Wall clock time and date at job start Tue Mar 31 2020 12:02:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30637 * 1 3 3 Si 1.86799 * 120.00025 * 2 1 4 4 H 1.48493 * 109.47404 * 240.00037 * 3 2 1 5 5 H 1.48502 * 109.47318 * 0.02562 * 3 2 1 6 6 H 1.48507 * 109.47177 * 120.00158 * 3 2 1 7 7 C 1.40118 * 119.99986 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99936 * 179.97438 * 7 2 1 9 9 C 1.46174 * 119.99992 * 0.02562 * 7 2 1 10 10 O 1.21742 * 119.99912 * 359.97438 * 9 7 2 11 11 N 1.34776 * 119.99912 * 179.97438 * 9 7 2 12 12 C 1.39572 * 119.99725 * 184.70214 * 11 9 7 13 13 C 1.39133 * 120.01521 * 324.31838 * 12 11 9 14 14 C 1.38166 * 120.21048 * 179.97438 * 13 12 11 15 15 C 1.38064 * 120.23792 * 0.02562 * 14 13 12 16 16 C 1.39614 * 120.02227 * 359.97438 * 15 14 13 17 17 C 1.47863 * 120.10626 * 180.27305 * 16 15 14 18 18 O 1.21555 * 120.00098 * 139.19919 * 17 16 15 19 19 N 1.34778 * 119.99822 * 319.20388 * 17 16 15 20 20 C 1.46923 * 120.63216 * 354.21403 * 19 17 16 21 21 C 1.52764 * 109.00403 * 233.58694 * 20 19 17 22 22 C 1.53032 * 109.38333 * 305.58541 * 21 20 19 23 23 C 1.53034 * 109.54059 * 61.24529 * 22 21 20 24 24 H 1.09006 * 109.52736 * 58.59871 * 23 22 21 25 25 O 1.42894 * 109.50103 * 178.67996 * 23 22 21 26 26 C 1.46926 * 120.62836 * 174.49552 * 19 17 16 27 27 C 1.38757 * 120.01053 * 144.30642 * 12 11 9 28 28 H 0.97000 * 120.00021 * 359.97438 * 1 2 3 29 29 H 0.97000 * 120.00161 * 4.70626 * 11 9 7 30 30 H 1.08003 * 119.89290 * 359.96388 * 13 12 11 31 31 H 1.07997 * 119.87467 * 180.02562 * 14 13 12 32 32 H 1.07998 * 119.99017 * 180.02562 * 15 14 13 33 33 H 1.08998 * 109.58165 * 353.41807 * 20 19 17 34 34 H 1.08997 * 109.58796 * 113.84811 * 20 19 17 35 35 H 1.09001 * 109.55982 * 185.55101 * 21 20 19 36 36 H 1.08998 * 109.38861 * 65.51745 * 21 20 19 37 37 H 1.08995 * 109.46601 * 301.22107 * 22 21 20 38 38 H 1.09002 * 109.44730 * 181.25610 * 22 21 20 39 39 H 0.96708 * 114.00025 * 179.83476 * 25 23 22 40 40 H 1.08998 * 109.58612 * 246.15250 * 26 19 17 41 41 H 1.09005 * 109.58954 * 6.57819 * 26 19 17 42 42 H 1.08005 * 120.11929 * 0.03744 * 27 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3064 0.0000 0.0000 3 14 2.2404 1.6177 0.0000 4 1 3.0941 1.6964 -1.2124 5 1 1.2754 2.7465 0.0006 6 1 3.0942 1.6964 1.2125 7 6 2.0070 -1.2135 0.0005 8 1 3.0870 -1.2134 0.0001 9 6 1.2761 -2.4794 0.0005 10 8 0.0587 -2.4793 0.0005 11 7 1.9500 -3.6465 0.0005 12 6 1.2556 -4.8532 -0.0985 13 6 0.0134 -4.9936 0.5123 14 6 -0.6777 -6.1861 0.4163 15 6 -0.1404 -7.2466 -0.2857 16 6 1.1054 -7.1165 -0.9025 17 6 1.6799 -8.2490 -1.6599 18 8 2.2514 -8.0479 -2.7137 19 7 1.5697 -9.5044 -1.1819 20 6 0.9951 -9.7515 0.1476 21 6 1.9756 -10.5904 0.9652 22 6 2.3295 -11.8598 0.1873 23 6 3.0016 -11.4797 -1.1340 24 1 3.8975 -10.8928 -0.9315 25 8 3.3594 -12.6660 -1.8457 26 6 2.0276 -10.6513 -1.9778 27 6 1.8037 -5.9132 -0.8065 28 1 -0.4850 0.8400 0.0004 29 1 2.9175 -3.6480 0.0695 30 1 -0.4118 -4.1678 1.0633 31 1 -1.6417 -6.2890 0.8922 32 1 -0.6842 -8.1768 -0.3585 33 1 0.8200 -8.8013 0.6522 34 1 0.0540 -10.2917 0.0443 35 1 1.5182 -10.8623 1.9165 36 1 2.8809 -10.0119 1.1490 37 1 1.4207 -12.4257 -0.0172 38 1 3.0117 -12.4699 0.7793 39 1 3.7889 -12.5001 -2.6962 40 1 1.1725 -11.2664 -2.2580 41 1 2.5336 -10.2948 -2.8751 42 1 2.7680 -5.8070 -1.2812 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000274723693.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:02:01 Heat of formation + Delta-G solvation = -92.881513 kcal Electronic energy + Delta-G solvation = -26136.048972 eV Core-core repulsion = 22273.842602 eV Total energy + Delta-G solvation = -3862.206370 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.66118 -39.12663 -38.08008 -36.82290 -36.09202 -33.63020 -32.71135 -32.50347 -31.12462 -30.09034 -28.96425 -26.31212 -26.00477 -23.50783 -23.15414 -22.06471 -21.20978 -20.23107 -19.08806 -17.79859 -17.59953 -17.08071 -16.48861 -16.04575 -15.65279 -15.38123 -15.26630 -14.97066 -14.75757 -14.25611 -13.94543 -13.80245 -13.46895 -13.32500 -13.11842 -12.90907 -12.85169 -12.51474 -12.25328 -12.05264 -11.60465 -11.39313 -11.29175 -11.25338 -11.09603 -10.99530 -10.82158 -10.68315 -10.55068 -10.40727 -9.91493 -9.34759 -8.94112 -8.85341 -8.54354 -7.80802 -7.25805 -6.39681 -4.87379 1.34770 1.78916 2.69605 2.92360 3.06543 3.11826 3.13510 3.81241 3.94745 4.10239 4.29638 4.42619 4.48139 4.54666 4.62607 4.72869 4.76904 4.88294 5.16805 5.24085 5.28271 5.35793 5.42936 5.50457 5.53799 5.56680 5.60854 5.73365 5.78409 5.91784 5.92585 6.08250 6.23639 6.32089 6.58089 6.86852 6.94510 7.15201 7.22958 7.24699 7.27804 7.64964 7.95703 8.09516 8.11299 8.80066 9.13690 10.31535 10.50891 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.029643 B = 0.002561 C = 0.002475 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 944.351713 B =10932.237177 C =11312.107348 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.759 5.759 2 C 0.086 3.914 3 Si 0.914 3.086 4 H -0.266 1.266 5 H -0.279 1.279 6 H -0.266 1.266 7 C -0.537 4.537 8 H 0.072 0.928 9 C 0.544 3.456 10 O -0.561 6.561 11 N -0.700 5.700 12 C 0.187 3.813 13 C -0.104 4.104 14 C -0.108 4.108 15 C -0.136 4.136 16 C -0.118 4.118 17 C 0.570 3.430 18 O -0.537 6.537 19 N -0.608 5.608 20 C 0.094 3.906 21 C -0.134 4.134 22 C -0.113 4.113 23 C 0.092 3.908 24 H 0.060 0.940 25 O -0.565 6.565 26 C 0.081 3.919 27 C -0.119 4.119 28 H 0.273 0.727 29 H 0.395 0.605 30 H 0.147 0.853 31 H 0.123 0.877 32 H 0.120 0.880 33 H 0.108 0.892 34 H 0.070 0.930 35 H 0.085 0.915 36 H 0.071 0.929 37 H 0.072 0.928 38 H 0.072 0.928 39 H 0.381 0.619 40 H 0.074 0.926 41 H 0.094 0.906 42 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.573 -20.413 2.263 20.846 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.387 5.387 2 C -0.135 4.135 3 Si 0.738 3.262 4 H -0.191 1.191 5 H -0.204 1.204 6 H -0.191 1.191 7 C -0.573 4.573 8 H 0.090 0.910 9 C 0.351 3.649 10 O -0.443 6.443 11 N -0.343 5.343 12 C 0.088 3.912 13 C -0.125 4.125 14 C -0.127 4.127 15 C -0.156 4.156 16 C -0.122 4.122 17 C 0.360 3.640 18 O -0.414 6.414 19 N -0.343 5.343 20 C -0.029 4.029 21 C -0.172 4.172 22 C -0.151 4.151 23 C 0.032 3.968 24 H 0.078 0.922 25 O -0.370 6.370 26 C -0.042 4.042 27 C -0.142 4.142 28 H 0.084 0.916 29 H 0.228 0.772 30 H 0.165 0.835 31 H 0.141 0.859 32 H 0.138 0.862 33 H 0.126 0.874 34 H 0.089 0.911 35 H 0.104 0.896 36 H 0.089 0.911 37 H 0.090 0.910 38 H 0.091 0.909 39 H 0.228 0.772 40 H 0.092 0.908 41 H 0.112 0.888 42 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges 2.583 -20.352 2.201 20.633 hybrid contribution 1.137 1.030 -0.581 1.641 sum 3.720 -19.322 1.620 19.743 Atomic orbital electron populations 1.69966 1.07168 1.28003 1.33517 1.25744 0.94729 1.00555 0.92474 0.86322 0.79799 0.80437 0.79648 1.19088 1.20365 1.19089 1.20813 0.93839 0.88916 1.53749 0.90954 1.18389 0.87480 0.82013 0.77053 1.90616 1.13672 1.85900 1.54076 1.44158 1.09797 1.04048 1.76324 1.17869 0.93426 0.86512 0.93385 1.21732 0.94760 0.97551 0.98463 1.20949 0.99590 0.92658 0.99475 1.21048 0.95226 0.99313 1.00019 1.19311 0.96852 0.93810 1.02212 1.18589 0.78249 0.82273 0.84905 1.90756 1.42830 1.84302 1.23527 1.47874 1.62689 1.05520 1.18221 1.22113 0.95977 1.02201 0.82597 1.21859 1.00494 0.96014 0.98851 1.21490 1.01218 0.97931 0.94421 1.22147 0.96543 0.85774 0.92317 0.92182 1.86508 1.81849 1.31503 1.37095 1.22290 0.98863 0.87439 0.95579 1.20882 1.01584 0.92231 0.99485 0.91607 0.77180 0.83496 0.85858 0.86199 0.87438 0.91136 0.89641 0.91065 0.90969 0.90917 0.77156 0.90792 0.88786 0.85726 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.76 -21.63 11.82 55.55 0.66 -20.97 16 2 C 0.09 2.29 5.50 -17.35 -0.10 2.20 16 3 Si 0.91 19.24 29.56 -169.99 -5.02 14.21 16 4 H -0.27 -5.50 7.11 56.52 0.40 -5.10 16 5 H -0.28 -5.74 7.11 56.52 0.40 -5.34 16 6 H -0.27 -5.43 7.11 56.52 0.40 -5.03 16 7 C -0.54 -14.39 9.54 -35.69 -0.34 -14.73 16 8 H 0.07 1.75 7.85 -52.49 -0.41 1.34 16 9 C 0.54 14.68 7.58 -13.08 -0.10 14.58 16 10 O -0.56 -16.91 12.47 5.15 0.06 -16.85 16 11 N -0.70 -15.30 5.31 -11.23 -0.06 -15.36 16 12 C 0.19 3.77 6.28 -83.81 -0.53 3.24 16 13 C -0.10 -2.05 8.68 -39.28 -0.34 -2.39 16 14 C -0.11 -1.68 10.02 -39.67 -0.40 -2.08 16 15 C -0.14 -1.92 7.39 -39.13 -0.29 -2.21 16 16 C -0.12 -1.88 5.10 -104.99 -0.54 -2.42 16 17 C 0.57 8.76 7.32 -12.32 -0.09 8.67 16 18 O -0.54 -10.02 16.35 5.32 0.09 -9.93 16 19 N -0.61 -7.00 2.98 -174.14 -0.52 -7.52 16 20 C 0.09 0.82 4.87 -3.93 -0.02 0.80 16 21 C -0.13 -0.98 6.06 -26.84 -0.16 -1.14 16 22 C -0.11 -0.87 5.54 -26.70 -0.15 -1.02 16 23 C 0.09 0.80 3.62 -26.61 -0.10 0.70 16 24 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 25 O -0.56 -4.77 13.32 -35.23 -0.47 -5.24 16 26 C 0.08 0.81 6.07 -3.71 -0.02 0.79 16 27 C -0.12 -2.14 9.57 -38.94 -0.37 -2.51 16 28 H 0.27 7.07 8.29 -40.82 -0.34 6.73 16 29 H 0.39 7.40 8.80 -40.82 -0.36 7.04 16 30 H 0.15 3.32 6.25 -52.48 -0.33 2.99 16 31 H 0.12 1.59 8.06 -52.49 -0.42 1.16 16 32 H 0.12 1.33 6.62 -52.49 -0.35 0.99 16 33 H 0.11 1.02 4.77 -51.93 -0.25 0.77 16 34 H 0.07 0.51 8.12 -51.93 -0.42 0.09 16 35 H 0.09 0.47 8.14 -51.93 -0.42 0.05 16 36 H 0.07 0.58 8.14 -51.93 -0.42 0.15 16 37 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 38 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 39 H 0.38 1.82 9.08 45.56 0.41 2.23 16 40 H 0.07 0.68 8.14 -51.93 -0.42 0.25 16 41 H 0.09 1.04 7.00 -51.93 -0.36 0.67 16 42 H 0.12 2.16 8.06 -52.48 -0.42 1.74 16 LS Contribution 348.02 15.07 5.24 5.24 Total: -1.00 -34.65 348.02 -8.14 -42.79 By element: Atomic # 1 Polarization: 15.71 SS G_CDS: -4.58 Total: 11.13 kcal Atomic # 6 Polarization: 6.03 SS G_CDS: -3.54 Total: 2.50 kcal Atomic # 7 Polarization: -43.93 SS G_CDS: 0.08 Total: -43.85 kcal Atomic # 8 Polarization: -31.70 SS G_CDS: -0.32 Total: -32.02 kcal Atomic # 14 Polarization: 19.24 SS G_CDS: -5.02 Total: 14.21 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -34.65 -8.14 -42.79 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000274723693.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.093 kcal (2) G-P(sol) polarization free energy of solvation -34.651 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.744 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.137 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.788 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.882 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds