Wall clock time and date at job start Tue Mar 31 2020 12:32:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86803 * 119.99879 * 2 1 4 4 H 1.48496 * 109.47191 * 179.97438 * 3 2 1 5 5 H 1.48508 * 109.47055 * 299.99393 * 3 2 1 6 6 H 1.48498 * 109.47283 * 59.99469 * 3 2 1 7 7 C 1.37876 * 120.00351 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00449 * 180.02562 * 7 2 1 9 9 C 1.50699 * 119.99570 * 359.97438 * 7 2 1 10 10 C 1.53004 * 109.46843 * 179.97438 * 9 7 2 11 11 N 1.46504 * 109.46928 * 180.02562 * 10 9 7 12 12 C 1.34777 * 119.99854 * 179.97438 * 11 10 9 13 13 O 1.21593 * 119.99953 * 0.02562 * 12 11 10 14 14 N 1.34773 * 120.00097 * 180.27545 * 12 11 10 15 15 C 1.46506 * 119.99968 * 359.73201 * 14 12 11 16 16 C 1.50699 * 109.47356 * 89.99803 * 15 14 12 17 17 C 1.34514 * 125.79125 * 90.00093 * 16 15 14 18 18 C 1.41383 * 106.83768 * 180.02562 * 17 16 15 19 19 C 1.34510 * 106.84262 * 359.97438 * 18 17 16 20 20 O 1.34303 * 125.78537 * 269.69273 * 16 15 14 21 21 C 1.46500 * 120.00431 * 179.72742 * 14 12 11 22 22 C 1.50697 * 109.47087 * 89.99931 * 21 14 12 23 23 C 1.34511 * 125.78776 * 90.00528 * 22 21 14 24 24 C 1.41383 * 106.84064 * 179.97438 * 23 22 21 25 25 C 1.34516 * 106.84111 * 0.02562 * 24 23 22 26 26 O 1.34304 * 125.78871 * 269.69478 * 22 21 14 27 27 H 0.96996 * 120.00389 * 0.02562 * 1 2 3 28 28 H 1.09007 * 109.47199 * 60.00717 * 9 7 2 29 29 H 1.08997 * 109.47846 * 300.00091 * 9 7 2 30 30 H 1.08998 * 109.47202 * 60.00416 * 10 9 7 31 31 H 1.08997 * 109.47419 * 300.00314 * 10 9 7 32 32 H 0.97000 * 120.00410 * 0.02562 * 11 10 9 33 33 H 1.09003 * 109.47017 * 209.99823 * 15 14 12 34 34 H 1.09002 * 109.46900 * 329.99415 * 15 14 12 35 35 H 1.07998 * 126.57829 * 0.03438 * 17 16 15 36 36 H 1.07996 * 126.57620 * 179.97438 * 18 17 16 37 37 H 1.08005 * 125.78896 * 179.97438 * 19 18 17 38 38 H 1.08999 * 109.47653 * 210.00798 * 21 14 12 39 39 H 1.09006 * 109.46908 * 330.00208 * 21 14 12 40 40 H 1.08000 * 126.58052 * 0.03358 * 23 22 21 41 41 H 1.08003 * 126.58125 * 179.97438 * 24 23 22 42 42 H 1.07997 * 125.78867 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3465 0.0006 5 1 1.8904 2.3964 -1.2126 6 1 1.8903 2.3965 1.2124 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0017 10 6 2.2454 -3.6620 0.0015 11 7 1.5129 -4.9308 0.0020 12 6 2.1868 -6.0979 0.0013 13 8 3.4027 -6.0979 0.0008 14 7 1.5130 -7.2651 -0.0038 15 6 0.0479 -7.2652 -0.0028 16 6 -0.4555 -7.2583 -1.4232 17 6 -0.7182 -8.3459 -2.1699 18 6 -1.1643 -7.8806 -3.4283 19 6 -1.1481 -6.5366 -3.3750 20 8 -0.7234 -6.1653 -2.1562 21 6 2.2454 -8.5339 -0.0105 22 6 2.4977 -8.9757 1.4079 23 6 1.6845 -9.7520 2.1464 24 6 2.3061 -9.9151 3.4057 25 6 3.4619 -9.2282 3.3616 26 8 3.5754 -8.6661 2.1472 27 1 -0.4850 0.8400 -0.0004 28 1 0.6241 -2.5575 -0.8881 29 1 0.6247 -2.5563 0.8919 30 1 2.8727 -3.6039 0.8909 31 1 2.8714 -3.6046 -0.8890 32 1 0.5429 -4.9308 0.0020 33 1 -0.3150 -8.1577 0.5070 34 1 -0.3151 -6.3777 0.5157 35 1 -0.6094 -9.3766 -1.8664 36 1 -1.4612 -8.4877 -4.2706 37 1 -1.4321 -5.8693 -4.1753 38 1 1.6561 -9.2910 -0.5277 39 1 3.1975 -8.4010 -0.5245 40 1 0.7386 -10.1712 1.8365 41 1 1.9257 -10.4817 4.2428 42 1 4.1790 -9.1464 4.1650 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000273600758.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:32:37 Heat of formation + Delta-G solvation = -13.795091 kcal Electronic energy + Delta-G solvation = -26401.468331 eV Core-core repulsion = 22542.691406 eV Total energy + Delta-G solvation = -3858.776926 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -43.51134 -43.38327 -41.21874 -37.33669 -36.59843 -34.88706 -33.92334 -33.82693 -32.52456 -31.55532 -30.47808 -27.57029 -27.05958 -25.79315 -23.07139 -22.65271 -22.55462 -21.96729 -21.55433 -20.82108 -19.32649 -18.65089 -18.48677 -17.91468 -17.75377 -16.87495 -16.75261 -16.62862 -16.49613 -15.79967 -15.41291 -15.35784 -15.20132 -14.69052 -14.30186 -14.12245 -13.88449 -13.65070 -13.62884 -13.51989 -13.49585 -13.24768 -12.96853 -12.80548 -12.67187 -12.51728 -12.27571 -11.70048 -11.51306 -11.25237 -10.79181 -10.78302 -10.62064 -10.34877 -9.83513 -9.51006 -9.33302 -8.24587 -6.35366 0.56922 0.86963 1.40566 1.41029 1.53889 1.56836 1.77169 1.93102 1.97235 2.17707 2.36660 2.40654 2.97961 3.09858 3.68542 3.85067 3.94331 4.04519 4.19236 4.20815 4.30516 4.34073 4.40427 4.46837 4.46936 4.58227 4.81735 4.93891 4.95189 5.03269 5.03877 5.21562 5.22453 5.26577 5.31648 5.47155 5.55674 5.64480 5.69238 5.72153 5.80002 6.15133 6.27988 6.31239 6.77048 6.86215 7.33862 7.46109 8.87676 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.010513 B = 0.003744 C = 0.002920 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2662.631020 B = 7476.130839 C = 9586.966463 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.926 5.926 2 C 0.008 3.992 3 Si 0.966 3.034 4 H -0.266 1.266 5 H -0.275 1.275 6 H -0.275 1.275 7 C -0.546 4.546 8 H 0.058 0.942 9 C 0.028 3.972 10 C 0.160 3.840 11 N -0.730 5.730 12 C 0.699 3.301 13 O -0.626 6.626 14 N -0.614 5.614 15 C 0.188 3.812 16 C -0.062 4.062 17 C -0.184 4.184 18 C -0.223 4.223 19 C -0.049 4.049 20 O -0.199 6.199 21 C 0.211 3.789 22 C -0.054 4.054 23 C -0.189 4.189 24 C -0.224 4.224 25 C -0.054 4.054 26 O -0.201 6.201 27 H 0.266 0.734 28 H 0.006 0.994 29 H 0.007 0.993 30 H 0.043 0.957 31 H 0.041 0.959 32 H 0.402 0.598 33 H 0.157 0.843 34 H 0.086 0.914 35 H 0.179 0.821 36 H 0.171 0.829 37 H 0.218 0.782 38 H 0.153 0.847 39 H 0.077 0.923 40 H 0.180 0.820 41 H 0.172 0.828 42 H 0.222 0.778 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.292 -24.647 0.011 25.018 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.565 5.565 2 C -0.190 4.190 3 Si 0.791 3.209 4 H -0.190 1.190 5 H -0.201 1.201 6 H -0.201 1.201 7 C -0.584 4.584 8 H 0.076 0.924 9 C -0.010 4.010 10 C 0.036 3.964 11 N -0.385 5.385 12 C 0.400 3.600 13 O -0.507 6.507 14 N -0.349 5.349 15 C 0.066 3.934 16 C -0.113 4.113 17 C -0.204 4.204 18 C -0.242 4.242 19 C -0.117 4.117 20 O -0.095 6.095 21 C 0.088 3.912 22 C -0.106 4.106 23 C -0.209 4.209 24 C -0.243 4.243 25 C -0.122 4.122 26 O -0.097 6.097 27 H 0.075 0.925 28 H 0.024 0.976 29 H 0.025 0.975 30 H 0.062 0.938 31 H 0.060 0.940 32 H 0.239 0.761 33 H 0.174 0.826 34 H 0.104 0.896 35 H 0.196 0.804 36 H 0.188 0.812 37 H 0.235 0.765 38 H 0.171 0.829 39 H 0.095 0.905 40 H 0.197 0.803 41 H 0.189 0.811 42 H 0.239 0.761 Dipole moment (debyes) X Y Z Total from point charges -3.271 -24.029 0.012 24.251 hybrid contribution -0.175 1.040 -0.048 1.056 sum -3.447 -22.989 -0.036 23.246 Atomic orbital electron populations 1.70070 1.07542 1.27953 1.50938 1.25870 0.95802 1.03064 0.94300 0.85378 0.78919 0.78652 0.77979 1.19040 1.20090 1.20078 1.21460 0.93541 0.91798 1.51647 0.92360 1.19090 0.94090 0.91685 0.96120 1.21090 0.94658 0.81183 0.99446 1.45394 1.10257 1.04616 1.78274 1.16195 0.85017 0.81344 0.77420 1.90877 1.13403 1.86828 1.59619 1.47286 1.06142 1.03952 1.77556 1.20148 0.78209 1.07066 0.87954 1.23190 1.06620 0.84864 0.96601 1.21968 1.04549 1.00123 0.93783 1.22188 1.07373 0.94461 1.00208 1.24710 1.02965 0.97562 0.86428 1.84092 1.65325 1.36212 1.23911 1.19851 0.98724 0.84585 0.87992 1.23233 0.88107 1.02632 0.96582 1.21993 1.02283 1.02657 0.93965 1.22213 0.96492 1.05493 1.00129 1.24781 1.01821 0.98844 0.86721 1.84130 1.41337 1.60313 1.23937 0.92505 0.97591 0.97499 0.93841 0.94015 0.76124 0.82589 0.89556 0.80370 0.81197 0.76540 0.82910 0.90468 0.80271 0.81060 0.76117 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.17 13.29 21.45 0.28 -54.89 16 2 C 0.01 0.48 5.46 84.65 0.46 0.95 16 3 Si 0.97 44.48 29.54 68.60 2.03 46.50 16 4 H -0.27 -11.94 7.11 99.48 0.71 -11.23 16 5 H -0.28 -12.26 7.11 99.48 0.71 -11.55 16 6 H -0.28 -12.25 7.11 99.48 0.71 -11.54 16 7 C -0.55 -31.54 9.11 25.60 0.23 -31.31 16 8 H 0.06 3.31 7.74 -2.91 -0.02 3.29 16 9 C 0.03 1.47 5.09 29.85 0.15 1.62 16 10 C 0.16 7.53 5.61 86.38 0.48 8.01 16 11 N -0.73 -28.75 5.42 -478.52 -2.59 -31.34 16 12 C 0.70 26.55 8.28 179.06 1.48 28.04 16 13 O -0.63 -29.04 15.92 -4.01 -0.06 -29.10 16 14 N -0.61 -16.22 2.44 -848.55 -2.07 -18.29 16 15 C 0.19 3.69 5.70 85.63 0.49 4.17 16 16 C -0.06 -1.35 6.90 24.83 0.17 -1.18 16 17 C -0.18 -3.14 10.81 22.19 0.24 -2.90 16 18 C -0.22 -4.00 10.91 22.19 0.24 -3.76 16 19 C -0.05 -1.07 12.09 66.97 0.81 -0.26 16 20 O -0.20 -5.51 10.65 -2.49 -0.03 -5.54 16 21 C 0.21 4.62 5.94 85.63 0.51 5.13 16 22 C -0.05 -1.28 6.90 24.83 0.17 -1.11 16 23 C -0.19 -3.30 10.81 22.19 0.24 -3.06 16 24 C -0.22 -3.97 10.91 22.19 0.24 -3.73 16 25 C -0.05 -1.14 12.09 66.97 0.81 -0.33 16 26 O -0.20 -5.86 10.65 -2.53 -0.03 -5.89 16 27 H 0.27 14.81 8.31 -92.71 -0.77 14.04 16 28 H 0.01 0.32 8.14 -2.38 -0.02 0.30 16 29 H 0.01 0.37 8.14 -2.39 -0.02 0.35 16 30 H 0.04 2.12 8.14 -2.39 -0.02 2.10 16 31 H 0.04 2.04 8.14 -2.39 -0.02 2.02 16 32 H 0.40 14.34 6.21 -92.71 -0.58 13.76 16 33 H 0.16 1.66 8.07 -2.39 -0.02 1.64 16 34 H 0.09 1.86 6.37 -2.39 -0.02 1.84 16 35 H 0.18 1.73 8.06 -2.91 -0.02 1.71 16 36 H 0.17 2.11 8.06 -2.91 -0.02 2.08 16 37 H 0.22 3.52 8.06 -2.91 -0.02 3.50 16 38 H 0.15 1.84 8.07 -2.39 -0.02 1.82 16 39 H 0.08 2.10 7.42 -2.38 -0.02 2.08 16 40 H 0.18 1.77 8.06 -2.91 -0.02 1.75 16 41 H 0.17 2.03 8.06 -2.91 -0.02 2.01 16 42 H 0.22 3.13 8.06 -2.91 -0.02 3.11 16 Total: -1.00 -79.91 368.93 4.73 -75.18 By element: Atomic # 1 Polarization: 22.61 SS G_CDS: 0.46 Total: 23.08 kcal Atomic # 6 Polarization: -6.44 SS G_CDS: 6.74 Total: 0.29 kcal Atomic # 7 Polarization: -100.14 SS G_CDS: -4.38 Total: -104.52 kcal Atomic # 8 Polarization: -40.41 SS G_CDS: -0.12 Total: -40.53 kcal Atomic # 14 Polarization: 44.48 SS G_CDS: 2.03 Total: 46.50 kcal Total: -79.91 4.73 -75.18 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273600758.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.385 kcal (2) G-P(sol) polarization free energy of solvation -79.908 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.523 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.727 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.180 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.795 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds