Wall clock time and date at job start Tue Mar 31 2020 12:37:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31323 * 1 3 3 Si 1.86804 * 120.00228 * 2 1 4 4 H 1.48500 * 109.47018 * 275.79701 * 3 2 1 5 5 H 1.48506 * 109.47061 * 35.79430 * 3 2 1 6 6 H 1.48500 * 109.47176 * 155.79531 * 3 2 1 7 7 C 1.39104 * 120.00086 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99757 * 342.19392 * 7 2 1 9 9 N 1.36794 * 120.00018 * 162.18685 * 7 2 1 10 10 C 1.34774 * 120.00306 * 317.02446 * 9 7 2 11 11 O 1.21559 * 119.99986 * 4.09876 * 10 9 7 12 12 C 1.48008 * 120.00324 * 184.09517 * 10 9 7 13 13 C 1.40055 * 120.89858 * 138.59037 * 12 10 9 14 14 C 1.37934 * 119.12590 * 180.02562 * 13 12 10 15 15 N 1.31940 * 120.98373 * 359.75184 * 14 13 12 16 16 C 1.32197 * 121.98129 * 0.52203 * 15 14 13 17 17 O 1.35690 * 119.61082 * 179.75536 * 16 15 14 18 18 C 1.42902 * 117.00450 * 359.72310 * 17 16 15 19 19 H 1.09005 * 110.45502 * 328.85101 * 18 17 16 20 20 C 1.54505 * 110.63054 * 206.16876 * 18 17 16 21 21 C 1.54484 * 104.06120 * 241.29714 * 20 18 17 22 22 O 1.44691 * 104.83967 * 23.97995 * 21 20 18 23 23 C 1.44428 * 105.13778 * 319.51607 * 22 21 20 24 24 C 1.38840 * 120.76854 * 359.47472 * 16 15 14 25 25 C 1.46499 * 119.99895 * 137.02453 * 9 7 2 26 26 C 1.52995 * 117.49932 * 2.78610 * 25 9 7 27 27 C 1.52997 * 117.50163 * 294.12740 * 25 9 7 28 28 H 0.97008 * 120.00018 * 0.02562 * 1 2 3 29 29 H 1.08007 * 120.43745 * 0.02562 * 13 12 10 30 30 H 1.08001 * 119.50912 * 180.02562 * 14 13 12 31 31 H 1.09002 * 110.51200 * 359.93811 * 20 18 17 32 32 H 1.08998 * 110.51596 * 122.65353 * 20 18 17 33 33 H 1.08997 * 110.37181 * 142.80950 * 21 20 18 34 34 H 1.08999 * 110.37259 * 265.03235 * 21 20 18 35 35 H 1.08998 * 110.37301 * 281.61474 * 23 22 21 36 36 H 1.08999 * 110.37233 * 159.38193 * 23 22 21 37 37 H 1.08003 * 120.53426 * 180.23161 * 24 16 15 38 38 H 1.09002 * 115.54943 * 148.45725 * 25 9 7 39 39 H 1.09003 * 117.49930 * 0.02562 * 26 25 9 40 40 H 1.09011 * 117.49917 * 145.01698 * 26 25 9 41 41 H 1.08996 * 117.49991 * 214.98231 * 27 25 9 42 42 H 1.09007 * 117.49539 * 359.97339 * 27 25 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3132 0.0000 0.0000 3 14 2.2473 1.6177 0.0000 4 1 2.3724 2.1171 -1.3929 5 1 1.5113 2.6143 0.8189 6 1 3.6007 1.4079 0.5740 7 6 2.0088 -1.2047 0.0005 8 1 1.5075 -2.1175 0.2870 9 7 3.3275 -1.2332 -0.3619 10 6 3.7487 -0.5257 -1.4288 11 8 2.9727 0.1961 -2.0242 12 6 5.1561 -0.6274 -1.8756 13 6 5.4749 -0.6990 -3.2375 14 6 6.7988 -0.7935 -3.6130 15 7 7.7611 -0.8121 -2.7105 16 6 7.5070 -0.7521 -1.4146 17 8 8.5338 -0.7797 -0.5280 18 6 9.8536 -0.8804 -1.0667 19 1 9.8426 -1.4455 -1.9987 20 6 10.8094 -1.5379 -0.0462 21 6 11.8748 -0.4522 0.2237 22 8 11.2206 0.7973 -0.0990 23 6 10.4545 0.5247 -1.2927 24 6 6.2020 -0.6552 -0.9505 25 6 4.2821 -2.0329 0.4099 26 6 3.7315 -2.8649 1.5698 27 6 4.5561 -1.6069 1.8535 28 1 -0.4850 0.8401 -0.0004 29 1 4.6945 -0.6805 -3.9839 30 1 7.0517 -0.8487 -4.6615 31 1 10.2762 -1.7861 0.8715 32 1 11.2709 -2.4280 -0.4736 33 1 12.1721 -0.4647 1.2723 34 1 12.7427 -0.6045 -0.4178 35 1 11.1038 0.5233 -2.1682 36 1 9.6608 1.2624 -1.4109 37 1 5.9990 -0.6027 0.1090 38 1 5.1136 -2.4498 -0.1583 39 1 2.6590 -2.8176 1.7585 40 1 4.2011 -3.8291 1.7650 41 1 5.5678 -1.7438 2.2353 42 1 4.0264 -0.7313 2.2291 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000273283930.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:37:04 Heat of formation + Delta-G solvation = -45.850657 kcal Electronic energy + Delta-G solvation = -27212.432567 eV Core-core repulsion = 23352.265608 eV Total energy + Delta-G solvation = -3860.166959 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -42.10095 -41.08182 -40.07919 -38.39588 -38.09244 -35.10631 -34.03409 -33.21179 -32.82567 -31.25149 -29.72371 -27.72140 -25.54737 -24.63942 -23.96427 -23.36858 -23.03804 -22.17815 -21.41378 -19.99638 -18.69481 -18.15728 -17.92890 -17.42146 -17.25131 -17.01561 -16.97552 -16.19986 -16.12172 -15.81897 -15.65767 -15.45101 -15.16543 -14.74473 -14.66343 -14.50358 -14.08650 -13.63828 -13.50285 -13.27022 -13.04733 -12.94059 -12.52108 -12.50229 -12.25931 -12.12659 -11.97252 -11.94362 -11.74749 -11.40236 -11.07741 -10.97086 -10.79313 -10.75719 -10.46878 -9.58784 -9.53384 -8.53562 -6.29379 -0.26894 0.08506 1.13547 1.26751 1.42486 1.75833 1.87817 2.33017 2.38888 2.69741 2.84537 2.96485 3.12300 3.18807 3.50513 3.55018 3.76241 3.91050 3.91977 3.95535 4.06068 4.08618 4.12130 4.21027 4.22668 4.41608 4.52518 4.58910 4.65830 4.71549 4.80890 4.80924 4.88030 4.89649 5.01796 5.13367 5.16516 5.29564 5.38641 5.57435 5.73192 5.75767 6.19152 6.57000 6.69010 6.70366 7.15567 7.64691 8.53069 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.017880 B = 0.004038 C = 0.003803 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1565.644814 B = 6932.626145 C = 7361.761029 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.053 3.947 3 Si 0.961 3.039 4 H -0.279 1.279 5 H -0.303 1.303 6 H -0.273 1.273 7 C -0.341 4.341 8 H 0.084 0.916 9 N -0.427 5.427 10 C 0.475 3.525 11 O -0.579 6.579 12 C -0.042 4.042 13 C -0.174 4.174 14 C 0.155 3.845 15 N -0.531 5.531 16 C 0.318 3.682 17 O -0.301 6.301 18 C 0.051 3.949 19 H 0.114 0.886 20 C -0.148 4.148 21 C 0.040 3.960 22 O -0.402 6.402 23 C 0.032 3.968 24 C -0.179 4.179 25 C 0.033 3.967 26 C -0.158 4.158 27 C -0.184 4.184 28 H 0.277 0.723 29 H 0.145 0.855 30 H 0.210 0.790 31 H 0.086 0.914 32 H 0.119 0.881 33 H 0.106 0.894 34 H 0.085 0.915 35 H 0.096 0.904 36 H 0.075 0.925 37 H 0.147 0.853 38 H 0.139 0.861 39 H 0.084 0.916 40 H 0.131 0.869 41 H 0.130 0.870 42 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 25.335 -6.111 -1.973 26.136 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.153 4.153 3 Si 0.792 3.208 4 H -0.206 1.206 5 H -0.233 1.233 6 H -0.198 1.198 7 C -0.468 4.468 8 H 0.102 0.898 9 N -0.144 5.144 10 C 0.267 3.733 11 O -0.466 6.466 12 C -0.053 4.053 13 C -0.195 4.195 14 C 0.000 4.000 15 N -0.255 5.255 16 C 0.140 3.860 17 O -0.208 6.208 18 C -0.005 4.005 19 H 0.131 0.869 20 C -0.186 4.186 21 C -0.036 4.036 22 O -0.321 6.321 23 C -0.045 4.045 24 C -0.200 4.200 25 C -0.071 4.071 26 C -0.195 4.195 27 C -0.223 4.223 28 H 0.086 0.914 29 H 0.163 0.837 30 H 0.227 0.773 31 H 0.105 0.895 32 H 0.138 0.862 33 H 0.124 0.876 34 H 0.104 0.896 35 H 0.114 0.886 36 H 0.093 0.907 37 H 0.164 0.836 38 H 0.156 0.844 39 H 0.102 0.898 40 H 0.149 0.851 41 H 0.148 0.852 42 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 25.646 -5.556 -2.066 26.322 hybrid contribution -1.544 0.947 0.124 1.815 sum 24.102 -4.610 -1.942 24.615 Atomic orbital electron populations 1.69742 1.07790 1.29038 1.46703 1.25901 0.95410 1.01720 0.92273 0.85502 0.78623 0.79985 0.76646 1.20642 1.23254 1.19821 1.18747 0.84419 0.95086 1.48587 0.89829 1.43144 1.07323 1.41429 1.22551 1.18791 0.88123 0.85004 0.81389 1.90565 1.56449 1.41665 1.57875 1.20234 0.92232 0.97363 0.95470 1.22234 0.99694 1.03308 0.94310 1.22927 0.85981 0.91116 1.00001 1.67237 1.38419 1.19110 1.00772 1.19535 0.86724 0.92609 0.87132 1.86360 1.14780 1.87005 1.32669 1.24016 0.79204 0.97576 0.99703 0.86851 1.23165 0.95525 0.99947 0.99913 1.23729 0.95095 0.81594 1.03184 1.89205 1.64788 1.33554 1.44573 1.23896 0.95441 0.96117 0.89068 1.21406 0.89725 1.07142 1.01749 1.22314 0.95831 1.00770 0.88156 1.23245 1.00597 0.96017 0.99680 1.23381 1.02278 0.98977 0.97616 0.91366 0.83697 0.77348 0.89531 0.86228 0.87622 0.89639 0.88618 0.90699 0.83584 0.84378 0.89763 0.85112 0.85151 0.90992 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -55.76 13.95 21.69 0.30 -55.46 16 2 C 0.05 3.19 4.90 84.98 0.42 3.61 16 3 Si 0.96 52.63 24.59 68.60 1.69 54.32 16 4 H -0.28 -16.31 6.26 99.48 0.62 -15.68 16 5 H -0.30 -15.93 7.11 99.48 0.71 -15.22 16 6 H -0.27 -14.30 7.11 99.48 0.71 -13.60 16 7 C -0.34 -19.33 8.64 84.13 0.73 -18.60 16 8 H 0.08 4.94 7.09 -2.91 -0.02 4.92 16 9 N -0.43 -20.65 2.49 -616.24 -1.53 -22.18 16 10 C 0.47 23.27 5.73 86.84 0.50 23.77 16 11 O -0.58 -33.19 11.99 -3.90 -0.05 -33.24 16 12 C -0.04 -1.60 5.27 -19.90 -0.10 -1.71 16 13 C -0.17 -5.38 9.78 22.64 0.22 -5.16 16 14 C 0.15 3.56 11.16 84.60 0.94 4.51 16 15 N -0.53 -13.22 8.66 -309.16 -2.68 -15.90 16 16 C 0.32 9.05 7.48 84.78 0.63 9.69 16 17 O -0.30 -7.77 9.76 -90.09 -0.88 -8.65 16 18 C 0.05 0.96 3.32 31.61 0.10 1.07 16 19 H 0.11 1.92 7.09 -2.38 -0.02 1.91 16 20 C -0.15 -1.93 6.90 31.61 0.22 -1.71 16 21 C 0.04 0.53 7.63 72.49 0.55 1.08 16 22 O -0.40 -8.87 11.67 -148.98 -1.74 -10.61 16 23 C 0.03 0.63 7.37 72.49 0.53 1.16 16 24 C -0.18 -5.96 7.59 22.76 0.17 -5.79 16 25 C 0.03 1.22 4.39 44.99 0.20 1.42 16 26 C -0.16 -5.10 9.80 30.61 0.30 -4.80 16 27 C -0.18 -5.96 9.41 30.62 0.29 -5.67 16 28 H 0.28 16.27 8.31 -92.70 -0.77 15.50 16 29 H 0.15 4.40 8.06 -2.91 -0.02 4.38 16 30 H 0.21 2.81 8.06 -2.91 -0.02 2.78 16 31 H 0.09 1.26 8.00 -2.39 -0.02 1.24 16 32 H 0.12 0.88 8.14 -2.39 -0.02 0.86 16 33 H 0.11 1.14 8.14 -2.39 -0.02 1.12 16 34 H 0.09 0.74 8.14 -2.39 -0.02 0.72 16 35 H 0.10 1.41 8.14 -2.39 -0.02 1.39 16 36 H 0.07 1.78 8.09 -2.39 -0.02 1.76 16 37 H 0.15 4.95 5.54 -2.91 -0.02 4.93 16 38 H 0.14 4.40 6.13 -2.39 -0.01 4.39 16 39 H 0.08 3.24 6.55 -2.39 -0.02 3.23 16 40 H 0.13 3.13 8.14 -2.38 -0.02 3.11 16 41 H 0.13 3.19 8.14 -2.39 -0.02 3.17 16 42 H 0.07 2.74 8.14 -2.38 -0.02 2.72 16 Total: -1.00 -77.03 342.90 1.78 -75.25 By element: Atomic # 1 Polarization: 12.64 SS G_CDS: 0.96 Total: 13.60 kcal Atomic # 6 Polarization: -2.84 SS G_CDS: 5.71 Total: 2.86 kcal Atomic # 7 Polarization: -89.63 SS G_CDS: -3.91 Total: -93.54 kcal Atomic # 8 Polarization: -49.83 SS G_CDS: -2.66 Total: -52.49 kcal Atomic # 14 Polarization: 52.63 SS G_CDS: 1.69 Total: 54.32 kcal Total: -77.03 1.78 -75.25 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273283930.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.400 kcal (2) G-P(sol) polarization free energy of solvation -77.029 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.629 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.778 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.251 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.851 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds