Wall clock time and date at job start Tue Mar 31 2020 12:37:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31323 * 1 3 3 Si 1.86801 * 119.99989 * 2 1 4 4 H 1.48497 * 109.46991 * 269.99742 * 3 2 1 5 5 H 1.48496 * 109.47175 * 30.00141 * 3 2 1 6 6 H 1.48501 * 109.47254 * 150.00102 * 3 2 1 7 7 C 1.39107 * 120.00008 * 179.97438 * 2 1 3 8 8 H 1.08006 * 120.00097 * 192.08869 * 7 2 1 9 9 N 1.36791 * 119.99843 * 12.09795 * 7 2 1 10 10 C 1.34782 * 119.99943 * 238.83438 * 9 7 2 11 11 O 1.21555 * 120.00334 * 187.21285 * 10 9 7 12 12 C 1.48014 * 119.99662 * 7.21673 * 10 9 7 13 13 C 1.40054 * 120.89853 * 8.70016 * 12 10 9 14 14 C 1.37940 * 119.12275 * 179.75437 * 13 12 10 15 15 N 1.31930 * 120.98081 * 0.53696 * 14 13 12 16 16 C 1.32198 * 121.99482 * 359.73410 * 15 14 13 17 17 O 1.35678 * 119.62075 * 179.97438 * 16 15 14 18 18 C 1.42898 * 117.00292 * 359.97438 * 17 16 15 19 19 H 1.08997 * 110.75344 * 32.01629 * 18 17 16 20 20 C 1.55309 * 110.85189 * 155.71302 * 18 17 16 21 21 C 1.54943 * 100.94240 * 152.32203 * 20 18 17 22 22 O 1.43650 * 105.13626 * 323.55365 * 21 20 18 23 23 C 1.43239 * 109.97010 * 24.43051 * 22 21 20 24 24 C 1.38851 * 120.75986 * 359.97438 * 16 15 14 25 25 C 1.46499 * 120.00480 * 58.83552 * 9 7 2 26 26 C 1.53002 * 117.49620 * 0.49293 * 25 9 7 27 27 C 1.53003 * 117.49887 * 69.15365 * 25 9 7 28 28 H 0.97003 * 120.00083 * 4.97742 * 1 2 3 29 29 H 1.08009 * 120.43945 * 359.97438 * 13 12 10 30 30 H 1.07997 * 119.50417 * 180.27359 * 14 13 12 31 31 H 1.09004 * 111.12365 * 270.24514 * 20 18 17 32 32 H 1.08999 * 111.12201 * 34.40469 * 20 18 17 33 33 H 1.08997 * 110.30920 * 204.64108 * 21 20 18 34 34 H 1.08993 * 110.30824 * 82.46952 * 21 20 18 35 35 H 1.08993 * 109.82851 * 238.77392 * 23 22 21 36 36 H 1.08997 * 109.90514 * 117.84053 * 23 22 21 37 37 H 1.08002 * 120.53536 * 180.02562 * 24 16 15 38 38 H 1.09001 * 115.55012 * 214.82512 * 25 9 7 39 39 H 1.08995 * 117.49992 * 215.00069 * 26 25 9 40 40 H 1.09001 * 117.49805 * 0.02762 * 26 25 9 41 41 H 1.08993 * 117.49661 * 359.97438 * 27 25 9 42 42 H 1.08999 * 117.49891 * 144.97819 * 27 25 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3132 0.0000 0.0000 3 14 2.2472 1.6177 0.0000 4 1 2.4948 2.0464 -1.4001 5 1 1.4447 2.6527 0.7000 6 1 3.5448 1.4402 0.7000 7 6 2.0088 -1.2047 0.0005 8 1 3.0709 -1.2150 0.1964 9 7 1.3476 -2.3763 -0.2472 10 6 1.3579 -3.3631 0.6708 11 8 0.8843 -4.4495 0.4007 12 6 1.9458 -3.1237 2.0079 13 6 2.3315 -1.8369 2.4041 14 6 2.8708 -1.6548 3.6606 15 7 3.0360 -2.6732 4.4829 16 6 2.6918 -3.9053 4.1498 17 8 2.8836 -4.9172 5.0332 18 6 3.4595 -4.5758 6.2956 19 1 3.1616 -3.5717 6.5972 20 6 3.0748 -5.6200 7.3791 21 6 4.2852 -5.5064 8.3398 22 8 5.4206 -5.2854 7.4881 23 6 4.9974 -4.7023 6.2501 24 6 2.1362 -4.1760 2.9064 25 6 0.6282 -2.5586 -1.5104 26 6 0.6638 -1.4061 -2.5162 27 6 1.4626 -2.6837 -2.7868 28 1 -0.4850 0.8369 -0.0729 29 1 2.2049 -0.9977 1.7361 30 1 3.1662 -0.6645 3.9741 31 1 2.1477 -5.3424 7.8807 32 1 3.0042 -6.6206 6.9528 33 1 4.4092 -6.4313 8.9031 34 1 4.1517 -4.6641 9.0185 35 1 5.2912 -5.3442 5.4196 36 1 5.4462 -3.7161 6.1318 37 1 1.8560 -5.1839 2.6383 38 1 -0.2886 -3.1449 -1.4489 39 1 -0.2296 -1.2343 -3.1164 40 1 1.2227 -0.5126 -2.2382 41 1 2.5466 -2.6299 -2.6867 42 1 1.0948 -3.3525 -3.5649 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000273283931.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:37:09 Heat of formation + Delta-G solvation = -25.954919 kcal Electronic energy + Delta-G solvation = -26716.697049 eV Core-core repulsion = 22857.392834 eV Total energy + Delta-G solvation = -3859.304215 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -40.48974 -39.52608 -38.60159 -37.04004 -36.15955 -33.75796 -31.91486 -31.83977 -31.24106 -29.76108 -28.74678 -25.62922 -24.42732 -23.07985 -22.36669 -21.96494 -21.43300 -20.67765 -19.68234 -18.39631 -17.16294 -16.95899 -16.64077 -15.87342 -15.43241 -15.24127 -15.04830 -14.86669 -14.57328 -14.51240 -13.98411 -13.85358 -13.47358 -13.23435 -13.04995 -12.92467 -12.59456 -12.36234 -12.16325 -11.71753 -11.69403 -11.61619 -11.13994 -11.03486 -10.88241 -10.67575 -10.59274 -10.52680 -9.83980 -9.70722 -9.49070 -9.37548 -9.16930 -9.05528 -8.63792 -7.98868 -7.41130 -6.59466 -4.50505 1.42239 1.78094 2.95078 3.02858 3.06127 3.06661 3.72221 3.77111 3.85522 4.26702 4.39779 4.51082 4.59946 4.63901 4.71830 4.87329 4.98718 5.04109 5.13169 5.43962 5.49067 5.53743 5.62699 5.64891 5.73336 5.77738 5.85661 5.87486 5.98592 6.00938 6.17539 6.22141 6.39028 6.55942 6.68157 6.76064 6.87058 6.95347 7.05187 7.12430 7.26725 7.61468 7.85286 8.08379 8.27992 8.72288 9.19551 9.66127 10.37142 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.019940 B = 0.003473 C = 0.003111 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1403.904220 B = 8059.374727 C = 8998.006104 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.829 5.829 2 C 0.058 3.942 3 Si 0.898 3.102 4 H -0.270 1.270 5 H -0.278 1.278 6 H -0.260 1.260 7 C -0.356 4.356 8 H 0.091 0.909 9 N -0.403 5.403 10 C 0.528 3.472 11 O -0.588 6.588 12 C -0.024 4.024 13 C -0.172 4.172 14 C 0.104 3.896 15 N -0.540 5.540 16 C 0.287 3.713 17 O -0.295 6.295 18 C 0.063 3.937 19 H 0.104 0.896 20 C -0.155 4.155 21 C 0.054 3.946 22 O -0.381 6.381 23 C 0.036 3.964 24 C -0.144 4.144 25 C 0.107 3.893 26 C -0.152 4.152 27 C -0.210 4.210 28 H 0.275 0.725 29 H 0.208 0.792 30 H 0.155 0.845 31 H 0.091 0.909 32 H 0.090 0.910 33 H 0.090 0.910 34 H 0.064 0.936 35 H 0.077 0.923 36 H 0.079 0.921 37 H 0.142 0.858 38 H 0.104 0.896 39 H 0.078 0.922 40 H 0.106 0.894 41 H 0.088 0.912 42 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.736 -1.950 8.474 9.902 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.460 5.460 2 C -0.154 4.154 3 Si 0.723 3.277 4 H -0.195 1.195 5 H -0.203 1.203 6 H -0.184 1.184 7 C -0.483 4.483 8 H 0.108 0.892 9 N -0.120 5.120 10 C 0.317 3.683 11 O -0.473 6.473 12 C -0.035 4.035 13 C -0.190 4.190 14 C -0.051 4.051 15 N -0.264 5.264 16 C 0.109 3.891 17 O -0.203 6.203 18 C 0.005 3.995 19 H 0.121 0.879 20 C -0.193 4.193 21 C -0.023 4.023 22 O -0.300 6.300 23 C -0.041 4.041 24 C -0.166 4.166 25 C 0.003 3.997 26 C -0.189 4.189 27 C -0.249 4.249 28 H 0.086 0.914 29 H 0.224 0.776 30 H 0.172 0.828 31 H 0.109 0.891 32 H 0.109 0.891 33 H 0.108 0.892 34 H 0.082 0.918 35 H 0.095 0.905 36 H 0.097 0.903 37 H 0.160 0.840 38 H 0.121 0.879 39 H 0.097 0.903 40 H 0.124 0.876 41 H 0.106 0.894 42 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 4.801 -2.522 9.222 10.698 hybrid contribution -0.223 1.045 -0.792 1.330 sum 4.579 -1.476 8.430 9.706 Atomic orbital electron populations 1.69909 1.06170 1.28752 1.41184 1.25673 0.95337 0.99734 0.94652 0.86377 0.80218 0.81715 0.79428 1.19536 1.20268 1.18434 1.19120 0.93011 0.83645 1.52567 0.89152 1.42494 1.44968 1.13262 1.11317 1.18229 0.81432 0.84958 0.83647 1.90629 1.51120 1.25318 1.80186 1.20186 0.95772 0.92967 0.94587 1.24718 0.95275 1.01319 0.97727 1.22492 0.96353 0.95995 0.90212 1.66927 1.22412 0.99490 1.37558 1.19427 0.95214 0.85957 0.88475 1.86275 1.77563 1.31653 1.24846 1.23743 0.92537 1.00540 0.82646 0.87859 1.23361 0.99565 1.00714 0.95633 1.23315 0.84391 1.01559 0.93008 1.88420 1.30972 1.83157 1.27489 1.23569 0.94172 0.99176 0.87215 1.21082 1.02755 1.01343 0.91436 1.21295 0.95953 1.01282 0.81208 1.22983 1.01001 0.93648 1.01279 1.23323 0.99032 1.01652 1.00851 0.91389 0.77589 0.82808 0.89066 0.89099 0.89219 0.91781 0.90456 0.90333 0.84023 0.87852 0.90315 0.87585 0.89393 0.90087 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -19.50 12.38 55.50 0.69 -18.81 16 2 C 0.06 1.26 2.59 -17.45 -0.05 1.21 16 3 Si 0.90 16.78 29.44 -169.99 -5.00 11.77 16 4 H -0.27 -5.09 7.11 56.52 0.40 -4.69 16 5 H -0.28 -5.26 7.11 56.52 0.40 -4.86 16 6 H -0.26 -4.69 7.11 56.52 0.40 -4.29 16 7 C -0.36 -7.98 4.81 -15.02 -0.07 -8.05 16 8 H 0.09 1.99 7.13 -52.48 -0.37 1.61 16 9 N -0.40 -9.55 2.65 -111.90 -0.30 -9.85 16 10 C 0.53 12.90 7.60 -12.25 -0.09 12.80 16 11 O -0.59 -15.50 16.38 5.32 0.09 -15.41 16 12 C -0.02 -0.53 5.84 -104.67 -0.61 -1.14 16 13 C -0.17 -3.42 8.53 -39.01 -0.33 -3.75 16 14 C 0.10 1.81 11.17 -17.62 -0.20 1.61 16 15 N -0.54 -9.52 8.68 -13.39 -0.12 -9.64 16 16 C 0.29 5.28 7.48 -17.17 -0.13 5.15 16 17 O -0.30 -4.85 9.85 -18.73 -0.18 -5.03 16 18 C 0.06 0.84 3.19 -24.78 -0.08 0.76 16 19 H 0.10 1.42 7.14 -51.93 -0.37 1.05 16 20 C -0.16 -1.60 6.89 -24.48 -0.17 -1.77 16 21 C 0.05 0.51 7.78 38.18 0.30 0.81 16 22 O -0.38 -4.93 11.36 -35.23 -0.40 -5.33 16 23 C 0.04 0.47 7.58 37.88 0.29 0.76 16 24 C -0.14 -2.91 9.61 -38.82 -0.37 -3.28 16 25 C 0.11 2.40 5.52 -67.93 -0.37 2.02 16 26 C -0.15 -3.03 8.77 -26.69 -0.23 -3.26 16 27 C -0.21 -4.02 10.41 -26.69 -0.28 -4.30 16 28 H 0.28 6.14 8.31 -40.82 -0.34 5.80 16 29 H 0.21 4.31 3.25 -58.47 -0.19 4.12 16 30 H 0.15 2.18 8.06 -52.49 -0.42 1.76 16 31 H 0.09 0.80 8.14 -51.93 -0.42 0.37 16 32 H 0.09 0.94 8.14 -51.93 -0.42 0.52 16 33 H 0.09 0.69 8.14 -51.93 -0.42 0.26 16 34 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 35 H 0.08 1.06 8.05 -51.93 -0.42 0.64 16 36 H 0.08 1.03 8.14 -51.93 -0.42 0.61 16 37 H 0.14 2.83 7.77 -52.49 -0.41 2.42 16 38 H 0.10 2.39 7.97 -51.93 -0.41 1.98 16 39 H 0.08 1.44 8.14 -51.93 -0.42 1.02 16 40 H 0.11 2.25 5.80 -51.93 -0.30 1.95 16 41 H 0.09 1.70 8.14 -51.93 -0.42 1.28 16 42 H 0.08 1.37 8.14 -51.93 -0.42 0.95 16 LS Contribution 348.42 15.07 5.25 5.25 Total: -1.00 -27.07 348.42 -7.80 -34.87 By element: Atomic # 1 Polarization: 18.02 SS G_CDS: -5.42 Total: 12.61 kcal Atomic # 6 Polarization: 1.98 SS G_CDS: -2.40 Total: -0.43 kcal Atomic # 7 Polarization: -38.57 SS G_CDS: 0.27 Total: -38.30 kcal Atomic # 8 Polarization: -25.27 SS G_CDS: -0.50 Total: -25.77 kcal Atomic # 14 Polarization: 16.78 SS G_CDS: -5.00 Total: 11.77 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -27.07 -7.80 -34.87 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273283931.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.911 kcal (2) G-P(sol) polarization free energy of solvation -27.070 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.160 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.795 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.865 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.955 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds