.64 -12.15 5.29 -304.78 -1.61 -13.77 16 9 C 0.52 12.52 7.60 87.24 0.66 13.18 16 10 O -0.51 -13.37 14.22 -3.28 -0.05 -13.42 16 11 C 0.51 14.47 7.89 87.24 0.69 15.16 16 12 O -0.54 -17.95 16.48 -3.28 -0.05 -18.00 16 13 N -0.68 -20.48 5.55 -464.50 -2.58 -23.06 16 14 C 0.14 5.25 5.61 86.38 0.48 5.74 16 15 C -0.02 -0.75 4.16 29.85 0.12 -0.63 16 16 C -0.54 -29.35 9.66 25.60 0.25 -29.11 16 17 H 0.04 2.20 7.99 -2.91 -0.02 2.17 16 18 C 0.01 0.34 5.47 84.65 0.46 0.80 16 19 N -0.95 -57.77 13.96 21.45 0.30 -57.47 16 20 Si 0.95 41.66 27.47 68.60 1.88 43.54 16 21 H -0.27 -11.24 7.11 99.48 0.71 -10.53 16 22 H -0.29 -12.54 7.11 99.48 0.71 -11.83 16 23 H -0.24 -9.33 6.54 99.48 0.65 -8.68 16 24 C -0.16 -2.49 9.52 22.13 0.21 -2.28 16 25 C -0.02 -0.25 5.89 -19.81 -0.12 -0.37 16 26 C -0.12 -1.79 8.71 71.23 0.62 -1.17 16 27 H 0.12 0.42 8.14 -2.39 -0.02 0.40 16 28 H 0.10 0.35 6.72 -2.39 -0.02 0.33 16 29 H 0.09 0.62 8.14 -2.38 -0.02 0.60 16 30 H 0.17 1.12 6.52 -2.91 -0.02 1.10 16 31 H 0.13 2.59 6.48 -2.91 -0.02 2.57 16 32 H 0.43 6.92 8.29 -92.71 -0.77 6.15 16 33 H 0.42 11.10 7.94 -92.71 -0.74 10.36 16 34 H 0.06 2.39 8.14 -2.39 -0.02 2.37 16 35 H 0.06 2.41 8.14 -2.39 -0.02 2.39 16 36 H 0.04 1.51 7.20 -2.39 -0.02 1.49 16 37 H 0.03 1.40 7.57 -2.39 -0.02 1.38 16 38 H 0.27 15.21 8.31 -92.71 -0.77 14.44 16 39 H 0.15 1.78 8.05 -2.91 -0.02 1.75 16 40 H 0.08 1.17 8.14 -2.39 -0.02 1.15 16 41 H 0.08 0.90 8.03 -2.38 -0.02 0.88 16 42 H 0.08 1.44 5.88 -2.39 -0.01 1.42 16 Total: -1.00 -70.78 358.74 2.16 -68.62 By element: Atomic # 1 Polarization: 20.40 SS G_CDS: -0.48 Total: 19.92 kcal Atomic # 6 Polarization: -0.90 SS G_CDS: 4.79 Total: 3.89 kcal Atomic # 7 Polarization: -90.41 SS G_CDS: -3.89 Total: -94.30 kcal Atomic # 8 Polarization: -41.52 SS G_CDS: -0.14 Total: -41.67 kcal Atomic # 14 Polarization: 41.66 SS G_CDS: 1.88 Total: 43.54 kcal Total: -70.78 2.16 -68.62 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273061269.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.683 kcal (2) G-P(sol) polarization free energy of solvation -70.778 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.461 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.161 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.617 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.300 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds