Wall clock time and date at job start Tue Mar 31 2020 13:55:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52994 * 109.46993 * 2 1 4 4 C 1.50704 * 109.47186 * 119.99468 * 2 1 3 5 5 C 1.38402 * 119.84795 * 319.24452 * 4 2 1 6 6 C 1.37902 * 120.15507 * 179.69507 * 5 4 2 7 7 C 1.39692 * 119.84528 * 0.55328 * 6 5 4 8 8 C 1.47689 * 120.15693 * 179.72112 * 7 6 5 9 9 O 1.21474 * 120.00183 * 152.65056 * 8 7 6 10 10 N 1.34777 * 119.99983 * 332.65084 * 8 7 6 11 11 C 1.33331 * 120.00132 * 177.62909 * 10 8 7 12 12 H 1.08006 * 119.99838 * 224.45737 * 11 10 8 13 13 C 1.46779 * 120.00210 * 44.46008 * 11 10 8 14 14 N 1.29319 * 120.00289 * 191.61329 * 13 11 10 15 15 Si 1.86801 * 119.99752 * 11.60852 * 13 11 10 16 16 H 1.48502 * 109.47491 * 265.97608 * 15 13 11 17 17 H 1.48500 * 109.47460 * 25.97978 * 15 13 11 18 18 H 1.48504 * 109.47134 * 145.97735 * 15 13 11 19 19 C 1.46504 * 119.99955 * 357.63091 * 10 8 7 20 20 C 1.52996 * 117.49845 * 186.83753 * 19 10 8 21 21 C 1.53001 * 117.49937 * 118.21235 * 19 10 8 22 22 C 1.39646 * 119.69059 * 359.44419 * 7 6 5 23 23 C 1.37952 * 119.84743 * 0.28138 * 22 7 6 24 24 N 1.48011 * 119.92540 * 179.97438 * 23 22 7 25 25 O 1.31697 * 120.00345 * 39.85015 * 24 23 22 26 26 O 1.31703 * 119.99847 * 219.85279 * 24 23 22 27 27 H 1.09003 * 109.47178 * 299.99992 * 1 2 3 28 28 H 1.08990 * 109.47112 * 59.99937 * 1 2 3 29 29 H 1.08998 * 109.46694 * 180.02562 * 1 2 3 30 30 H 1.08998 * 109.47172 * 239.99534 * 2 1 3 31 31 H 1.08998 * 109.47375 * 299.99739 * 3 2 1 32 32 H 1.08998 * 109.47542 * 59.99761 * 3 2 1 33 33 H 1.09006 * 109.47178 * 180.02562 * 3 2 1 34 34 H 1.08000 * 119.92312 * 359.95059 * 5 4 2 35 35 H 1.08004 * 120.08334 * 180.29649 * 6 5 4 36 36 H 0.97000 * 120.00062 * 179.97438 * 14 13 11 37 37 H 1.08996 * 115.54944 * 332.54191 * 19 10 8 38 38 H 1.09000 * 117.49957 * 0.02562 * 20 19 10 39 39 H 1.09001 * 117.49682 * 145.02209 * 20 19 10 40 40 H 1.08996 * 117.50159 * 214.98077 * 21 19 10 41 41 H 1.08997 * 117.49588 * 359.97438 * 21 19 10 42 42 H 1.08008 * 120.07927 * 180.29505 * 22 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0324 -0.7103 1.2306 5 6 1.4047 -0.5078 2.4473 6 6 1.8552 -1.1593 3.5761 7 6 2.9550 -2.0165 3.4918 8 6 3.4470 -2.7130 4.6975 9 8 4.0233 -3.7771 4.5917 10 7 3.2566 -2.1681 5.9154 11 6 3.6586 -2.8191 7.0074 12 1 3.0120 -2.8765 7.8706 13 6 4.9798 -3.4577 7.0364 14 7 5.2835 -4.2723 7.9937 15 14 6.2228 -3.0938 5.6902 16 1 6.1172 -4.1251 4.6269 17 1 5.9468 -1.7549 5.1103 18 1 7.5927 -3.1122 6.2632 19 6 2.6078 -0.8604 6.0395 20 6 2.5637 -0.2227 7.4295 21 6 1.2877 -0.7970 6.8105 22 6 3.5834 -2.2162 2.2608 23 6 3.1186 -1.5623 1.1385 24 7 3.7838 -1.7723 -0.1669 25 8 4.1968 -2.9750 -0.5097 26 8 3.9627 -0.7564 -0.9858 27 1 -0.3634 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8899 29 1 -0.3632 -1.0277 0.0005 30 1 1.8934 -0.5139 -0.8899 31 1 1.6767 1.9563 -0.8900 32 1 1.6766 1.9563 0.8899 33 1 3.1300 1.4425 -0.0005 34 1 0.5575 0.1589 2.5121 35 1 1.3615 -1.0041 4.5241 36 1 6.1565 -4.6946 8.0127 37 1 2.7232 -0.1953 5.1837 38 1 3.0178 -0.7759 8.2517 39 1 2.6502 0.8622 7.4884 40 1 0.5349 -0.0899 6.4622 41 1 0.9019 -1.7283 7.2250 42 1 4.4313 -2.8813 2.1875 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000275870177.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:55:16 Heat of formation + Delta-G solvation = 72.236141 kcal Electronic energy + Delta-G solvation = -27440.873537 eV Core-core repulsion = 23585.827206 eV Total energy + Delta-G solvation = -3855.046331 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 2.64 seconds Orbital eigenvalues (eV) -40.85656 -39.44654 -38.04962 -36.81004 -35.68667 -34.24370 -33.23212 -32.25696 -31.76110 -30.37242 -27.42113 -26.79497 -25.65491 -23.69884 -22.80774 -22.14189 -21.58315 -20.44462 -20.12459 -18.77372 -18.08253 -17.08392 -16.74867 -16.27300 -16.00548 -15.37796 -14.92074 -14.79961 -14.53769 -14.26587 -14.08156 -13.89091 -13.67612 -13.30288 -13.05366 -12.73432 -12.62074 -12.31002 -12.09958 -11.67953 -11.52362 -11.44591 -11.39065 -11.25625 -11.22408 -11.15710 -10.91077 -10.53425 -10.44450 -10.33169 -10.16961 -10.00513 -9.47742 -9.15433 -8.89335 -8.62534 -7.86753 -6.56573 -4.13420 -0.50755 0.68839 0.98924 1.14860 2.84565 3.27808 3.30876 3.50466 3.78789 3.95873 4.12301 4.21841 4.27037 4.39742 4.66122 4.74001 4.83161 4.84832 4.91408 4.93304 5.04387 5.15852 5.16863 5.31983 5.36805 5.39041 5.51154 5.55691 5.62967 5.68341 5.74556 5.77354 5.86887 5.91660 6.05257 6.06017 6.06631 6.14096 6.36902 6.42971 6.65450 6.76507 7.28105 7.73580 8.36384 8.67552 8.97249 9.60887 10.39599 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.015132 B = 0.005033 C = 0.004064 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1849.882352 B = 5561.690711 C = 6888.544501 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.071 4.071 3 C -0.136 4.136 4 C -0.019 4.019 5 C -0.120 4.120 6 C -0.065 4.065 7 C -0.092 4.092 8 C 0.452 3.548 9 O -0.542 6.542 10 N -0.381 5.381 11 C -0.377 4.377 12 H 0.101 0.899 13 C 0.097 3.903 14 N -0.818 5.818 15 Si 0.933 3.067 16 H -0.250 1.250 17 H -0.283 1.283 18 H -0.310 1.310 19 C 0.036 3.964 20 C -0.167 4.167 21 C -0.199 4.199 22 C -0.020 4.020 23 C -0.004 4.004 24 N -0.021 5.021 25 O -0.164 6.164 26 O -0.160 6.160 27 H 0.063 0.937 28 H 0.065 0.935 29 H 0.057 0.943 30 H 0.089 0.911 31 H 0.064 0.936 32 H 0.057 0.943 33 H 0.065 0.935 34 H 0.149 0.851 35 H 0.165 0.835 36 H 0.285 0.715 37 H 0.118 0.882 38 H 0.115 0.885 39 H 0.091 0.909 40 H 0.092 0.908 41 H 0.100 0.900 42 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.774 12.540 -9.099 18.319 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.090 4.090 3 C -0.194 4.194 4 C -0.021 4.021 5 C -0.138 4.138 6 C -0.083 4.083 7 C -0.097 4.097 8 C 0.246 3.754 9 O -0.429 6.429 10 N -0.095 5.095 11 C -0.504 4.504 12 H 0.118 0.882 13 C -0.122 4.122 14 N -0.447 5.447 15 Si 0.765 3.235 16 H -0.176 1.176 17 H -0.208 1.208 18 H -0.241 1.241 19 C -0.068 4.068 20 C -0.204 4.204 21 C -0.238 4.238 22 C -0.040 4.040 23 C -0.089 4.089 24 N 0.463 4.537 25 O -0.361 6.361 26 O -0.357 6.357 27 H 0.081 0.919 28 H 0.084 0.916 29 H 0.076 0.924 30 H 0.107 0.893 31 H 0.083 0.917 32 H 0.076 0.924 33 H 0.084 0.916 34 H 0.167 0.833 35 H 0.182 0.818 36 H 0.096 0.904 37 H 0.135 0.865 38 H 0.133 0.867 39 H 0.109 0.891 40 H 0.111 0.889 41 H 0.118 0.882 42 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges -9.671 11.950 -8.378 17.508 hybrid contribution 0.885 -0.013 -0.885 1.252 sum -8.786 11.937 -9.263 17.478 Atomic orbital electron populations 1.21931 0.93580 1.02358 1.02561 1.20420 0.96598 0.97415 0.94554 1.21765 1.02278 0.93291 1.02020 1.19807 0.92215 0.92811 0.97310 1.21019 1.01004 1.01620 0.90161 1.22558 0.93860 0.91772 1.00155 1.20354 0.96815 0.98015 0.94473 1.17866 0.88156 0.86491 0.82883 1.90520 1.44843 1.22994 1.84497 1.41806 1.49608 1.12814 1.05279 1.19580 1.00316 1.35673 0.94865 0.88159 1.27064 0.97378 0.92270 0.95525 1.68676 1.22446 1.21605 1.31937 0.85896 0.76163 0.79637 0.81800 1.17598 1.20840 1.24057 1.22465 0.98583 0.89348 0.96422 1.23237 1.00161 0.99500 0.97512 1.23400 0.91289 1.03466 1.05623 1.21049 0.99161 0.94493 0.89343 1.19986 1.00004 1.07484 0.81405 1.50463 0.97875 1.02208 1.03145 1.96309 1.53581 1.04471 1.81705 1.96206 1.60416 1.30143 1.48959 0.91850 0.91647 0.92389 0.89308 0.91705 0.92431 0.91561 0.83342 0.81781 0.90371 0.86484 0.86657 0.89078 0.88946 0.88154 0.82921 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 43. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.19 8.74 37.16 0.32 -0.87 16 2 C -0.07 -0.76 2.34 -91.77 -0.21 -0.97 16 3 C -0.14 -1.26 8.98 37.15 0.33 -0.93 16 4 C -0.02 -0.25 4.83 -104.51 -0.51 -0.75 16 5 C -0.12 -1.34 9.13 -39.64 -0.36 -1.70 16 6 C -0.06 -0.89 7.53 -39.16 -0.30 -1.19 16 7 C -0.09 -1.68 5.55 -104.97 -0.58 -2.26 16 8 C 0.45 10.43 5.69 -12.40 -0.07 10.36 16 9 O -0.54 -14.63 11.57 5.39 0.06 -14.57 16 10 N -0.38 -8.49 2.51 -107.31 -0.27 -8.76 16 11 C -0.38 -9.74 8.52 -13.45 -0.11 -9.85 16 12 H 0.10 2.67 7.54 -52.48 -0.40 2.28 16 13 C 0.10 2.67 5.20 -15.16 -0.08 2.59 16 14 N -0.82 -22.93 13.88 56.00 0.78 -22.16 16 15 Si 0.93 23.90 24.50 -169.99 -4.17 19.73 16 16 H -0.25 -6.76 6.35 56.52 0.36 -6.40 16 17 H -0.28 -7.07 7.02 56.52 0.40 -6.68 16 18 H -0.31 -7.70 7.11 56.52 0.40 -7.30 16 19 C 0.04 0.61 4.26 -67.93 -0.29 0.32 16 20 C -0.17 -2.51 9.79 -26.73 -0.26 -2.77 16 21 C -0.20 -2.72 9.23 -26.73 -0.25 -2.97 16 22 C -0.02 -0.36 9.26 -39.16 -0.36 -0.73 16 23 C 0.00 -0.07 6.50 -80.01 -0.52 -0.59 16 24 N -0.02 -0.36 4.52 33.93 0.15 -0.20 16 25 O -0.16 -3.07 19.75 -31.57 -0.62 -3.69 16 26 O -0.16 -2.60 16.52 -31.57 -0.52 -3.12 16 27 H 0.06 0.42 6.59 -51.93 -0.34 0.08 16 28 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 29 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 30 H 0.09 1.10 5.83 -51.93 -0.30 0.80 16 31 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 32 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 33 H 0.07 0.71 7.53 -51.93 -0.39 0.32 16 34 H 0.15 1.12 6.53 -52.49 -0.34 0.78 16 35 H 0.17 2.04 4.23 -52.48 -0.22 1.82 16 36 H 0.28 7.44 8.26 -40.82 -0.34 7.10 16 37 H 0.12 1.69 5.63 -51.93 -0.29 1.40 16 38 H 0.12 2.04 6.84 -51.93 -0.36 1.68 16 39 H 0.09 1.10 8.14 -51.93 -0.42 0.68 16 40 H 0.09 0.93 8.14 -51.93 -0.42 0.51 16 41 H 0.10 1.54 8.14 -51.93 -0.42 1.12 16 42 H 0.15 2.99 7.88 -52.48 -0.41 2.58 16 LS Contribution 343.14 15.07 5.17 5.17 Total: -1.00 -31.09 343.14 -7.86 -38.94 By element: Atomic # 1 Polarization: 6.17 SS G_CDS: -5.20 Total: 0.97 kcal Atomic # 6 Polarization: -9.07 SS G_CDS: -3.24 Total: -12.31 kcal Atomic # 7 Polarization: -31.78 SS G_CDS: 0.66 Total: -31.12 kcal Atomic # 8 Polarization: -20.31 SS G_CDS: -1.08 Total: -21.39 kcal Atomic # 14 Polarization: 23.90 SS G_CDS: -4.17 Total: 19.73 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -31.09 -7.86 -38.94 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000275870177.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.179 kcal (2) G-P(sol) polarization free energy of solvation -31.085 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 80.094 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.857 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.943 kcal (6) G-S(sol) free energy of system = (1) + (5) 72.236 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.64 seconds