Wall clock time and date at job start Tue Mar 31 2020 12:37:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31323 * 1 3 3 Si 1.86804 * 120.00228 * 2 1 4 4 H 1.48500 * 109.47018 * 275.79701 * 3 2 1 5 5 H 1.48506 * 109.47061 * 35.79430 * 3 2 1 6 6 H 1.48500 * 109.47176 * 155.79531 * 3 2 1 7 7 C 1.39104 * 120.00086 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99757 * 342.19392 * 7 2 1 9 9 N 1.36794 * 120.00018 * 162.18685 * 7 2 1 10 10 C 1.34774 * 120.00306 * 317.02446 * 9 7 2 11 11 O 1.21559 * 119.99986 * 4.09876 * 10 9 7 12 12 C 1.48008 * 120.00324 * 184.09517 * 10 9 7 13 13 C 1.40055 * 120.89858 * 138.59037 * 12 10 9 14 14 C 1.37934 * 119.12590 * 180.02562 * 13 12 10 15 15 N 1.31940 * 120.98373 * 359.75184 * 14 13 12 16 16 C 1.32197 * 121.98129 * 0.52203 * 15 14 13 17 17 O 1.35690 * 119.61082 * 179.75536 * 16 15 14 18 18 C 1.42902 * 117.00450 * 359.72310 * 17 16 15 19 19 H 1.09005 * 110.45502 * 328.85101 * 18 17 16 20 20 C 1.54505 * 110.63054 * 206.16876 * 18 17 16 21 21 C 1.54484 * 104.06120 * 241.29714 * 20 18 17 22 22 O 1.44691 * 104.83967 * 23.97995 * 21 20 18 23 23 C 1.44428 * 105.13778 * 319.51607 * 22 21 20 24 24 C 1.38840 * 120.76854 * 359.47472 * 16 15 14 25 25 C 1.46499 * 119.99895 * 137.02453 * 9 7 2 26 26 C 1.52995 * 117.49932 * 2.78610 * 25 9 7 27 27 C 1.52997 * 117.50163 * 294.12740 * 25 9 7 28 28 H 0.97008 * 120.00018 * 0.02562 * 1 2 3 29 29 H 1.08007 * 120.43745 * 0.02562 * 13 12 10 30 30 H 1.08001 * 119.50912 * 180.02562 * 14 13 12 31 31 H 1.09002 * 110.51200 * 359.93811 * 20 18 17 32 32 H 1.08998 * 110.51596 * 122.65353 * 20 18 17 33 33 H 1.08997 * 110.37181 * 142.80950 * 21 20 18 34 34 H 1.08999 * 110.37259 * 265.03235 * 21 20 18 35 35 H 1.08998 * 110.37301 * 281.61474 * 23 22 21 36 36 H 1.08999 * 110.37233 * 159.38193 * 23 22 21 37 37 H 1.08003 * 120.53426 * 180.23161 * 24 16 15 38 38 H 1.09002 * 115.54943 * 148.45725 * 25 9 7 39 39 H 1.09003 * 117.49930 * 0.02562 * 26 25 9 40 40 H 1.09011 * 117.49917 * 145.01698 * 26 25 9 41 41 H 1.08996 * 117.49991 * 214.98231 * 27 25 9 42 42 H 1.09007 * 117.49539 * 359.97339 * 27 25 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3132 0.0000 0.0000 3 14 2.2473 1.6177 0.0000 4 1 2.3724 2.1171 -1.3929 5 1 1.5113 2.6143 0.8189 6 1 3.6007 1.4079 0.5740 7 6 2.0088 -1.2047 0.0005 8 1 1.5075 -2.1175 0.2870 9 7 3.3275 -1.2332 -0.3619 10 6 3.7487 -0.5257 -1.4288 11 8 2.9727 0.1961 -2.0242 12 6 5.1561 -0.6274 -1.8756 13 6 5.4749 -0.6990 -3.2375 14 6 6.7988 -0.7935 -3.6130 15 7 7.7611 -0.8121 -2.7105 16 6 7.5070 -0.7521 -1.4146 17 8 8.5338 -0.7797 -0.5280 18 6 9.8536 -0.8804 -1.0667 19 1 9.8426 -1.4455 -1.9987 20 6 10.8094 -1.5379 -0.0462 21 6 11.8748 -0.4522 0.2237 22 8 11.2206 0.7973 -0.0990 23 6 10.4545 0.5247 -1.2927 24 6 6.2020 -0.6552 -0.9505 25 6 4.2821 -2.0329 0.4099 26 6 3.7315 -2.8649 1.5698 27 6 4.5561 -1.6069 1.8535 28 1 -0.4850 0.8401 -0.0004 29 1 4.6945 -0.6805 -3.9839 30 1 7.0517 -0.8487 -4.6615 31 1 10.2762 -1.7861 0.8715 32 1 11.2709 -2.4280 -0.4736 33 1 12.1721 -0.4647 1.2723 34 1 12.7427 -0.6045 -0.4178 35 1 11.1038 0.5233 -2.1682 36 1 9.6608 1.2624 -1.4109 37 1 5.9990 -0.6027 0.1090 38 1 5.1136 -2.4498 -0.1583 39 1 2.6590 -2.8176 1.7585 40 1 4.2011 -3.8291 1.7650 41 1 5.5678 -1.7438 2.2353 42 1 4.0264 -0.7313 2.2291 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000273283930.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:37:05 Heat of formation + Delta-G solvation = -21.279511 kcal Electronic energy + Delta-G solvation = -27211.367083 eV Core-core repulsion = 23352.265608 eV Total energy + Delta-G solvation = -3859.101474 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -40.84327 -39.77207 -38.82089 -37.23374 -36.49722 -33.15285 -32.52317 -31.96774 -31.38792 -30.16005 -28.90300 -25.89016 -24.08987 -23.56938 -22.80429 -22.06082 -21.75887 -21.02278 -19.83688 -18.52561 -17.10429 -17.07250 -16.63992 -16.13660 -15.96289 -15.70517 -15.45156 -15.26026 -15.04003 -14.36195 -14.12597 -13.79187 -13.54736 -13.44256 -13.13484 -13.07727 -12.66673 -12.51521 -12.37507 -11.86022 -11.75830 -11.73198 -11.25301 -11.20259 -11.07032 -10.79871 -10.40470 -10.20285 -10.14424 -10.02571 -9.90620 -9.65213 -9.43935 -8.73019 -8.63570 -8.39107 -7.66527 -6.35061 -4.12665 1.10398 1.31403 2.86386 3.20825 3.43334 3.58487 3.64641 3.68576 3.92808 4.14934 4.24628 4.30867 4.38399 4.52622 4.57402 4.73989 4.78493 4.91336 5.03951 5.15826 5.22135 5.23329 5.30272 5.34767 5.38313 5.42006 5.45985 5.52041 5.62390 5.64695 5.67881 5.82501 5.98351 6.11012 6.21313 6.38647 6.46161 6.53980 6.59727 6.77687 7.28173 7.65539 7.80310 7.88971 8.56678 8.69007 9.22362 9.58987 10.67375 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.017880 B = 0.004038 C = 0.003803 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1565.644814 B = 6932.626145 C = 7361.761029 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.853 5.853 2 C 0.093 3.907 3 Si 0.919 3.081 4 H -0.253 1.253 5 H -0.309 1.309 6 H -0.280 1.280 7 C -0.346 4.346 8 H 0.103 0.897 9 N -0.412 5.412 10 C 0.475 3.525 11 O -0.533 6.533 12 C -0.019 4.019 13 C -0.167 4.167 14 C 0.131 3.869 15 N -0.544 5.544 16 C 0.311 3.689 17 O -0.292 6.292 18 C 0.060 3.940 19 H 0.104 0.896 20 C -0.154 4.154 21 C 0.045 3.955 22 O -0.371 6.371 23 C 0.032 3.968 24 C -0.174 4.174 25 C 0.054 3.946 26 C -0.169 4.169 27 C -0.197 4.197 28 H 0.276 0.724 29 H 0.144 0.856 30 H 0.161 0.839 31 H 0.092 0.908 32 H 0.090 0.910 33 H 0.095 0.905 34 H 0.062 0.938 35 H 0.073 0.927 36 H 0.097 0.903 37 H 0.151 0.849 38 H 0.115 0.885 39 H 0.112 0.888 40 H 0.089 0.911 41 H 0.091 0.909 42 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.831 -4.713 -1.437 21.405 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.487 5.487 2 C -0.119 4.119 3 Si 0.751 3.249 4 H -0.179 1.179 5 H -0.239 1.239 6 H -0.206 1.206 7 C -0.471 4.471 8 H 0.120 0.880 9 N -0.130 5.130 10 C 0.266 3.734 11 O -0.417 6.417 12 C -0.030 4.030 13 C -0.189 4.189 14 C -0.024 4.024 15 N -0.269 5.269 16 C 0.133 3.867 17 O -0.200 6.200 18 C 0.003 3.997 19 H 0.122 0.878 20 C -0.192 4.192 21 C -0.032 4.032 22 O -0.290 6.290 23 C -0.045 4.045 24 C -0.195 4.195 25 C -0.052 4.052 26 C -0.207 4.207 27 C -0.236 4.236 28 H 0.086 0.914 29 H 0.162 0.838 30 H 0.179 0.821 31 H 0.111 0.889 32 H 0.109 0.891 33 H 0.113 0.887 34 H 0.080 0.920 35 H 0.091 0.909 36 H 0.115 0.885 37 H 0.169 0.831 38 H 0.133 0.867 39 H 0.131 0.869 40 H 0.108 0.892 41 H 0.109 0.891 42 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 21.100 -4.134 -1.583 21.559 hybrid contribution -0.391 0.600 0.050 0.718 sum 20.709 -3.534 -1.533 21.065 Atomic orbital electron populations 1.69683 1.06954 1.28729 1.43325 1.25415 0.95022 0.99782 0.91640 0.86172 0.78920 0.81584 0.78248 1.17914 1.23910 1.20588 1.18866 0.82541 0.96192 1.49541 0.87971 1.43012 1.07672 1.40718 1.21575 1.18032 0.86344 0.86859 0.82152 1.90614 1.54475 1.39940 1.56678 1.20587 0.94686 0.94080 0.93640 1.22057 0.98020 1.03109 0.95676 1.22243 0.87697 0.94302 0.98120 1.67047 1.38575 1.20006 1.01244 1.19604 0.86940 0.93548 0.86627 1.86362 1.13730 1.87454 1.32408 1.23666 0.80526 0.97135 0.98405 0.87801 1.23108 0.96254 0.99082 1.00757 1.23474 0.94701 0.83171 1.01860 1.89236 1.64256 1.31392 1.44094 1.23873 0.95494 0.96774 0.88359 1.21557 0.89176 1.06472 1.02300 1.22035 0.95694 0.99945 0.87498 1.23189 1.01808 0.94137 1.01533 1.23348 1.00597 0.99972 0.99677 0.91377 0.83803 0.82143 0.88919 0.89127 0.88670 0.91960 0.90909 0.88523 0.83125 0.86710 0.86933 0.89243 0.89056 0.88318 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -25.31 13.95 55.50 0.77 -24.54 16 2 C 0.09 2.66 4.90 -17.45 -0.09 2.58 16 3 Si 0.92 24.54 24.59 -169.99 -4.18 20.36 16 4 H -0.25 -7.12 6.26 56.52 0.35 -6.77 16 5 H -0.31 -8.05 7.11 56.52 0.40 -7.65 16 6 H -0.28 -7.27 7.11 56.52 0.40 -6.87 16 7 C -0.35 -9.40 8.64 -15.02 -0.13 -9.53 16 8 H 0.10 2.86 7.09 -52.48 -0.37 2.49 16 9 N -0.41 -9.79 2.49 -108.75 -0.27 -10.06 16 10 C 0.47 11.45 5.73 -12.26 -0.07 11.38 16 11 O -0.53 -14.78 11.99 5.31 0.06 -14.71 16 12 C -0.02 -0.36 5.27 -104.68 -0.55 -0.92 16 13 C -0.17 -2.74 9.78 -39.01 -0.38 -3.13 16 14 C 0.13 1.77 11.16 -17.62 -0.20 1.57 16 15 N -0.54 -7.84 8.66 -13.39 -0.12 -7.96 16 16 C 0.31 4.87 7.48 -17.17 -0.13 4.75 16 17 O -0.29 -4.20 9.76 -18.77 -0.18 -4.38 16 18 C 0.06 0.67 3.32 -25.16 -0.08 0.58 16 19 H 0.10 1.11 7.09 -51.93 -0.37 0.74 16 20 C -0.15 -1.31 6.90 -25.16 -0.17 -1.48 16 21 C 0.04 0.37 7.63 37.94 0.29 0.66 16 22 O -0.37 -4.54 11.67 -35.23 -0.41 -4.95 16 23 C 0.03 0.36 7.37 37.94 0.28 0.64 16 24 C -0.17 -3.05 7.59 -38.83 -0.29 -3.34 16 25 C 0.05 1.01 4.39 -67.93 -0.30 0.71 16 26 C -0.17 -2.85 9.80 -26.70 -0.26 -3.11 16 27 C -0.20 -3.35 9.41 -26.70 -0.25 -3.60 16 28 H 0.28 7.72 8.31 -40.82 -0.34 7.38 16 29 H 0.14 2.27 8.06 -52.48 -0.42 1.84 16 30 H 0.16 1.55 8.06 -52.49 -0.42 1.13 16 31 H 0.09 0.83 8.00 -51.93 -0.42 0.42 16 32 H 0.09 0.56 8.14 -51.93 -0.42 0.14 16 33 H 0.10 0.67 8.14 -51.93 -0.42 0.24 16 34 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 35 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 36 H 0.10 1.22 8.09 -51.93 -0.42 0.80 16 37 H 0.15 2.66 5.54 -52.48 -0.29 2.37 16 38 H 0.12 1.95 6.13 -51.93 -0.32 1.63 16 39 H 0.11 2.13 6.55 -51.93 -0.34 1.79 16 40 H 0.09 1.22 8.14 -51.92 -0.42 0.80 16 41 H 0.09 1.28 8.14 -51.93 -0.42 0.86 16 42 H 0.10 1.89 8.14 -51.92 -0.42 1.46 16 LS Contribution 342.90 15.07 5.17 5.17 Total: -1.00 -33.25 342.90 -7.01 -40.26 By element: Atomic # 1 Polarization: 8.56 SS G_CDS: -5.51 Total: 3.05 kcal Atomic # 6 Polarization: 0.11 SS G_CDS: -2.34 Total: -2.23 kcal Atomic # 7 Polarization: -42.95 SS G_CDS: 0.39 Total: -42.56 kcal Atomic # 8 Polarization: -23.51 SS G_CDS: -0.53 Total: -24.04 kcal Atomic # 14 Polarization: 24.54 SS G_CDS: -4.18 Total: 20.36 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -33.25 -7.01 -40.26 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273283930.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.977 kcal (2) G-P(sol) polarization free energy of solvation -33.250 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.273 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.006 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.257 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.280 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds