Wall clock time and date at job start Tue Mar 31 2020 12:10:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30633 * 1 3 3 Si 1.86796 * 120.00149 * 2 1 4 4 H 1.48494 * 109.47447 * 240.00140 * 3 2 1 5 5 H 1.48501 * 109.47008 * 359.97438 * 3 2 1 6 6 H 1.48501 * 109.47390 * 119.99698 * 3 2 1 7 7 C 1.40133 * 120.00310 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00075 * 179.97438 * 7 2 1 9 9 C 1.46164 * 119.99508 * 359.97438 * 7 2 1 10 10 O 1.21740 * 120.00345 * 0.02562 * 9 7 2 11 11 N 1.34776 * 119.99732 * 180.02562 * 9 7 2 12 12 C 1.39521 * 120.00009 * 184.60917 * 11 9 7 13 13 C 1.39099 * 120.05438 * 144.88609 * 12 11 9 14 14 C 1.38073 * 120.02342 * 179.97438 * 13 12 11 15 15 C 1.38259 * 120.13698 * 0.26688 * 14 13 12 16 16 C 1.38832 * 120.10673 * 359.45477 * 15 14 13 17 17 O 1.35901 * 120.01096 * 180.26995 * 16 15 14 18 18 C 1.42900 * 117.00056 * 0.28018 * 17 16 15 19 19 C 1.50692 * 109.47103 * 180.02562 * 18 17 16 20 20 O 1.21280 * 120.00377 * 359.97438 * 19 18 17 21 21 N 1.34779 * 120.00013 * 180.02562 * 19 18 17 22 22 C 1.47015 * 125.64775 * 359.68862 * 21 19 18 23 23 C 1.54320 * 107.27517 * 180.97161 * 22 21 19 24 24 C 1.55150 * 102.86506 * 22.52457 * 23 22 21 25 25 C 1.47429 * 125.64680 * 179.97438 * 21 19 18 26 26 C 1.38564 * 119.97539 * 0.55052 * 16 15 14 27 27 H 0.96998 * 120.00357 * 0.02562 * 1 2 3 28 28 H 0.97001 * 120.00159 * 4.60328 * 11 9 7 29 29 H 1.07997 * 119.98823 * 359.94851 * 13 12 11 30 30 H 1.07999 * 119.93112 * 179.97438 * 14 13 12 31 31 H 1.08004 * 119.94524 * 179.70311 * 15 14 13 32 32 H 1.09010 * 109.46828 * 299.99761 * 18 17 16 33 33 H 1.08996 * 109.47449 * 59.99619 * 18 17 16 34 34 H 1.09004 * 109.88486 * 300.51185 * 22 21 19 35 35 H 1.08997 * 109.88611 * 61.68336 * 22 21 19 36 36 H 1.09000 * 110.92250 * 264.10885 * 23 22 21 37 37 H 1.09007 * 110.59222 * 140.78428 * 23 22 21 38 38 H 1.09001 * 111.00239 * 206.23475 * 24 23 22 39 39 H 1.08996 * 111.00815 * 82.37645 * 24 23 22 40 40 H 1.09004 * 110.36718 * 274.67006 * 25 21 19 41 41 H 1.08997 * 110.36663 * 36.88462 * 25 21 19 42 42 H 1.08001 * 120.07257 * 179.74990 * 26 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3063 0.0000 0.0000 3 14 2.2404 1.6177 0.0000 4 1 3.0941 1.6964 -1.2124 5 1 1.2754 2.7464 -0.0006 6 1 3.0941 1.6964 1.2125 7 6 2.0071 -1.2136 -0.0005 8 1 3.0870 -1.2135 -0.0010 9 6 1.2762 -2.4793 -0.0005 10 8 0.0588 -2.4794 -0.0005 11 7 1.9501 -3.6465 -0.0005 12 6 1.2559 -4.8529 -0.0976 13 6 1.8090 -5.9206 -0.7968 14 6 1.1217 -7.1143 -0.8921 15 6 -0.1194 -7.2500 -0.2981 16 6 -0.6741 -6.1898 0.4060 17 8 -1.8918 -6.3271 0.9937 18 6 -2.5417 -7.5919 0.8518 19 6 -3.8699 -7.5566 1.5628 20 8 -4.2248 -6.5480 2.1352 21 7 -4.6630 -8.6464 1.5636 22 6 -4.3601 -9.9270 0.9081 23 6 -5.5614 -10.8636 1.1551 24 6 -6.7188 -9.8719 1.4449 25 6 -5.9806 -8.7496 2.2169 26 6 0.0116 -4.9898 0.5043 27 1 -0.4850 0.8400 -0.0004 28 1 2.9178 -3.6479 0.0669 29 1 2.7762 -5.8157 -1.2657 30 1 1.5524 -7.9422 -1.4357 31 1 -0.6565 -8.1836 -0.3786 32 1 -2.7017 -7.8015 -0.2059 33 1 -1.9171 -8.3722 1.2864 34 1 -4.2222 -9.7722 -0.1620 35 1 -3.4589 -10.3611 1.3412 36 1 -5.3817 -11.5086 2.0152 37 1 -5.7749 -11.4561 0.2653 38 1 -7.4841 -10.3357 2.0673 39 1 -7.1486 -9.4915 0.5183 40 1 -5.8637 -9.0238 3.2654 41 1 -6.5220 -7.8077 2.1299 42 1 -0.4203 -4.1627 1.0483 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000274253558.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:10:45 Heat of formation + Delta-G solvation = -103.238901 kcal Electronic energy + Delta-G solvation = -25552.885122 eV Core-core repulsion = 21690.229622 eV Total energy + Delta-G solvation = -3862.655500 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.59684 -40.90052 -39.82584 -38.46779 -37.81043 -35.14426 -34.48168 -33.07784 -31.60803 -30.45581 -30.15514 -28.84023 -28.18157 -24.70164 -23.99742 -23.13011 -22.11258 -21.67788 -20.40305 -19.74528 -19.07274 -18.15051 -17.82792 -17.61882 -17.27586 -16.88787 -16.75894 -16.39067 -16.02589 -15.78529 -15.20349 -14.97108 -14.51812 -14.43203 -14.30685 -14.24273 -14.09686 -13.73904 -13.46862 -13.28946 -13.19321 -12.79592 -12.74983 -12.59560 -12.24916 -12.21176 -12.16671 -12.09441 -12.05651 -11.58889 -11.08843 -11.03905 -10.77110 -9.92689 -9.80993 -9.26932 -8.81009 -8.37686 -6.97592 0.48471 0.56639 1.34258 1.37342 1.39432 1.42021 1.54265 2.19355 2.35346 2.46880 2.88991 3.00922 3.30145 3.55351 3.65452 3.77264 3.88809 3.97104 4.06551 4.10499 4.23270 4.30436 4.40927 4.46714 4.52727 4.63605 4.70725 4.83064 4.92875 4.95969 4.97346 5.12399 5.22509 5.22695 5.36070 5.38089 5.49879 5.55213 5.70277 5.78002 6.15059 6.23285 6.32211 6.52532 6.75066 6.94163 7.32879 8.34191 8.55629 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.020549 B = 0.002536 C = 0.002286 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1362.261412 B =11037.248349 C =12247.228809 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.817 5.817 2 C 0.024 3.976 3 Si 1.006 2.994 4 H -0.249 1.249 5 H -0.276 1.276 6 H -0.252 1.252 7 C -0.565 4.565 8 H 0.098 0.902 9 C 0.524 3.476 10 O -0.608 6.608 11 N -0.692 5.692 12 C 0.193 3.807 13 C -0.199 4.199 14 C -0.046 4.046 15 C -0.232 4.232 16 C 0.131 3.869 17 O -0.333 6.333 18 C 0.046 3.954 19 C 0.520 3.480 20 O -0.582 6.582 21 N -0.616 5.616 22 C 0.081 3.919 23 C -0.122 4.122 24 C -0.125 4.125 25 C 0.093 3.907 26 C -0.204 4.204 27 H 0.277 0.723 28 H 0.411 0.589 29 H 0.149 0.851 30 H 0.176 0.824 31 H 0.168 0.832 32 H 0.121 0.879 33 H 0.128 0.872 34 H 0.088 0.912 35 H 0.091 0.909 36 H 0.090 0.910 37 H 0.107 0.893 38 H 0.106 0.894 39 H 0.076 0.924 40 H 0.073 0.927 41 H 0.053 0.947 42 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.544 -27.250 -1.568 27.671 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.446 5.446 2 C -0.192 4.192 3 Si 0.824 3.176 4 H -0.173 1.173 5 H -0.201 1.201 6 H -0.176 1.176 7 C -0.600 4.600 8 H 0.116 0.884 9 C 0.331 3.669 10 O -0.493 6.493 11 N -0.337 5.337 12 C 0.095 3.905 13 C -0.220 4.220 14 C -0.064 4.064 15 C -0.251 4.251 16 C 0.086 3.914 17 O -0.247 6.247 18 C -0.031 4.031 19 C 0.309 3.691 20 O -0.462 6.462 21 N -0.351 5.351 22 C -0.040 4.040 23 C -0.160 4.160 24 C -0.163 4.163 25 C -0.029 4.029 26 C -0.226 4.226 27 H 0.087 0.913 28 H 0.247 0.753 29 H 0.167 0.833 30 H 0.194 0.806 31 H 0.185 0.815 32 H 0.139 0.861 33 H 0.146 0.854 34 H 0.106 0.894 35 H 0.110 0.890 36 H 0.109 0.891 37 H 0.125 0.875 38 H 0.124 0.876 39 H 0.095 0.905 40 H 0.091 0.909 41 H 0.072 0.928 42 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -5.793 -26.339 -1.161 26.993 hybrid contribution 0.289 1.433 0.380 1.510 sum -5.504 -24.906 -0.781 25.519 Atomic orbital electron populations 1.70180 1.09843 1.29444 1.35170 1.27138 0.95559 1.05395 0.91061 0.84948 0.78074 0.73961 0.80570 1.17282 1.20055 1.17577 1.21396 0.95116 0.89351 1.54152 0.88431 1.18865 0.87221 0.84053 0.76743 1.90628 1.15922 1.87113 1.55649 1.43675 1.10297 1.03738 1.75942 1.17939 0.91882 0.87196 0.93510 1.21198 1.03677 0.93629 1.03451 1.21160 0.92615 0.96854 0.95818 1.21434 0.99594 0.98794 1.05316 1.18899 0.84160 0.94316 0.94031 1.86127 1.30613 1.35706 1.72235 1.22671 0.91397 0.86045 1.03002 1.20291 0.86128 0.82186 0.80529 1.90762 1.75141 1.33593 1.46681 1.48515 1.19754 1.12924 1.53892 1.22572 1.00866 0.81891 0.98694 1.22674 0.92115 0.96638 1.04535 1.22796 0.98028 0.94623 1.00831 1.22470 0.82627 1.00232 0.97568 1.20427 0.98171 0.96728 1.07298 0.91310 0.75277 0.83344 0.80620 0.81465 0.86147 0.85439 0.89414 0.89040 0.89118 0.87479 0.87599 0.90544 0.90879 0.92845 0.89481 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -51.90 11.82 21.85 0.26 -51.65 16 2 C 0.02 1.39 5.50 85.33 0.47 1.86 16 3 Si 1.01 41.56 29.56 68.60 2.03 43.59 16 4 H -0.25 -9.51 7.11 99.48 0.71 -8.81 16 5 H -0.28 -11.09 7.11 99.48 0.71 -10.39 16 6 H -0.25 -9.74 7.11 99.48 0.71 -9.03 16 7 C -0.56 -32.55 9.54 24.79 0.24 -32.31 16 8 H 0.10 4.90 7.85 -2.91 -0.02 4.88 16 9 C 0.52 31.88 7.58 86.30 0.65 32.54 16 10 O -0.61 -42.94 12.44 -4.47 -0.06 -43.00 16 11 N -0.69 -33.43 5.32 -307.59 -1.63 -35.06 16 12 C 0.19 8.64 6.29 38.28 0.24 8.88 16 13 C -0.20 -6.40 9.97 22.44 0.22 -6.18 16 14 C -0.05 -1.15 10.03 22.24 0.22 -0.93 16 15 C -0.23 -6.34 9.04 22.42 0.20 -6.14 16 16 C 0.13 5.27 6.68 22.49 0.15 5.42 16 17 O -0.33 -13.67 9.67 -73.40 -0.71 -14.38 16 18 C 0.05 1.19 4.41 71.23 0.31 1.51 16 19 C 0.52 15.81 7.93 87.65 0.69 16.51 16 20 O -0.58 -25.49 16.75 16.01 0.27 -25.22 16 21 N -0.62 -12.30 3.33 -811.76 -2.70 -15.00 16 22 C 0.08 0.71 6.48 86.73 0.56 1.28 16 23 C -0.12 -0.55 6.95 31.78 0.22 -0.33 16 24 C -0.12 -1.04 7.08 31.99 0.23 -0.81 16 25 C 0.09 1.63 6.91 86.86 0.60 2.23 16 26 C -0.20 -10.30 8.63 22.51 0.19 -10.10 16 27 H 0.28 15.98 8.29 -92.71 -0.77 15.21 16 28 H 0.41 16.31 8.80 -92.71 -0.82 15.49 16 29 H 0.15 3.85 8.06 -2.91 -0.02 3.83 16 30 H 0.18 2.52 8.06 -2.91 -0.02 2.49 16 31 H 0.17 2.80 6.29 -2.91 -0.02 2.78 16 32 H 0.12 2.28 7.65 -2.38 -0.02 2.26 16 33 H 0.13 2.21 7.67 -2.39 -0.02 2.20 16 34 H 0.09 0.55 8.14 -2.38 -0.02 0.53 16 35 H 0.09 0.51 8.14 -2.39 -0.02 0.49 16 36 H 0.09 0.25 8.14 -2.39 -0.02 0.23 16 37 H 0.11 0.09 8.14 -2.38 -0.02 0.07 16 38 H 0.11 0.50 8.14 -2.39 -0.02 0.48 16 39 H 0.08 0.69 8.14 -2.39 -0.02 0.67 16 40 H 0.07 1.21 8.14 -2.38 -0.02 1.19 16 41 H 0.05 1.22 8.03 -2.39 -0.02 1.20 16 42 H 0.09 5.47 6.22 -2.91 -0.02 5.45 16 Total: -1.00 -99.01 357.14 2.91 -96.10 By element: Atomic # 1 Polarization: 30.98 SS G_CDS: 0.24 Total: 31.22 kcal Atomic # 6 Polarization: 8.18 SS G_CDS: 5.21 Total: 13.39 kcal Atomic # 7 Polarization: -97.62 SS G_CDS: -4.08 Total: -101.70 kcal Atomic # 8 Polarization: -82.10 SS G_CDS: -0.50 Total: -82.60 kcal Atomic # 14 Polarization: 41.56 SS G_CDS: 2.03 Total: 43.59 kcal Total: -99.01 2.91 -96.10 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000274253558.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.139 kcal (2) G-P(sol) polarization free energy of solvation -99.006 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.144 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.906 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -96.100 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.239 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds