Wall clock time and date at job start Tue Mar 31 2020 12:02:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30637 * 1 3 3 Si 1.86799 * 120.00025 * 2 1 4 4 H 1.48493 * 109.47404 * 240.00037 * 3 2 1 5 5 H 1.48502 * 109.47318 * 0.02562 * 3 2 1 6 6 H 1.48507 * 109.47177 * 120.00158 * 3 2 1 7 7 C 1.40118 * 119.99986 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99936 * 179.97438 * 7 2 1 9 9 C 1.46174 * 119.99992 * 0.02562 * 7 2 1 10 10 O 1.21742 * 119.99912 * 359.97438 * 9 7 2 11 11 N 1.34776 * 119.99912 * 179.97438 * 9 7 2 12 12 C 1.39572 * 119.99725 * 184.70214 * 11 9 7 13 13 C 1.39133 * 120.01521 * 324.31838 * 12 11 9 14 14 C 1.38166 * 120.21048 * 179.97438 * 13 12 11 15 15 C 1.38064 * 120.23792 * 0.02562 * 14 13 12 16 16 C 1.39614 * 120.02227 * 359.97438 * 15 14 13 17 17 C 1.47863 * 120.10626 * 180.27305 * 16 15 14 18 18 O 1.21555 * 120.00098 * 139.19919 * 17 16 15 19 19 N 1.34778 * 119.99822 * 319.20388 * 17 16 15 20 20 C 1.46923 * 120.63216 * 354.21403 * 19 17 16 21 21 C 1.52764 * 109.00403 * 233.58694 * 20 19 17 22 22 C 1.53032 * 109.38333 * 305.58541 * 21 20 19 23 23 C 1.53034 * 109.54059 * 61.24529 * 22 21 20 24 24 H 1.09006 * 109.52736 * 58.59871 * 23 22 21 25 25 O 1.42894 * 109.50103 * 178.67996 * 23 22 21 26 26 C 1.46926 * 120.62836 * 174.49552 * 19 17 16 27 27 C 1.38757 * 120.01053 * 144.30642 * 12 11 9 28 28 H 0.97000 * 120.00021 * 359.97438 * 1 2 3 29 29 H 0.97000 * 120.00161 * 4.70626 * 11 9 7 30 30 H 1.08003 * 119.89290 * 359.96388 * 13 12 11 31 31 H 1.07997 * 119.87467 * 180.02562 * 14 13 12 32 32 H 1.07998 * 119.99017 * 180.02562 * 15 14 13 33 33 H 1.08998 * 109.58165 * 353.41807 * 20 19 17 34 34 H 1.08997 * 109.58796 * 113.84811 * 20 19 17 35 35 H 1.09001 * 109.55982 * 185.55101 * 21 20 19 36 36 H 1.08998 * 109.38861 * 65.51745 * 21 20 19 37 37 H 1.08995 * 109.46601 * 301.22107 * 22 21 20 38 38 H 1.09002 * 109.44730 * 181.25610 * 22 21 20 39 39 H 0.96708 * 114.00025 * 179.83476 * 25 23 22 40 40 H 1.08998 * 109.58612 * 246.15250 * 26 19 17 41 41 H 1.09005 * 109.58954 * 6.57819 * 26 19 17 42 42 H 1.08005 * 120.11929 * 0.03744 * 27 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3064 0.0000 0.0000 3 14 2.2404 1.6177 0.0000 4 1 3.0941 1.6964 -1.2124 5 1 1.2754 2.7465 0.0006 6 1 3.0942 1.6964 1.2125 7 6 2.0070 -1.2135 0.0005 8 1 3.0870 -1.2134 0.0001 9 6 1.2761 -2.4794 0.0005 10 8 0.0587 -2.4793 0.0005 11 7 1.9500 -3.6465 0.0005 12 6 1.2556 -4.8532 -0.0985 13 6 0.0134 -4.9936 0.5123 14 6 -0.6777 -6.1861 0.4163 15 6 -0.1404 -7.2466 -0.2857 16 6 1.1054 -7.1165 -0.9025 17 6 1.6799 -8.2490 -1.6599 18 8 2.2514 -8.0479 -2.7137 19 7 1.5697 -9.5044 -1.1819 20 6 0.9951 -9.7515 0.1476 21 6 1.9756 -10.5904 0.9652 22 6 2.3295 -11.8598 0.1873 23 6 3.0016 -11.4797 -1.1340 24 1 3.8975 -10.8928 -0.9315 25 8 3.3594 -12.6660 -1.8457 26 6 2.0276 -10.6513 -1.9778 27 6 1.8037 -5.9132 -0.8065 28 1 -0.4850 0.8400 0.0004 29 1 2.9175 -3.6480 0.0695 30 1 -0.4118 -4.1678 1.0633 31 1 -1.6417 -6.2890 0.8922 32 1 -0.6842 -8.1768 -0.3585 33 1 0.8200 -8.8013 0.6522 34 1 0.0540 -10.2917 0.0443 35 1 1.5182 -10.8623 1.9165 36 1 2.8809 -10.0119 1.1490 37 1 1.4207 -12.4257 -0.0172 38 1 3.0117 -12.4699 0.7793 39 1 3.7889 -12.5001 -2.6962 40 1 1.1725 -11.2664 -2.2580 41 1 2.5336 -10.2948 -2.8751 42 1 2.7680 -5.8070 -1.2812 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000274723693.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:02:00 Heat of formation + Delta-G solvation = -119.365038 kcal Electronic energy + Delta-G solvation = -26137.197384 eV Core-core repulsion = 22273.842602 eV Total energy + Delta-G solvation = -3863.354782 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.77267 -40.57751 -39.15826 -38.43776 -36.90874 -35.37487 -34.54784 -33.54093 -32.30170 -31.24885 -30.31211 -28.22835 -26.95441 -24.49396 -24.22692 -23.47904 -22.42471 -21.50171 -20.22295 -19.51341 -18.68579 -18.08688 -17.67604 -17.63687 -17.09667 -16.60280 -16.57950 -16.01260 -15.87138 -15.60890 -15.18380 -15.05307 -14.67535 -14.62106 -14.30997 -14.14893 -14.08871 -13.60860 -13.48718 -13.22981 -13.00780 -12.84241 -12.76889 -12.65503 -12.43344 -12.08479 -12.00936 -11.99234 -11.57596 -11.28955 -11.20665 -10.98769 -10.74507 -10.06621 -9.82140 -9.68138 -8.88307 -8.38412 -6.96530 -0.01099 0.40785 1.39210 1.41583 1.53835 1.57960 1.82522 2.20113 2.35337 2.77919 2.91340 3.22174 3.39385 3.54433 3.77706 3.84547 3.96460 3.98592 4.02463 4.17227 4.24991 4.34580 4.46696 4.53695 4.60292 4.66885 4.75240 4.78542 4.87844 4.92684 5.05203 5.13028 5.23787 5.24832 5.33619 5.41631 5.45689 5.49392 5.72669 5.81427 6.12058 6.20212 6.31798 6.74282 6.76255 6.97189 7.28368 8.31593 8.54456 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.029643 B = 0.002561 C = 0.002475 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 944.351713 B =10932.237177 C =11312.107348 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.811 5.811 2 C 0.031 3.969 3 Si 1.000 3.000 4 H -0.257 1.257 5 H -0.272 1.272 6 H -0.252 1.252 7 C -0.567 4.567 8 H 0.091 0.909 9 C 0.531 3.469 10 O -0.604 6.604 11 N -0.696 5.696 12 C 0.155 3.845 13 C -0.127 4.127 14 C -0.097 4.097 15 C -0.107 4.107 16 C -0.119 4.119 17 C 0.567 3.433 18 O -0.579 6.579 19 N -0.596 5.596 20 C 0.085 3.915 21 C -0.128 4.128 22 C -0.111 4.111 23 C 0.097 3.903 24 H 0.049 0.951 25 O -0.573 6.573 26 C 0.081 3.919 27 C -0.121 4.121 28 H 0.278 0.722 29 H 0.406 0.594 30 H 0.110 0.890 31 H 0.157 0.843 32 H 0.164 0.836 33 H 0.102 0.898 34 H 0.100 0.900 35 H 0.111 0.889 36 H 0.059 0.941 37 H 0.080 0.920 38 H 0.076 0.924 39 H 0.395 0.605 40 H 0.090 0.910 41 H 0.078 0.922 42 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.683 -22.561 2.776 23.027 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.440 5.440 2 C -0.186 4.186 3 Si 0.819 3.181 4 H -0.181 1.181 5 H -0.197 1.197 6 H -0.176 1.176 7 C -0.602 4.602 8 H 0.109 0.891 9 C 0.338 3.662 10 O -0.489 6.489 11 N -0.340 5.340 12 C 0.058 3.942 13 C -0.148 4.148 14 C -0.116 4.116 15 C -0.127 4.127 16 C -0.122 4.122 17 C 0.357 3.643 18 O -0.460 6.460 19 N -0.329 5.329 20 C -0.036 4.036 21 C -0.166 4.166 22 C -0.149 4.149 23 C 0.037 3.963 24 H 0.067 0.933 25 O -0.380 6.380 26 C -0.041 4.041 27 C -0.143 4.143 28 H 0.089 0.911 29 H 0.241 0.759 30 H 0.128 0.872 31 H 0.174 0.826 32 H 0.181 0.819 33 H 0.120 0.880 34 H 0.118 0.882 35 H 0.129 0.871 36 H 0.078 0.922 37 H 0.099 0.901 38 H 0.095 0.905 39 H 0.245 0.755 40 H 0.108 0.892 41 H 0.097 0.903 42 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges 2.721 -22.596 2.738 22.924 hybrid contribution 1.081 1.430 -0.741 1.940 sum 3.802 -21.166 1.997 21.598 Atomic orbital electron populations 1.70122 1.09457 1.29486 1.34904 1.26974 0.95593 1.04903 0.91106 0.85029 0.78232 0.74526 0.80325 1.18069 1.19709 1.17606 1.21366 0.94996 0.89623 1.54234 0.89076 1.18694 0.87228 0.83606 0.76653 1.90573 1.15377 1.87035 1.55935 1.43708 1.10263 1.03799 1.76231 1.18031 0.94198 0.86450 0.95506 1.21591 0.95316 0.98411 0.99524 1.21239 1.00270 0.91117 0.98924 1.21441 0.93973 1.00151 0.97110 1.19523 0.97411 0.93403 1.01882 1.18476 0.78179 0.83280 0.84350 1.90742 1.44820 1.85059 1.25345 1.47940 1.61297 1.04547 1.19138 1.22404 0.97557 1.02605 0.81043 1.21839 0.99824 0.95360 0.99597 1.21509 1.01548 0.98153 0.93681 1.22070 0.95852 0.85606 0.92729 0.93267 1.86485 1.82016 1.31356 1.38175 1.22411 0.99679 0.86916 0.95139 1.20857 1.01761 0.92478 0.99219 0.91148 0.75855 0.87201 0.82564 0.81881 0.88025 0.88224 0.87104 0.92203 0.90108 0.90531 0.75502 0.89201 0.90325 0.85909 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -48.01 11.82 21.85 0.26 -47.75 16 2 C 0.03 1.67 5.50 85.33 0.47 2.14 16 3 Si 1.00 39.72 29.56 68.60 2.03 41.75 16 4 H -0.26 -9.72 7.11 99.48 0.71 -9.01 16 5 H -0.27 -10.42 7.11 99.48 0.71 -9.72 16 6 H -0.25 -9.37 7.11 99.48 0.71 -8.67 16 7 C -0.57 -31.27 9.54 24.79 0.24 -31.04 16 8 H 0.09 4.48 7.85 -2.91 -0.02 4.46 16 9 C 0.53 30.19 7.58 86.30 0.65 30.84 16 10 O -0.60 -38.63 12.47 -4.48 -0.06 -38.69 16 11 N -0.70 -32.01 5.31 -307.63 -1.63 -33.65 16 12 C 0.16 6.51 6.28 38.25 0.24 6.75 16 13 C -0.13 -5.18 8.68 22.47 0.20 -4.99 16 14 C -0.10 -2.87 10.02 22.21 0.22 -2.65 16 15 C -0.11 -2.71 7.39 22.56 0.17 -2.55 16 16 C -0.12 -3.63 5.10 -20.10 -0.10 -3.73 16 17 C 0.57 16.72 7.32 86.79 0.63 17.36 16 18 O -0.58 -21.58 16.35 -3.89 -0.06 -21.65 16 19 N -0.60 -12.23 2.98 -823.12 -2.45 -14.68 16 20 C 0.08 1.16 4.87 86.22 0.42 1.58 16 21 C -0.13 -1.42 6.06 30.53 0.19 -1.24 16 22 C -0.11 -1.35 5.54 30.62 0.17 -1.18 16 23 C 0.10 1.48 3.62 30.67 0.11 1.60 16 24 H 0.05 0.86 8.14 -2.38 -0.02 0.84 16 25 O -0.57 -8.44 13.32 -148.98 -1.98 -10.43 16 26 C 0.08 1.44 6.07 86.36 0.52 1.96 16 27 C -0.12 -4.41 9.57 22.69 0.22 -4.19 16 28 H 0.28 14.92 8.29 -92.71 -0.77 14.15 16 29 H 0.41 16.01 8.80 -92.71 -0.82 15.20 16 30 H 0.11 5.33 6.25 -2.91 -0.02 5.31 16 31 H 0.16 3.56 8.06 -2.91 -0.02 3.54 16 32 H 0.16 2.77 6.62 -2.91 -0.02 2.75 16 33 H 0.10 1.54 4.77 -2.39 -0.01 1.52 16 34 H 0.10 0.88 8.12 -2.39 -0.02 0.86 16 35 H 0.11 0.74 8.14 -2.39 -0.02 0.72 16 36 H 0.06 0.82 8.14 -2.39 -0.02 0.81 16 37 H 0.08 0.88 8.14 -2.39 -0.02 0.86 16 38 H 0.08 0.91 8.14 -2.39 -0.02 0.89 16 39 H 0.40 3.11 9.08 -74.05 -0.67 2.44 16 40 H 0.09 1.35 8.14 -2.39 -0.02 1.33 16 41 H 0.08 1.67 7.00 -2.38 -0.02 1.65 16 42 H 0.12 4.42 8.06 -2.91 -0.02 4.40 16 Total: -1.00 -80.14 348.02 0.03 -80.11 By element: Atomic # 1 Polarization: 34.72 SS G_CDS: -0.41 Total: 34.32 kcal Atomic # 6 Polarization: 6.32 SS G_CDS: 4.34 Total: 10.67 kcal Atomic # 7 Polarization: -92.25 SS G_CDS: -3.83 Total: -96.08 kcal Atomic # 8 Polarization: -68.66 SS G_CDS: -2.10 Total: -70.76 kcal Atomic # 14 Polarization: 39.72 SS G_CDS: 2.03 Total: 41.75 kcal Total: -80.14 0.03 -80.11 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000274723693.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.257 kcal (2) G-P(sol) polarization free energy of solvation -80.140 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.397 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.032 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.108 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.365 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds