Wall clock time and date at job start Tue Mar 31 2020 12:37:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31323 * 1 3 3 Si 1.86801 * 119.99989 * 2 1 4 4 H 1.48497 * 109.46991 * 269.99742 * 3 2 1 5 5 H 1.48496 * 109.47175 * 30.00141 * 3 2 1 6 6 H 1.48501 * 109.47254 * 150.00102 * 3 2 1 7 7 C 1.39107 * 120.00008 * 179.97438 * 2 1 3 8 8 H 1.08006 * 120.00097 * 192.08869 * 7 2 1 9 9 N 1.36791 * 119.99843 * 12.09795 * 7 2 1 10 10 C 1.34782 * 119.99943 * 238.83438 * 9 7 2 11 11 O 1.21555 * 120.00334 * 187.21285 * 10 9 7 12 12 C 1.48014 * 119.99662 * 7.21673 * 10 9 7 13 13 C 1.40054 * 120.89853 * 8.70016 * 12 10 9 14 14 C 1.37940 * 119.12275 * 179.75437 * 13 12 10 15 15 N 1.31930 * 120.98081 * 0.53696 * 14 13 12 16 16 C 1.32198 * 121.99482 * 359.73410 * 15 14 13 17 17 O 1.35678 * 119.62075 * 179.97438 * 16 15 14 18 18 C 1.42898 * 117.00292 * 359.97438 * 17 16 15 19 19 H 1.08997 * 110.75344 * 32.01629 * 18 17 16 20 20 C 1.55309 * 110.85189 * 155.71302 * 18 17 16 21 21 C 1.54943 * 100.94240 * 152.32203 * 20 18 17 22 22 O 1.43650 * 105.13626 * 323.55365 * 21 20 18 23 23 C 1.43239 * 109.97010 * 24.43051 * 22 21 20 24 24 C 1.38851 * 120.75986 * 359.97438 * 16 15 14 25 25 C 1.46499 * 120.00480 * 58.83552 * 9 7 2 26 26 C 1.53002 * 117.49620 * 0.49293 * 25 9 7 27 27 C 1.53003 * 117.49887 * 69.15365 * 25 9 7 28 28 H 0.97003 * 120.00083 * 4.97742 * 1 2 3 29 29 H 1.08009 * 120.43945 * 359.97438 * 13 12 10 30 30 H 1.07997 * 119.50417 * 180.27359 * 14 13 12 31 31 H 1.09004 * 111.12365 * 270.24514 * 20 18 17 32 32 H 1.08999 * 111.12201 * 34.40469 * 20 18 17 33 33 H 1.08997 * 110.30920 * 204.64108 * 21 20 18 34 34 H 1.08993 * 110.30824 * 82.46952 * 21 20 18 35 35 H 1.08993 * 109.82851 * 238.77392 * 23 22 21 36 36 H 1.08997 * 109.90514 * 117.84053 * 23 22 21 37 37 H 1.08002 * 120.53536 * 180.02562 * 24 16 15 38 38 H 1.09001 * 115.55012 * 214.82512 * 25 9 7 39 39 H 1.08995 * 117.49992 * 215.00069 * 26 25 9 40 40 H 1.09001 * 117.49805 * 0.02762 * 26 25 9 41 41 H 1.08993 * 117.49661 * 359.97438 * 27 25 9 42 42 H 1.08999 * 117.49891 * 144.97819 * 27 25 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3132 0.0000 0.0000 3 14 2.2472 1.6177 0.0000 4 1 2.4948 2.0464 -1.4001 5 1 1.4447 2.6527 0.7000 6 1 3.5448 1.4402 0.7000 7 6 2.0088 -1.2047 0.0005 8 1 3.0709 -1.2150 0.1964 9 7 1.3476 -2.3763 -0.2472 10 6 1.3579 -3.3631 0.6708 11 8 0.8843 -4.4495 0.4007 12 6 1.9458 -3.1237 2.0079 13 6 2.3315 -1.8369 2.4041 14 6 2.8708 -1.6548 3.6606 15 7 3.0360 -2.6732 4.4829 16 6 2.6918 -3.9053 4.1498 17 8 2.8836 -4.9172 5.0332 18 6 3.4595 -4.5758 6.2956 19 1 3.1616 -3.5717 6.5972 20 6 3.0748 -5.6200 7.3791 21 6 4.2852 -5.5064 8.3398 22 8 5.4206 -5.2854 7.4881 23 6 4.9974 -4.7023 6.2501 24 6 2.1362 -4.1760 2.9064 25 6 0.6282 -2.5586 -1.5104 26 6 0.6638 -1.4061 -2.5162 27 6 1.4626 -2.6837 -2.7868 28 1 -0.4850 0.8369 -0.0729 29 1 2.2049 -0.9977 1.7361 30 1 3.1662 -0.6645 3.9741 31 1 2.1477 -5.3424 7.8807 32 1 3.0042 -6.6206 6.9528 33 1 4.4092 -6.4313 8.9031 34 1 4.1517 -4.6641 9.0185 35 1 5.2912 -5.3442 5.4196 36 1 5.4462 -3.7161 6.1318 37 1 1.8560 -5.1839 2.6383 38 1 -0.2886 -3.1449 -1.4489 39 1 -0.2296 -1.2343 -3.1164 40 1 1.2227 -0.5126 -2.2382 41 1 2.5466 -2.6299 -2.6867 42 1 1.0948 -3.3525 -3.5649 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000273283931.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:37:08 Heat of formation + Delta-G solvation = -42.875364 kcal Electronic energy + Delta-G solvation = -26717.430775 eV Core-core repulsion = 22857.392834 eV Total energy + Delta-G solvation = -3860.037941 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.89215 -40.90172 -40.01319 -38.37120 -37.91813 -35.44586 -33.59325 -33.06630 -32.68584 -31.07448 -29.81125 -27.38079 -25.99173 -24.36323 -23.59616 -23.19392 -22.95705 -22.12040 -21.34819 -19.87440 -18.70842 -18.32322 -17.78587 -17.26089 -17.03803 -16.58717 -16.42588 -16.28065 -16.12878 -15.80135 -15.57713 -15.32120 -14.86244 -14.57788 -14.44444 -14.23274 -13.88698 -13.74559 -13.43942 -13.33453 -13.23498 -12.81420 -12.56251 -12.47100 -12.13288 -12.00872 -11.89706 -11.81432 -11.49539 -11.19070 -10.97317 -10.79276 -10.76158 -10.61766 -10.32581 -9.44251 -9.18347 -8.29716 -6.26533 -0.16922 0.27938 1.48140 1.53577 1.62950 1.76872 2.04538 2.27590 2.72713 2.84116 2.88783 2.96832 3.28155 3.36771 3.39555 3.75055 3.93841 3.96030 4.01261 4.15429 4.17306 4.19889 4.26357 4.32515 4.40760 4.49405 4.63752 4.69887 4.76264 4.78203 4.84929 4.85501 4.95222 5.00262 5.08956 5.25997 5.35417 5.43720 5.48944 5.70249 5.86051 6.08372 6.22513 6.34314 6.80810 6.98808 7.38062 7.88392 8.68921 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.019940 B = 0.003473 C = 0.003111 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1403.904220 B = 8059.374727 C = 8998.006104 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.863 5.863 2 C 0.035 3.965 3 Si 0.959 3.041 4 H -0.270 1.270 5 H -0.280 1.280 6 H -0.245 1.245 7 C -0.364 4.364 8 H 0.094 0.906 9 N -0.405 5.405 10 C 0.506 3.494 11 O -0.625 6.625 12 C -0.044 4.044 13 C -0.182 4.182 14 C 0.120 3.880 15 N -0.530 5.530 16 C 0.296 3.704 17 O -0.301 6.301 18 C 0.053 3.947 19 H 0.104 0.896 20 C -0.149 4.149 21 C 0.051 3.949 22 O -0.397 6.397 23 C 0.040 3.960 24 C -0.160 4.160 25 C 0.068 3.932 26 C -0.137 4.137 27 C -0.185 4.185 28 H 0.278 0.722 29 H 0.201 0.799 30 H 0.195 0.805 31 H 0.110 0.890 32 H 0.088 0.912 33 H 0.112 0.888 34 H 0.081 0.919 35 H 0.066 0.934 36 H 0.078 0.922 37 H 0.132 0.868 38 H 0.084 0.916 39 H 0.095 0.905 40 H 0.095 0.905 41 H 0.086 0.914 42 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.987 -0.573 9.809 11.506 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.495 5.495 2 C -0.174 4.174 3 Si 0.780 3.220 4 H -0.195 1.195 5 H -0.205 1.205 6 H -0.168 1.168 7 C -0.491 4.491 8 H 0.112 0.888 9 N -0.121 5.121 10 C 0.297 3.703 11 O -0.513 6.513 12 C -0.055 4.055 13 C -0.201 4.201 14 C -0.035 4.035 15 N -0.255 5.255 16 C 0.118 3.882 17 O -0.209 6.209 18 C -0.003 4.003 19 H 0.122 0.878 20 C -0.186 4.186 21 C -0.024 4.024 22 O -0.317 6.317 23 C -0.037 4.037 24 C -0.182 4.182 25 C -0.036 4.036 26 C -0.175 4.175 27 C -0.224 4.224 28 H 0.088 0.912 29 H 0.217 0.783 30 H 0.212 0.788 31 H 0.129 0.871 32 H 0.107 0.893 33 H 0.130 0.870 34 H 0.099 0.901 35 H 0.084 0.916 36 H 0.096 0.904 37 H 0.150 0.850 38 H 0.102 0.898 39 H 0.114 0.886 40 H 0.114 0.886 41 H 0.105 0.895 42 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges 6.069 -1.152 10.563 12.236 hybrid contribution -0.623 0.574 -1.133 1.415 sum 5.446 -0.578 9.429 10.904 Atomic orbital electron populations 1.70009 1.07742 1.29654 1.42097 1.26261 0.95645 1.02066 0.93468 0.85449 0.79550 0.77590 0.79364 1.19526 1.20508 1.16818 1.19316 0.93126 0.83535 1.53096 0.88821 1.42709 1.44327 1.13453 1.11590 1.18809 0.81737 0.84905 0.84869 1.90571 1.53063 1.26619 1.81072 1.20122 0.97113 0.94427 0.93806 1.24589 0.96407 1.00100 0.98998 1.23042 0.94130 0.97466 0.88843 1.67105 1.22024 0.99171 1.37171 1.19397 0.94091 0.86560 0.88135 1.86276 1.77511 1.31230 1.25857 1.24051 0.92762 1.01736 0.81797 0.87833 1.23413 1.00900 0.99601 0.94690 1.23573 0.82795 1.03498 0.92562 1.88403 1.32560 1.83188 1.27550 1.23445 0.93934 0.98931 0.87361 1.21021 1.04091 1.00682 0.92422 1.21412 0.96555 1.03553 0.82111 1.22939 1.01578 0.92957 0.99980 1.23349 0.98638 1.01289 0.99080 0.91230 0.78291 0.78794 0.87127 0.89292 0.86983 0.90061 0.91589 0.90359 0.84997 0.89839 0.88639 0.88638 0.89498 0.87487 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -40.71 12.38 21.69 0.27 -40.44 16 2 C 0.03 1.49 2.59 84.98 0.22 1.71 16 3 Si 0.96 33.17 29.44 68.60 2.02 35.19 16 4 H -0.27 -9.34 7.11 99.48 0.71 -8.64 16 5 H -0.28 -9.76 7.11 99.48 0.71 -9.06 16 6 H -0.25 -7.84 7.11 99.48 0.71 -7.13 16 7 C -0.36 -16.35 4.81 84.13 0.40 -15.94 16 8 H 0.09 4.10 7.13 -2.91 -0.02 4.07 16 9 N -0.41 -19.73 2.65 -626.22 -1.66 -21.38 16 10 C 0.51 25.87 7.60 86.84 0.66 26.53 16 11 O -0.63 -34.88 16.38 -3.89 -0.06 -34.94 16 12 C -0.04 -1.98 5.84 -19.90 -0.12 -2.10 16 13 C -0.18 -7.19 8.53 22.64 0.19 -6.99 16 14 C 0.12 3.93 11.17 84.61 0.94 4.87 16 15 N -0.53 -17.82 8.68 -309.17 -2.69 -20.51 16 16 C 0.30 10.77 7.48 84.78 0.63 11.40 16 17 O -0.30 -9.71 9.85 -89.95 -0.89 -10.59 16 18 C 0.05 1.35 3.19 31.86 0.10 1.45 16 19 H 0.10 2.62 7.14 -2.39 -0.02 2.61 16 20 C -0.15 -2.73 6.89 32.05 0.22 -2.51 16 21 C 0.05 0.84 7.78 72.65 0.56 1.40 16 22 O -0.40 -9.54 11.36 -148.98 -1.69 -11.23 16 23 C 0.04 1.02 7.58 72.45 0.55 1.57 16 24 C -0.16 -6.65 9.61 22.76 0.22 -6.44 16 25 C 0.07 3.12 5.52 44.99 0.25 3.37 16 26 C -0.14 -5.40 8.77 30.62 0.27 -5.14 16 27 C -0.19 -6.96 10.41 30.62 0.32 -6.64 16 28 H 0.28 12.34 8.31 -92.71 -0.77 11.57 16 29 H 0.20 8.21 3.25 -8.54 -0.03 8.19 16 30 H 0.20 4.73 8.06 -2.91 -0.02 4.71 16 31 H 0.11 1.61 8.14 -2.38 -0.02 1.59 16 32 H 0.09 1.69 8.14 -2.39 -0.02 1.67 16 33 H 0.11 1.35 8.14 -2.39 -0.02 1.33 16 34 H 0.08 1.08 8.14 -2.39 -0.02 1.06 16 35 H 0.07 1.79 8.05 -2.39 -0.02 1.77 16 36 H 0.08 1.95 8.14 -2.39 -0.02 1.93 16 37 H 0.13 5.60 7.77 -2.91 -0.02 5.58 16 38 H 0.08 4.07 7.97 -2.39 -0.02 4.05 16 39 H 0.10 3.39 8.14 -2.39 -0.02 3.37 16 40 H 0.10 3.99 5.80 -2.39 -0.01 3.97 16 41 H 0.09 3.29 8.14 -2.39 -0.02 3.27 16 42 H 0.11 3.44 8.14 -2.39 -0.02 3.42 16 Total: -1.00 -59.79 348.42 1.77 -58.02 By element: Atomic # 1 Polarization: 38.31 SS G_CDS: 1.03 Total: 39.34 kcal Atomic # 6 Polarization: 1.11 SS G_CDS: 5.43 Total: 6.54 kcal Atomic # 7 Polarization: -78.25 SS G_CDS: -4.07 Total: -82.33 kcal Atomic # 8 Polarization: -54.13 SS G_CDS: -2.64 Total: -56.77 kcal Atomic # 14 Polarization: 33.17 SS G_CDS: 2.02 Total: 35.19 kcal Total: -59.79 1.77 -58.02 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273283931.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.145 kcal (2) G-P(sol) polarization free energy of solvation -59.786 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.641 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.766 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.020 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.875 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds