Wall clock time and date at job start Tue Mar 31 2020 13:56:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52989 * 1 3 3 C 1.52999 * 109.47454 * 2 1 4 4 C 1.50703 * 109.47386 * 180.02562 * 3 2 1 5 5 N 1.29934 * 125.37903 * 90.00254 * 4 3 2 6 6 C 1.36067 * 108.47889 * 179.97438 * 5 4 3 7 7 C 1.47414 * 126.44826 * 179.97438 * 6 5 4 8 8 O 1.21611 * 119.99684 * 173.68238 * 7 6 5 9 9 N 1.34776 * 120.00301 * 353.68143 * 7 6 5 10 10 C 1.46498 * 119.99806 * 3.85736 * 9 7 6 11 11 C 1.50701 * 109.46999 * 83.37352 * 10 9 7 12 12 H 1.07999 * 120.00251 * 0.02562 * 11 10 9 13 13 C 1.37882 * 119.99896 * 179.97438 * 11 10 9 14 14 N 1.31515 * 120.00022 * 0.02562 * 13 11 10 15 15 Si 1.86806 * 119.99941 * 180.02562 * 13 11 10 16 16 H 1.48494 * 109.47149 * 60.00177 * 15 13 11 17 17 H 1.48502 * 109.46993 * 180.02562 * 15 13 11 18 18 H 1.48495 * 109.46805 * 299.99795 * 15 13 11 19 19 C 1.46503 * 120.00089 * 183.85059 * 9 7 6 20 20 C 1.50699 * 109.46648 * 90.00293 * 19 9 7 21 21 C 1.34515 * 125.78894 * 89.71480 * 20 19 9 22 22 C 1.41377 * 106.84549 * 179.88949 * 21 20 19 23 23 C 1.34517 * 106.83947 * 0.37181 * 22 21 20 24 24 O 1.34297 * 125.79343 * 270.02546 * 20 19 9 25 25 C 1.36100 * 107.09970 * 359.97438 * 6 5 4 26 26 O 1.34053 * 125.37641 * 269.69432 * 4 3 2 27 27 H 1.08999 * 109.47317 * 179.97438 * 1 2 3 28 28 H 1.09007 * 109.47026 * 300.00318 * 1 2 3 29 29 H 1.08999 * 109.47352 * 59.99609 * 1 2 3 30 30 H 1.09006 * 109.47466 * 239.99975 * 2 1 3 31 31 H 1.08999 * 109.47352 * 120.00391 * 2 1 3 32 32 H 1.09006 * 109.47032 * 60.00321 * 3 2 1 33 33 H 1.08999 * 109.47160 * 300.00508 * 3 2 1 34 34 H 1.08996 * 109.47023 * 203.37311 * 10 9 7 35 35 H 1.09003 * 109.47351 * 323.37787 * 10 9 7 36 36 H 0.97002 * 119.99931 * 180.02562 * 14 13 11 37 37 H 1.08997 * 109.47306 * 210.00123 * 19 9 7 38 38 H 1.08998 * 109.47399 * 330.00918 * 19 9 7 39 39 H 1.08006 * 126.58170 * 0.02693 * 21 20 19 40 40 H 1.08000 * 126.58606 * 180.16546 * 22 21 20 41 41 H 1.08000 * 125.79347 * 179.75231 * 23 22 21 42 42 H 1.07997 * 126.51909 * 180.02562 * 25 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5470 1.4424 -0.0006 5 7 4.2989 1.4426 -1.0604 6 6 5.6009 1.4431 -0.6654 7 6 6.7832 1.4430 -1.5458 8 8 7.8961 1.5593 -1.0695 9 7 6.6309 1.3138 -2.8787 10 6 5.2875 1.2586 -3.4604 11 6 4.7627 2.6590 -3.6465 12 1 5.3694 3.5055 -3.3605 13 6 3.5085 2.8596 -4.1829 14 7 2.7699 1.8288 -4.5317 15 14 2.8583 4.5955 -4.4142 16 1 3.7615 5.3453 -5.3237 17 1 1.4964 4.5395 -5.0038 18 1 2.7997 5.2814 -3.0985 19 6 7.8087 1.2288 -3.7458 20 6 8.2113 -0.2145 -3.9060 21 6 7.7685 -1.0536 -4.8595 22 6 8.4024 -2.2976 -4.6373 23 6 9.1884 -2.1467 -3.5561 24 8 9.0686 -0.8830 -3.1174 25 6 5.6062 1.4438 0.6956 26 8 4.3236 1.4481 1.0920 27 1 -0.3634 -1.0276 -0.0005 28 1 -0.3633 0.5139 0.8900 29 1 -0.3634 0.5139 -0.8899 30 1 1.8933 -0.5139 -0.8900 31 1 1.8933 -0.5139 0.8899 32 1 1.6767 1.9563 0.8901 33 1 1.6766 1.9563 -0.8899 34 1 5.3302 0.7553 -4.4263 35 1 4.6247 0.7080 -2.7928 36 1 1.8877 1.9699 -4.9094 37 1 7.5720 1.6505 -4.7226 38 1 8.6305 1.7877 -3.2982 39 1 7.0653 -0.8210 -5.6457 40 1 8.2768 -3.1974 -5.2211 41 1 9.8101 -2.9120 -3.1154 42 1 6.4767 1.4447 1.3349 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000273451928.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:56:01 Heat of formation + Delta-G solvation = -9.939188 kcal Electronic energy + Delta-G solvation = -27182.885897 eV Core-core repulsion = 23324.276176 eV Total energy + Delta-G solvation = -3858.609721 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -44.29293 -43.47301 -40.57557 -37.00070 -36.25837 -35.54238 -34.54163 -33.86280 -31.97940 -31.31792 -29.06623 -28.08875 -27.23845 -25.16589 -24.08642 -23.16430 -22.62236 -22.07944 -21.43978 -20.45399 -18.78836 -18.49057 -18.00608 -17.69596 -17.52451 -17.30656 -16.57517 -16.33259 -16.07462 -15.91512 -15.61805 -15.20127 -14.70173 -14.39409 -14.24458 -14.12132 -13.88974 -13.72518 -13.58907 -13.39865 -12.99011 -12.97742 -12.72619 -12.66182 -12.55068 -12.27432 -12.09763 -11.95583 -11.69999 -11.59509 -11.28806 -10.94535 -10.83279 -10.35723 -9.97574 -9.58234 -9.41097 -8.02996 -6.10015 0.17095 0.71385 1.17433 1.41852 1.42837 1.49741 1.64994 1.71249 2.08280 2.27776 2.44289 2.50857 3.06037 3.29313 3.66331 3.84051 3.88831 4.08966 4.10126 4.14583 4.15346 4.32906 4.37973 4.51963 4.60151 4.73797 4.74376 4.84172 4.88032 4.92789 4.95987 5.01370 5.06951 5.17963 5.26460 5.32342 5.45456 5.51144 5.61369 5.84772 5.87851 6.22119 6.25902 6.43886 6.72140 6.95917 7.16910 7.54215 9.04518 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.009885 B = 0.005300 C = 0.004337 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2831.811818 B = 5282.198162 C = 6454.475262 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.113 4.113 3 C -0.017 4.017 4 C 0.175 3.825 5 N -0.431 5.431 6 C -0.097 4.097 7 C 0.593 3.407 8 O -0.580 6.580 9 N -0.581 5.581 10 C 0.251 3.749 11 C -0.513 4.513 12 H 0.034 0.966 13 C 0.038 3.962 14 N -0.910 5.910 15 Si 0.938 3.062 16 H -0.278 1.278 17 H -0.279 1.279 18 H -0.281 1.281 19 C 0.193 3.807 20 C -0.046 4.046 21 C -0.203 4.203 22 C -0.223 4.223 23 C -0.042 4.042 24 O -0.191 6.191 25 C 0.015 3.985 26 O -0.195 6.195 27 H 0.066 0.934 28 H 0.075 0.925 29 H 0.050 0.950 30 H 0.044 0.956 31 H 0.075 0.925 32 H 0.120 0.880 33 H 0.090 0.910 34 H 0.009 0.991 35 H 0.064 0.936 36 H 0.262 0.738 37 H 0.119 0.881 38 H 0.090 0.910 39 H 0.148 0.852 40 H 0.174 0.826 41 H 0.242 0.758 42 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.290 -6.610 7.661 10.200 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.151 4.151 3 C -0.055 4.055 4 C -0.034 4.034 5 N -0.159 5.159 6 C -0.217 4.217 7 C 0.382 3.618 8 O -0.463 6.463 9 N -0.310 5.310 10 C 0.131 3.869 11 C -0.552 4.552 12 H 0.052 0.948 13 C -0.162 4.162 14 N -0.549 5.549 15 Si 0.765 3.235 16 H -0.203 1.203 17 H -0.204 1.204 18 H -0.207 1.207 19 C 0.071 3.929 20 C -0.097 4.097 21 C -0.224 4.224 22 C -0.242 4.242 23 C -0.109 4.109 24 O -0.087 6.087 25 C -0.059 4.059 26 O -0.082 6.082 27 H 0.085 0.915 28 H 0.094 0.906 29 H 0.069 0.931 30 H 0.063 0.937 31 H 0.094 0.906 32 H 0.138 0.862 33 H 0.109 0.891 34 H 0.027 0.973 35 H 0.081 0.919 36 H 0.071 0.929 37 H 0.137 0.863 38 H 0.108 0.892 39 H 0.166 0.834 40 H 0.192 0.808 41 H 0.258 0.742 42 H 0.274 0.726 Dipole moment (debyes) X Y Z Total from point charges 1.561 -6.450 7.405 9.944 hybrid contribution -0.083 0.911 -0.162 0.929 sum 1.479 -5.539 7.243 9.238 Atomic orbital electron populations 1.21703 0.93056 1.02753 1.02596 1.21449 0.97768 0.93819 1.02101 1.20302 0.79163 1.00398 1.05636 1.27218 0.97590 1.00593 0.78047 1.71494 1.00590 1.15049 1.28739 1.21820 0.92451 1.13761 0.93641 1.17149 0.86382 0.75940 0.82327 1.90684 1.25549 1.54117 1.75942 1.48200 1.09098 1.68390 1.05282 1.19517 0.76834 0.97131 0.93377 1.21220 1.01041 0.91911 1.41037 0.94777 1.25268 0.96451 0.99227 0.95289 1.70006 1.10978 1.30685 1.43250 0.85948 0.77763 0.81807 0.78012 1.20320 1.20366 1.20680 1.19788 0.88464 0.87875 0.96818 1.22957 0.96414 0.96619 0.93686 1.21896 1.04039 0.94295 1.02131 1.22149 1.01471 0.99509 1.01064 1.24908 1.03755 0.84607 0.97631 1.84069 1.52323 1.23300 1.48998 1.25638 0.85633 0.99780 0.94835 1.84347 1.16300 1.69527 1.37979 0.91474 0.90624 0.93118 0.93681 0.90644 0.86162 0.89146 0.97252 0.91873 0.92891 0.86329 0.89207 0.83448 0.80813 0.74238 0.72609 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.84 9.91 71.98 0.71 -2.12 16 2 C -0.11 -2.83 5.92 30.59 0.18 -2.65 16 3 C -0.02 -0.48 5.84 29.85 0.17 -0.31 16 4 C 0.17 6.29 7.56 88.39 0.67 6.96 16 5 N -0.43 -19.16 7.13 -293.03 -2.09 -21.25 16 6 C -0.10 -4.16 6.64 40.41 0.27 -3.89 16 7 C 0.59 27.44 7.60 86.66 0.66 28.10 16 8 O -0.58 -27.28 16.45 -4.06 -0.07 -27.34 16 9 N -0.58 -26.90 2.46 -834.41 -2.05 -28.95 16 10 C 0.25 12.90 4.77 85.63 0.41 13.31 16 11 C -0.51 -27.96 8.36 25.60 0.21 -27.75 16 12 H 0.03 1.93 7.81 -2.91 -0.02 1.91 16 13 C 0.04 2.03 5.46 84.66 0.46 2.49 16 14 N -0.91 -50.44 13.29 21.45 0.28 -50.15 16 15 Si 0.94 43.11 29.54 68.60 2.03 45.14 16 16 H -0.28 -12.63 7.11 99.48 0.71 -11.92 16 17 H -0.28 -12.33 7.11 99.48 0.71 -11.62 16 18 H -0.28 -12.91 7.11 99.48 0.71 -12.20 16 19 C 0.19 7.74 5.94 85.63 0.51 8.25 16 20 C -0.05 -1.73 6.90 24.83 0.17 -1.56 16 21 C -0.20 -6.99 10.81 22.19 0.24 -6.75 16 22 C -0.22 -6.21 10.91 22.19 0.24 -5.97 16 23 C -0.04 -1.12 12.09 66.97 0.81 -0.31 16 24 O -0.19 -6.89 10.65 -2.49 -0.03 -6.92 16 25 C 0.02 0.51 11.95 67.32 0.80 1.32 16 26 O -0.19 -6.25 10.73 0.38 0.00 -6.24 16 27 H 0.07 1.18 8.14 -2.39 -0.02 1.16 16 28 H 0.07 1.17 8.14 -2.38 -0.02 1.15 16 29 H 0.05 1.10 8.14 -2.39 -0.02 1.08 16 30 H 0.04 1.40 8.14 -2.38 -0.02 1.38 16 31 H 0.07 1.67 8.14 -2.39 -0.02 1.65 16 32 H 0.12 2.50 8.14 -2.38 -0.02 2.48 16 33 H 0.09 2.95 8.14 -2.39 -0.02 2.93 16 34 H 0.01 0.51 8.02 -2.39 -0.02 0.49 16 35 H 0.06 3.48 5.33 -2.39 -0.01 3.47 16 36 H 0.26 13.84 8.31 -92.71 -0.77 13.07 16 37 H 0.12 4.45 8.07 -2.39 -0.02 4.43 16 38 H 0.09 3.54 7.37 -2.39 -0.02 3.52 16 39 H 0.15 4.98 8.06 -2.91 -0.02 4.95 16 40 H 0.17 3.65 8.06 -2.91 -0.02 3.63 16 41 H 0.24 3.92 8.06 -2.91 -0.02 3.90 16 42 H 0.26 6.34 8.06 -2.91 -0.02 6.32 16 Total: -1.00 -70.46 366.35 5.63 -64.82 By element: Atomic # 1 Polarization: 20.74 SS G_CDS: 1.03 Total: 21.77 kcal Atomic # 6 Polarization: 2.59 SS G_CDS: 6.52 Total: 9.11 kcal Atomic # 7 Polarization: -96.49 SS G_CDS: -3.86 Total: -100.35 kcal Atomic # 8 Polarization: -40.41 SS G_CDS: -0.09 Total: -40.50 kcal Atomic # 14 Polarization: 43.11 SS G_CDS: 2.03 Total: 45.14 kcal Total: -70.46 5.63 -64.82 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273451928.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.884 kcal (2) G-P(sol) polarization free energy of solvation -70.458 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.574 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.635 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.824 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.939 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds