Wall clock time and date at job start Tue Mar 31 2020 13:56:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52989 * 1 3 3 C 1.52999 * 109.47454 * 2 1 4 4 C 1.50703 * 109.47386 * 180.02562 * 3 2 1 5 5 N 1.29934 * 125.37903 * 90.00254 * 4 3 2 6 6 C 1.36067 * 108.47889 * 179.97438 * 5 4 3 7 7 C 1.47414 * 126.44826 * 179.97438 * 6 5 4 8 8 O 1.21611 * 119.99684 * 173.68238 * 7 6 5 9 9 N 1.34776 * 120.00301 * 353.68143 * 7 6 5 10 10 C 1.46498 * 119.99806 * 3.85736 * 9 7 6 11 11 C 1.50701 * 109.46999 * 83.37352 * 10 9 7 12 12 H 1.07999 * 120.00251 * 0.02562 * 11 10 9 13 13 C 1.37882 * 119.99896 * 179.97438 * 11 10 9 14 14 N 1.31515 * 120.00022 * 0.02562 * 13 11 10 15 15 Si 1.86806 * 119.99941 * 180.02562 * 13 11 10 16 16 H 1.48494 * 109.47149 * 60.00177 * 15 13 11 17 17 H 1.48502 * 109.46993 * 180.02562 * 15 13 11 18 18 H 1.48495 * 109.46805 * 299.99795 * 15 13 11 19 19 C 1.46503 * 120.00089 * 183.85059 * 9 7 6 20 20 C 1.50699 * 109.46648 * 90.00293 * 19 9 7 21 21 C 1.34515 * 125.78894 * 89.71480 * 20 19 9 22 22 C 1.41377 * 106.84549 * 179.88949 * 21 20 19 23 23 C 1.34517 * 106.83947 * 0.37181 * 22 21 20 24 24 O 1.34297 * 125.79343 * 270.02546 * 20 19 9 25 25 C 1.36100 * 107.09970 * 359.97438 * 6 5 4 26 26 O 1.34053 * 125.37641 * 269.69432 * 4 3 2 27 27 H 1.08999 * 109.47317 * 179.97438 * 1 2 3 28 28 H 1.09007 * 109.47026 * 300.00318 * 1 2 3 29 29 H 1.08999 * 109.47352 * 59.99609 * 1 2 3 30 30 H 1.09006 * 109.47466 * 239.99975 * 2 1 3 31 31 H 1.08999 * 109.47352 * 120.00391 * 2 1 3 32 32 H 1.09006 * 109.47032 * 60.00321 * 3 2 1 33 33 H 1.08999 * 109.47160 * 300.00508 * 3 2 1 34 34 H 1.08996 * 109.47023 * 203.37311 * 10 9 7 35 35 H 1.09003 * 109.47351 * 323.37787 * 10 9 7 36 36 H 0.97002 * 119.99931 * 180.02562 * 14 13 11 37 37 H 1.08997 * 109.47306 * 210.00123 * 19 9 7 38 38 H 1.08998 * 109.47399 * 330.00918 * 19 9 7 39 39 H 1.08006 * 126.58170 * 0.02693 * 21 20 19 40 40 H 1.08000 * 126.58606 * 180.16546 * 22 21 20 41 41 H 1.08000 * 125.79347 * 179.75231 * 23 22 21 42 42 H 1.07997 * 126.51909 * 180.02562 * 25 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5470 1.4424 -0.0006 5 7 4.2989 1.4426 -1.0604 6 6 5.6009 1.4431 -0.6654 7 6 6.7832 1.4430 -1.5458 8 8 7.8961 1.5593 -1.0695 9 7 6.6309 1.3138 -2.8787 10 6 5.2875 1.2586 -3.4604 11 6 4.7627 2.6590 -3.6465 12 1 5.3694 3.5055 -3.3605 13 6 3.5085 2.8596 -4.1829 14 7 2.7699 1.8288 -4.5317 15 14 2.8583 4.5955 -4.4142 16 1 3.7615 5.3453 -5.3237 17 1 1.4964 4.5395 -5.0038 18 1 2.7997 5.2814 -3.0985 19 6 7.8087 1.2288 -3.7458 20 6 8.2113 -0.2145 -3.9060 21 6 7.7685 -1.0536 -4.8595 22 6 8.4024 -2.2976 -4.6373 23 6 9.1884 -2.1467 -3.5561 24 8 9.0686 -0.8830 -3.1174 25 6 5.6062 1.4438 0.6956 26 8 4.3236 1.4481 1.0920 27 1 -0.3634 -1.0276 -0.0005 28 1 -0.3633 0.5139 0.8900 29 1 -0.3634 0.5139 -0.8899 30 1 1.8933 -0.5139 -0.8900 31 1 1.8933 -0.5139 0.8899 32 1 1.6767 1.9563 0.8901 33 1 1.6766 1.9563 -0.8899 34 1 5.3302 0.7553 -4.4263 35 1 4.6247 0.7080 -2.7928 36 1 1.8877 1.9699 -4.9094 37 1 7.5720 1.6505 -4.7226 38 1 8.6305 1.7877 -3.2982 39 1 7.0653 -0.8210 -5.6457 40 1 8.2768 -3.1974 -5.2211 41 1 9.8101 -2.9120 -3.1154 42 1 6.4767 1.4447 1.3349 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000273451928.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:56:02 Heat of formation + Delta-G solvation = 9.346963 kcal Electronic energy + Delta-G solvation = -27182.049587 eV Core-core repulsion = 23324.276176 eV Total energy + Delta-G solvation = -3857.773411 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -42.84590 -42.17634 -38.87772 -35.30475 -35.03728 -34.10757 -32.69067 -32.41826 -30.54576 -29.95964 -27.19176 -26.85946 -25.77127 -23.36445 -22.41453 -21.99939 -21.33500 -20.76344 -20.12106 -18.90080 -17.12039 -17.00287 -16.33154 -16.19566 -15.94238 -15.78866 -15.12335 -14.85728 -14.56365 -14.45800 -14.24316 -13.74866 -13.23971 -13.07313 -12.77589 -12.49448 -12.43780 -12.40305 -12.08633 -11.97226 -11.61748 -11.56577 -11.28548 -11.21807 -10.87457 -10.79318 -10.57884 -10.47030 -10.16011 -9.75809 -9.57137 -9.50182 -9.26963 -8.48133 -8.34556 -8.15294 -7.75799 -5.97772 -3.98529 1.63272 2.02537 2.70091 2.91338 3.07787 3.31166 3.35300 3.36111 3.39647 3.88857 4.04020 4.41535 4.50199 5.06136 5.09949 5.14103 5.21590 5.32602 5.35752 5.37621 5.41897 5.47327 5.68386 5.74801 5.82579 5.92455 6.02081 6.04118 6.11687 6.14389 6.20909 6.28345 6.37575 6.41606 6.42199 6.61545 6.73993 6.83981 7.48495 7.52098 7.75589 7.92776 8.15066 8.29305 8.31829 8.84745 9.03288 9.62731 11.10526 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.009885 B = 0.005300 C = 0.004337 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2831.811818 B = 5282.198162 C = 6454.475262 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.119 4.119 3 C -0.018 4.018 4 C 0.171 3.829 5 N -0.384 5.384 6 C -0.050 4.050 7 C 0.599 3.401 8 O -0.566 6.566 9 N -0.576 5.576 10 C 0.230 3.770 11 C -0.508 4.508 12 H 0.050 0.950 13 C 0.073 3.927 14 N -0.888 5.888 15 Si 0.884 3.116 16 H -0.279 1.279 17 H -0.287 1.287 18 H -0.280 1.280 19 C 0.194 3.806 20 C -0.016 4.016 21 C -0.200 4.200 22 C -0.216 4.216 23 C -0.053 4.053 24 O -0.168 6.168 25 C -0.018 4.018 26 O -0.208 6.208 27 H 0.055 0.945 28 H 0.052 0.948 29 H 0.060 0.940 30 H 0.076 0.924 31 H 0.060 0.940 32 H 0.084 0.916 33 H 0.110 0.890 34 H 0.028 0.972 35 H 0.079 0.921 36 H 0.260 0.740 37 H 0.114 0.886 38 H 0.091 0.909 39 H 0.149 0.851 40 H 0.144 0.856 41 H 0.196 0.804 42 H 0.221 0.779 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.670 -5.978 6.271 8.824 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.158 4.158 3 C -0.056 4.056 4 C -0.038 4.038 5 N -0.112 5.112 6 C -0.170 4.170 7 C 0.387 3.613 8 O -0.447 6.447 9 N -0.304 5.304 10 C 0.111 3.889 11 C -0.547 4.547 12 H 0.069 0.931 13 C -0.129 4.129 14 N -0.527 5.527 15 Si 0.713 3.287 16 H -0.205 1.205 17 H -0.213 1.213 18 H -0.205 1.205 19 C 0.070 3.930 20 C -0.068 4.068 21 C -0.220 4.220 22 C -0.235 4.235 23 C -0.121 4.121 24 O -0.063 6.063 25 C -0.091 4.091 26 O -0.095 6.095 27 H 0.074 0.926 28 H 0.071 0.929 29 H 0.079 0.921 30 H 0.095 0.905 31 H 0.079 0.921 32 H 0.102 0.898 33 H 0.129 0.871 34 H 0.046 0.954 35 H 0.096 0.904 36 H 0.069 0.931 37 H 0.132 0.868 38 H 0.110 0.890 39 H 0.167 0.833 40 H 0.161 0.839 41 H 0.213 0.787 42 H 0.238 0.762 Dipole moment (debyes) X Y Z Total from point charges 1.933 -5.818 6.035 8.603 hybrid contribution -0.242 0.795 0.230 0.862 sum 1.691 -5.023 6.265 8.206 Atomic orbital electron populations 1.21731 0.95073 1.01811 1.02022 1.21503 0.96131 0.95170 1.02974 1.20101 0.81412 0.99168 1.04936 1.26614 0.96483 1.02191 0.78466 1.71616 0.99787 1.13154 1.26664 1.21768 0.92851 1.10218 0.92212 1.16867 0.85872 0.76360 0.82167 1.90722 1.24998 1.53130 1.75807 1.48219 1.09174 1.68261 1.04792 1.19975 0.75767 0.98400 0.94767 1.21188 1.00847 0.91737 1.40902 0.93141 1.24713 0.96395 0.96185 0.95603 1.69921 1.10755 1.29166 1.42904 0.86797 0.78020 0.85625 0.78308 1.20491 1.21316 1.20540 1.19756 0.89531 0.86554 0.97112 1.23206 0.94543 0.96722 0.92326 1.21678 1.04417 0.93185 1.02701 1.21790 1.01814 0.99455 1.00454 1.23957 1.04446 0.85455 0.98254 1.84093 1.52112 1.21680 1.48451 1.25023 0.84777 1.03529 0.95821 1.84305 1.16526 1.69976 1.38683 0.92555 0.92871 0.92050 0.90532 0.92080 0.89757 0.87126 0.95416 0.90396 0.93063 0.86826 0.89041 0.83296 0.83852 0.78697 0.76223 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.61 9.91 37.15 0.37 -1.24 16 2 C -0.12 -1.56 5.92 -26.74 -0.16 -1.71 16 3 C -0.02 -0.27 5.84 -27.88 -0.16 -0.43 16 4 C 0.17 3.12 7.56 -13.08 -0.10 3.02 16 5 N -0.38 -8.37 7.13 -7.65 -0.05 -8.43 16 6 C -0.05 -1.05 6.64 -83.02 -0.55 -1.60 16 7 C 0.60 13.51 7.60 -12.52 -0.10 13.41 16 8 O -0.57 -13.09 16.45 5.27 0.09 -13.00 16 9 N -0.58 -12.79 2.46 -177.71 -0.44 -13.22 16 10 C 0.23 5.64 4.77 -5.19 -0.02 5.62 16 11 C -0.51 -13.41 8.36 -34.44 -0.29 -13.70 16 12 H 0.05 1.39 7.81 -52.49 -0.41 0.97 16 13 C 0.07 1.93 5.46 -17.82 -0.10 1.83 16 14 N -0.89 -24.18 13.29 55.43 0.74 -23.45 16 15 Si 0.88 20.85 29.54 -169.99 -5.02 15.83 16 16 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 17 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 18 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 19 C 0.19 3.72 5.94 -5.19 -0.03 3.68 16 20 C -0.02 -0.30 6.90 -35.63 -0.25 -0.55 16 21 C -0.20 -3.40 10.81 -39.70 -0.43 -3.83 16 22 C -0.22 -3.18 10.91 -39.70 -0.43 -3.62 16 23 C -0.05 -0.77 12.09 29.42 0.36 -0.41 16 24 O -0.17 -3.06 10.65 5.71 0.06 -3.00 16 25 C -0.02 -0.31 11.95 29.96 0.36 0.05 16 26 O -0.21 -3.51 10.73 6.51 0.07 -3.44 16 27 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 28 H 0.05 0.49 8.14 -51.92 -0.42 0.07 16 29 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 30 H 0.08 1.17 8.14 -51.93 -0.42 0.74 16 31 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 32 H 0.08 0.99 8.14 -51.93 -0.42 0.57 16 33 H 0.11 1.79 8.14 -51.93 -0.42 1.37 16 34 H 0.03 0.71 8.02 -51.93 -0.42 0.29 16 35 H 0.08 2.05 5.33 -51.93 -0.28 1.77 16 36 H 0.26 6.79 8.31 -40.82 -0.34 6.46 16 37 H 0.11 2.00 8.07 -51.93 -0.42 1.59 16 38 H 0.09 1.72 7.37 -51.93 -0.38 1.33 16 39 H 0.15 2.44 8.06 -52.48 -0.42 2.02 16 40 H 0.14 1.71 8.06 -52.49 -0.42 1.29 16 41 H 0.20 1.96 8.06 -52.49 -0.42 1.54 16 42 H 0.22 3.01 8.06 -52.49 -0.42 2.59 16 LS Contribution 366.35 15.07 5.52 5.52 Total: -1.00 -31.79 366.35 -6.26 -38.05 By element: Atomic # 1 Polarization: 10.29 SS G_CDS: -5.69 Total: 4.60 kcal Atomic # 6 Polarization: 2.06 SS G_CDS: -1.53 Total: 0.53 kcal Atomic # 7 Polarization: -45.34 SS G_CDS: 0.24 Total: -45.10 kcal Atomic # 8 Polarization: -19.66 SS G_CDS: 0.22 Total: -19.44 kcal Atomic # 14 Polarization: 20.85 SS G_CDS: -5.02 Total: 15.83 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -31.79 -6.26 -38.05 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273451928.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.401 kcal (2) G-P(sol) polarization free energy of solvation -31.792 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.609 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.262 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.054 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.347 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds