Wall clock time and date at job start Tue Mar 31 2020 12:10:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30633 * 1 3 3 Si 1.86796 * 120.00149 * 2 1 4 4 H 1.48494 * 109.47447 * 240.00140 * 3 2 1 5 5 H 1.48501 * 109.47008 * 359.97438 * 3 2 1 6 6 H 1.48501 * 109.47390 * 119.99698 * 3 2 1 7 7 C 1.40133 * 120.00310 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00075 * 179.97438 * 7 2 1 9 9 C 1.46164 * 119.99508 * 359.97438 * 7 2 1 10 10 O 1.21740 * 120.00345 * 0.02562 * 9 7 2 11 11 N 1.34776 * 119.99732 * 180.02562 * 9 7 2 12 12 C 1.39521 * 120.00009 * 184.60917 * 11 9 7 13 13 C 1.39099 * 120.05438 * 144.88609 * 12 11 9 14 14 C 1.38073 * 120.02342 * 179.97438 * 13 12 11 15 15 C 1.38259 * 120.13698 * 0.26688 * 14 13 12 16 16 C 1.38832 * 120.10673 * 359.45477 * 15 14 13 17 17 O 1.35901 * 120.01096 * 180.26995 * 16 15 14 18 18 C 1.42900 * 117.00056 * 0.28018 * 17 16 15 19 19 C 1.50692 * 109.47103 * 180.02562 * 18 17 16 20 20 O 1.21280 * 120.00377 * 359.97438 * 19 18 17 21 21 N 1.34779 * 120.00013 * 180.02562 * 19 18 17 22 22 C 1.47015 * 125.64775 * 359.68862 * 21 19 18 23 23 C 1.54320 * 107.27517 * 180.97161 * 22 21 19 24 24 C 1.55150 * 102.86506 * 22.52457 * 23 22 21 25 25 C 1.47429 * 125.64680 * 179.97438 * 21 19 18 26 26 C 1.38564 * 119.97539 * 0.55052 * 16 15 14 27 27 H 0.96998 * 120.00357 * 0.02562 * 1 2 3 28 28 H 0.97001 * 120.00159 * 4.60328 * 11 9 7 29 29 H 1.07997 * 119.98823 * 359.94851 * 13 12 11 30 30 H 1.07999 * 119.93112 * 179.97438 * 14 13 12 31 31 H 1.08004 * 119.94524 * 179.70311 * 15 14 13 32 32 H 1.09010 * 109.46828 * 299.99761 * 18 17 16 33 33 H 1.08996 * 109.47449 * 59.99619 * 18 17 16 34 34 H 1.09004 * 109.88486 * 300.51185 * 22 21 19 35 35 H 1.08997 * 109.88611 * 61.68336 * 22 21 19 36 36 H 1.09000 * 110.92250 * 264.10885 * 23 22 21 37 37 H 1.09007 * 110.59222 * 140.78428 * 23 22 21 38 38 H 1.09001 * 111.00239 * 206.23475 * 24 23 22 39 39 H 1.08996 * 111.00815 * 82.37645 * 24 23 22 40 40 H 1.09004 * 110.36718 * 274.67006 * 25 21 19 41 41 H 1.08997 * 110.36663 * 36.88462 * 25 21 19 42 42 H 1.08001 * 120.07257 * 179.74990 * 26 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3063 0.0000 0.0000 3 14 2.2404 1.6177 0.0000 4 1 3.0941 1.6964 -1.2124 5 1 1.2754 2.7464 -0.0006 6 1 3.0941 1.6964 1.2125 7 6 2.0071 -1.2136 -0.0005 8 1 3.0870 -1.2135 -0.0010 9 6 1.2762 -2.4793 -0.0005 10 8 0.0588 -2.4794 -0.0005 11 7 1.9501 -3.6465 -0.0005 12 6 1.2559 -4.8529 -0.0976 13 6 1.8090 -5.9206 -0.7968 14 6 1.1217 -7.1143 -0.8921 15 6 -0.1194 -7.2500 -0.2981 16 6 -0.6741 -6.1898 0.4060 17 8 -1.8918 -6.3271 0.9937 18 6 -2.5417 -7.5919 0.8518 19 6 -3.8699 -7.5566 1.5628 20 8 -4.2248 -6.5480 2.1352 21 7 -4.6630 -8.6464 1.5636 22 6 -4.3601 -9.9270 0.9081 23 6 -5.5614 -10.8636 1.1551 24 6 -6.7188 -9.8719 1.4449 25 6 -5.9806 -8.7496 2.2169 26 6 0.0116 -4.9898 0.5043 27 1 -0.4850 0.8400 -0.0004 28 1 2.9178 -3.6479 0.0669 29 1 2.7762 -5.8157 -1.2657 30 1 1.5524 -7.9422 -1.4357 31 1 -0.6565 -8.1836 -0.3786 32 1 -2.7017 -7.8015 -0.2059 33 1 -1.9171 -8.3722 1.2864 34 1 -4.2222 -9.7722 -0.1620 35 1 -3.4589 -10.3611 1.3412 36 1 -5.3817 -11.5086 2.0152 37 1 -5.7749 -11.4561 0.2653 38 1 -7.4841 -10.3357 2.0673 39 1 -7.1486 -9.4915 0.5183 40 1 -5.8637 -9.0238 3.2654 41 1 -6.5220 -7.8077 2.1299 42 1 -0.4203 -4.1627 1.0483 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000274253558.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:10:45 Heat of formation + Delta-G solvation = -74.815088 kcal Electronic energy + Delta-G solvation = -25551.652573 eV Core-core repulsion = 21690.229622 eV Total energy + Delta-G solvation = -3861.422951 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.43578 -39.58825 -38.24716 -37.37292 -36.19705 -33.26683 -32.38020 -32.23442 -30.34015 -29.51482 -28.75021 -27.78258 -26.18120 -23.84945 -22.44689 -21.80977 -21.45195 -20.04615 -19.35035 -18.18092 -17.33479 -17.11573 -16.85319 -16.16117 -15.79931 -15.44753 -15.39437 -15.02938 -14.51992 -14.22683 -14.03234 -13.84915 -13.67746 -13.40017 -12.99457 -12.71155 -12.65931 -12.44722 -12.35131 -11.99139 -11.81341 -11.64485 -11.39963 -11.23033 -11.22232 -11.08123 -10.84001 -10.72761 -10.53792 -10.34199 -9.89492 -9.25960 -8.95704 -8.84574 -7.91314 -7.59502 -7.15944 -6.29872 -4.78553 1.94448 2.00358 2.37464 2.44288 3.12016 3.16845 3.19047 3.56515 4.01737 4.07300 4.11646 4.24781 4.43249 4.52073 4.55060 4.69895 4.80872 4.86674 4.94495 4.99612 5.15835 5.26086 5.28185 5.40270 5.45080 5.46153 5.53261 5.65325 5.70233 5.72812 5.89258 5.99053 6.15451 6.51493 6.80119 6.86336 7.02372 7.16096 7.19031 7.32368 7.75114 7.79899 7.99303 8.08601 8.18981 8.88422 9.24067 10.42469 10.60933 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.020549 B = 0.002536 C = 0.002286 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1362.261412 B =11037.248349 C =12247.228809 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.757 5.757 2 C 0.085 3.915 3 Si 0.914 3.086 4 H -0.267 1.267 5 H -0.279 1.279 6 H -0.266 1.266 7 C -0.538 4.538 8 H 0.072 0.928 9 C 0.540 3.460 10 O -0.554 6.554 11 N -0.698 5.698 12 C 0.227 3.773 13 C -0.206 4.206 14 C -0.065 4.065 15 C -0.255 4.255 16 C 0.140 3.860 17 O -0.289 6.289 18 C 0.051 3.949 19 C 0.530 3.470 20 O -0.507 6.507 21 N -0.624 5.624 22 C 0.094 3.906 23 C -0.131 4.131 24 C -0.134 4.134 25 C 0.106 3.894 26 C -0.157 4.157 27 H 0.273 0.727 28 H 0.395 0.605 29 H 0.119 0.881 30 H 0.118 0.882 31 H 0.115 0.885 32 H 0.089 0.911 33 H 0.089 0.911 34 H 0.072 0.928 35 H 0.071 0.929 36 H 0.078 0.922 37 H 0.084 0.916 38 H 0.085 0.915 39 H 0.077 0.923 40 H 0.069 0.931 41 H 0.081 0.919 42 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.532 -23.102 0.373 24.011 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.385 5.385 2 C -0.136 4.136 3 Si 0.738 3.262 4 H -0.192 1.192 5 H -0.204 1.204 6 H -0.191 1.191 7 C -0.574 4.574 8 H 0.090 0.910 9 C 0.347 3.653 10 O -0.435 6.435 11 N -0.341 5.341 12 C 0.127 3.873 13 C -0.228 4.228 14 C -0.084 4.084 15 C -0.275 4.275 16 C 0.095 3.905 17 O -0.202 6.202 18 C -0.028 4.028 19 C 0.318 3.682 20 O -0.380 6.380 21 N -0.362 5.362 22 C -0.029 4.029 23 C -0.169 4.169 24 C -0.172 4.172 25 C -0.016 4.016 26 C -0.178 4.178 27 H 0.084 0.916 28 H 0.229 0.771 29 H 0.137 0.863 30 H 0.136 0.864 31 H 0.133 0.867 32 H 0.107 0.893 33 H 0.107 0.893 34 H 0.090 0.910 35 H 0.090 0.910 36 H 0.097 0.903 37 H 0.102 0.898 38 H 0.104 0.896 39 H 0.096 0.904 40 H 0.087 0.913 41 H 0.099 0.901 42 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges -7.807 -22.051 0.799 23.406 hybrid contribution 1.019 0.424 -0.242 1.130 sum -6.788 -21.628 0.557 22.675 Atomic orbital electron populations 1.69976 1.07145 1.27961 1.33417 1.25756 0.94708 1.00524 0.92611 0.86330 0.79765 0.80569 0.79545 1.19163 1.20410 1.19118 1.20796 0.93746 0.88915 1.53976 0.90991 1.18437 0.87572 0.82079 0.77212 1.90657 1.13611 1.85798 1.53449 1.44178 1.09723 1.04139 1.76069 1.17630 0.91856 0.86461 0.91347 1.20844 1.02575 0.94407 1.04977 1.20482 0.93651 0.96610 0.97651 1.20894 0.99484 0.98692 1.08439 1.18831 0.84039 0.94357 0.93280 1.86179 1.30234 1.31985 1.71796 1.22269 0.91987 0.87579 1.00994 1.19874 0.85265 0.82079 0.81007 1.90796 1.73446 1.30584 1.43164 1.48385 1.20129 1.12618 1.55068 1.22131 0.98973 0.83782 0.97990 1.22633 0.94057 0.97277 1.02936 1.22809 0.97450 0.95788 1.01191 1.22243 0.82896 0.99909 0.96530 1.20693 0.96052 0.96365 1.04735 0.91610 0.77110 0.86325 0.86430 0.86669 0.89309 0.89343 0.91010 0.91044 0.90305 0.89770 0.89596 0.90389 0.91271 0.90101 0.82991 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.76 -22.60 11.82 55.55 0.66 -21.95 16 2 C 0.09 2.36 5.50 -17.35 -0.10 2.26 16 3 Si 0.91 19.89 29.56 -169.99 -5.02 14.87 16 4 H -0.27 -5.63 7.11 56.52 0.40 -5.23 16 5 H -0.28 -5.96 7.11 56.52 0.40 -5.56 16 6 H -0.27 -5.63 7.11 56.52 0.40 -5.23 16 7 C -0.54 -14.94 9.54 -35.69 -0.34 -15.28 16 8 H 0.07 1.79 7.85 -52.49 -0.41 1.38 16 9 C 0.54 15.35 7.58 -13.08 -0.10 15.25 16 10 O -0.55 -17.87 12.44 5.15 0.06 -17.81 16 11 N -0.70 -16.04 5.32 -11.21 -0.06 -16.10 16 12 C 0.23 4.91 6.29 -83.79 -0.53 4.39 16 13 C -0.21 -3.60 9.97 -39.32 -0.39 -3.99 16 14 C -0.07 -0.99 10.03 -39.63 -0.40 -1.38 16 15 C -0.26 -4.00 9.04 -39.35 -0.36 -4.36 16 16 C 0.14 2.76 6.68 -39.24 -0.26 2.50 16 17 O -0.29 -5.67 9.67 -39.34 -0.38 -6.05 16 18 C 0.05 0.69 4.41 36.00 0.16 0.85 16 19 C 0.53 7.84 7.93 -10.99 -0.09 7.75 16 20 O -0.51 -10.13 16.75 -14.35 -0.24 -10.38 16 21 N -0.62 -6.49 3.33 -170.51 -0.57 -7.06 16 22 C 0.09 0.59 6.48 -3.07 -0.02 0.57 16 23 C -0.13 -0.56 6.95 -24.90 -0.17 -0.73 16 24 C -0.13 -0.71 7.08 -24.57 -0.17 -0.88 16 25 C 0.11 0.93 6.91 -2.51 -0.02 0.91 16 26 C -0.16 -3.65 8.63 -39.21 -0.34 -3.99 16 27 H 0.27 7.41 8.29 -40.82 -0.34 7.07 16 28 H 0.40 7.64 8.80 -40.82 -0.36 7.28 16 29 H 0.12 1.78 8.06 -52.49 -0.42 1.35 16 30 H 0.12 1.35 8.06 -52.49 -0.42 0.93 16 31 H 0.12 1.37 6.29 -52.48 -0.33 1.04 16 32 H 0.09 0.99 7.65 -51.92 -0.40 0.59 16 33 H 0.09 0.93 7.67 -51.93 -0.40 0.54 16 34 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 35 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 36 H 0.08 0.28 8.14 -51.93 -0.42 -0.14 16 37 H 0.08 0.25 8.14 -51.92 -0.42 -0.18 16 38 H 0.09 0.32 8.14 -51.93 -0.42 -0.10 16 39 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16 40 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 41 H 0.08 0.83 8.03 -51.93 -0.42 0.41 16 42 H 0.15 4.17 6.22 -52.49 -0.33 3.84 16 LS Contribution 357.14 15.07 5.38 5.38 Total: -1.00 -38.29 357.14 -8.87 -47.16 By element: Atomic # 1 Polarization: 13.63 SS G_CDS: -5.58 Total: 8.05 kcal Atomic # 6 Polarization: 6.99 SS G_CDS: -3.12 Total: 3.87 kcal Atomic # 7 Polarization: -45.14 SS G_CDS: 0.03 Total: -45.11 kcal Atomic # 8 Polarization: -33.67 SS G_CDS: -0.56 Total: -34.23 kcal Atomic # 14 Polarization: 19.89 SS G_CDS: -5.02 Total: 14.87 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -38.29 -8.87 -47.16 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000274253558.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.651 kcal (2) G-P(sol) polarization free energy of solvation -38.294 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.945 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.870 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.164 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.815 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds