Wall clock time and date at job start Tue Mar 31 2020 13:55:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52994 * 109.46993 * 2 1 4 4 C 1.50704 * 109.47186 * 119.99468 * 2 1 3 5 5 C 1.38402 * 119.84795 * 319.24452 * 4 2 1 6 6 C 1.37902 * 120.15507 * 179.69507 * 5 4 2 7 7 C 1.39692 * 119.84528 * 0.55328 * 6 5 4 8 8 C 1.47689 * 120.15693 * 179.72112 * 7 6 5 9 9 O 1.21474 * 120.00183 * 152.65056 * 8 7 6 10 10 N 1.34777 * 119.99983 * 332.65084 * 8 7 6 11 11 C 1.33331 * 120.00132 * 177.62909 * 10 8 7 12 12 H 1.08006 * 119.99838 * 224.45737 * 11 10 8 13 13 C 1.46779 * 120.00210 * 44.46008 * 11 10 8 14 14 N 1.29319 * 120.00289 * 191.61329 * 13 11 10 15 15 Si 1.86801 * 119.99752 * 11.60852 * 13 11 10 16 16 H 1.48502 * 109.47491 * 265.97608 * 15 13 11 17 17 H 1.48500 * 109.47460 * 25.97978 * 15 13 11 18 18 H 1.48504 * 109.47134 * 145.97735 * 15 13 11 19 19 C 1.46504 * 119.99955 * 357.63091 * 10 8 7 20 20 C 1.52996 * 117.49845 * 186.83753 * 19 10 8 21 21 C 1.53001 * 117.49937 * 118.21235 * 19 10 8 22 22 C 1.39646 * 119.69059 * 359.44419 * 7 6 5 23 23 C 1.37952 * 119.84743 * 0.28138 * 22 7 6 24 24 N 1.48011 * 119.92540 * 179.97438 * 23 22 7 25 25 O 1.31697 * 120.00345 * 39.85015 * 24 23 22 26 26 O 1.31703 * 119.99847 * 219.85279 * 24 23 22 27 27 H 1.09003 * 109.47178 * 299.99992 * 1 2 3 28 28 H 1.08990 * 109.47112 * 59.99937 * 1 2 3 29 29 H 1.08998 * 109.46694 * 180.02562 * 1 2 3 30 30 H 1.08998 * 109.47172 * 239.99534 * 2 1 3 31 31 H 1.08998 * 109.47375 * 299.99739 * 3 2 1 32 32 H 1.08998 * 109.47542 * 59.99761 * 3 2 1 33 33 H 1.09006 * 109.47178 * 180.02562 * 3 2 1 34 34 H 1.08000 * 119.92312 * 359.95059 * 5 4 2 35 35 H 1.08004 * 120.08334 * 180.29649 * 6 5 4 36 36 H 0.97000 * 120.00062 * 179.97438 * 14 13 11 37 37 H 1.08996 * 115.54944 * 332.54191 * 19 10 8 38 38 H 1.09000 * 117.49957 * 0.02562 * 20 19 10 39 39 H 1.09001 * 117.49682 * 145.02209 * 20 19 10 40 40 H 1.08996 * 117.50159 * 214.98077 * 21 19 10 41 41 H 1.08997 * 117.49588 * 359.97438 * 21 19 10 42 42 H 1.08008 * 120.07927 * 180.29505 * 22 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0324 -0.7103 1.2306 5 6 1.4047 -0.5078 2.4473 6 6 1.8552 -1.1593 3.5761 7 6 2.9550 -2.0165 3.4918 8 6 3.4470 -2.7130 4.6975 9 8 4.0233 -3.7771 4.5917 10 7 3.2566 -2.1681 5.9154 11 6 3.6586 -2.8191 7.0074 12 1 3.0120 -2.8765 7.8706 13 6 4.9798 -3.4577 7.0364 14 7 5.2835 -4.2723 7.9937 15 14 6.2228 -3.0938 5.6902 16 1 6.1172 -4.1251 4.6269 17 1 5.9468 -1.7549 5.1103 18 1 7.5927 -3.1122 6.2632 19 6 2.6078 -0.8604 6.0395 20 6 2.5637 -0.2227 7.4295 21 6 1.2877 -0.7970 6.8105 22 6 3.5834 -2.2162 2.2608 23 6 3.1186 -1.5623 1.1385 24 7 3.7838 -1.7723 -0.1669 25 8 4.1968 -2.9750 -0.5097 26 8 3.9627 -0.7564 -0.9858 27 1 -0.3634 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8899 29 1 -0.3632 -1.0277 0.0005 30 1 1.8934 -0.5139 -0.8899 31 1 1.6767 1.9563 -0.8900 32 1 1.6766 1.9563 0.8899 33 1 3.1300 1.4425 -0.0005 34 1 0.5575 0.1589 2.5121 35 1 1.3615 -1.0041 4.5241 36 1 6.1565 -4.6946 8.0127 37 1 2.7232 -0.1953 5.1837 38 1 3.0178 -0.7759 8.2517 39 1 2.6502 0.8622 7.4884 40 1 0.5349 -0.0899 6.4622 41 1 0.9019 -1.7283 7.2250 42 1 4.4313 -2.8813 2.1875 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000275870177.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:55:15 Heat of formation + Delta-G solvation = 53.200394 kcal Electronic energy + Delta-G solvation = -27441.698989 eV Core-core repulsion = 23585.827206 eV Total energy + Delta-G solvation = -3855.871783 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -42.19791 -40.95052 -39.37047 -38.33199 -36.74666 -35.59011 -35.06418 -33.89386 -33.15733 -31.56050 -28.23963 -28.01679 -27.14039 -25.14535 -24.05390 -23.33693 -22.84714 -21.81358 -21.43313 -20.29849 -19.43286 -18.74950 -17.97613 -17.84372 -17.21702 -17.02478 -16.39810 -16.22321 -15.63757 -15.61746 -15.45595 -15.00424 -14.99026 -14.68073 -14.65376 -14.15738 -13.68188 -13.45802 -13.25311 -13.05414 -12.90362 -12.72860 -12.56419 -12.47729 -12.32738 -12.23280 -12.18856 -12.08421 -12.07774 -11.69601 -11.48159 -11.40916 -11.01159 -10.76020 -10.53251 -10.19184 -9.59013 -8.62213 -6.17003 -1.85183 -0.58022 -0.24081 -0.15251 1.08703 1.18153 1.38133 1.63916 2.14367 2.36955 2.44224 2.77033 2.99609 3.08683 3.21181 3.49229 3.61132 3.66469 3.75851 3.95705 3.97453 4.07784 4.16138 4.19400 4.29167 4.41644 4.50262 4.57643 4.75064 4.84782 4.87612 4.89352 4.93244 4.97245 5.00500 5.17952 5.22822 5.28737 5.32992 5.35345 5.38508 5.46888 5.47891 5.81355 6.44825 6.80089 7.10604 7.77424 8.37980 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.015132 B = 0.005033 C = 0.004064 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1849.882352 B = 5561.690711 C = 6888.544501 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.074 4.074 3 C -0.136 4.136 4 C 0.003 3.997 5 C -0.092 4.092 6 C -0.039 4.039 7 C -0.117 4.117 8 C 0.451 3.549 9 O -0.595 6.595 10 N -0.396 5.396 11 C -0.378 4.378 12 H 0.082 0.918 13 C 0.059 3.941 14 N -0.860 5.860 15 Si 0.970 3.030 16 H -0.286 1.286 17 H -0.276 1.276 18 H -0.302 1.302 19 C 0.008 3.992 20 C -0.169 4.169 21 C -0.168 4.168 22 C -0.038 4.038 23 C -0.019 4.019 24 N -0.020 5.020 25 O -0.244 6.244 26 O -0.105 6.105 27 H 0.092 0.908 28 H 0.080 0.920 29 H 0.049 0.951 30 H 0.067 0.933 31 H 0.082 0.918 32 H 0.082 0.918 33 H 0.045 0.955 34 H 0.211 0.789 35 H 0.189 0.811 36 H 0.285 0.715 37 H 0.150 0.850 38 H 0.077 0.923 39 H 0.131 0.869 40 H 0.150 0.850 41 H 0.076 0.924 42 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.007 17.969 -10.625 25.139 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.093 4.093 3 C -0.193 4.193 4 C 0.001 3.999 5 C -0.110 4.110 6 C -0.057 4.057 7 C -0.122 4.122 8 C 0.245 3.755 9 O -0.485 6.485 10 N -0.110 5.110 11 C -0.506 4.506 12 H 0.100 0.900 13 C -0.156 4.156 14 N -0.491 5.491 15 Si 0.803 3.197 16 H -0.214 1.214 17 H -0.201 1.201 18 H -0.232 1.232 19 C -0.095 4.095 20 C -0.206 4.206 21 C -0.206 4.206 22 C -0.058 4.058 23 C -0.104 4.104 24 N 0.462 4.538 25 O -0.420 6.420 26 O -0.321 6.321 27 H 0.111 0.889 28 H 0.099 0.901 29 H 0.068 0.932 30 H 0.085 0.915 31 H 0.101 0.899 32 H 0.101 0.899 33 H 0.065 0.935 34 H 0.228 0.772 35 H 0.206 0.794 36 H 0.096 0.904 37 H 0.167 0.833 38 H 0.096 0.904 39 H 0.149 0.851 40 H 0.168 0.832 41 H 0.095 0.905 42 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -13.884 17.211 -9.860 24.212 hybrid contribution 1.969 -1.417 -0.666 2.516 sum -11.915 15.794 -10.526 22.410 Atomic orbital electron populations 1.21970 0.90750 1.02615 1.04889 1.20577 0.98841 0.97794 0.92042 1.21809 1.01091 0.92113 1.04290 1.20441 0.89779 0.90235 0.99436 1.21637 1.01134 1.00508 0.87676 1.22810 0.91298 0.89336 1.02268 1.19957 0.99410 1.00791 0.92002 1.18704 0.86223 0.85963 0.84646 1.90475 1.46702 1.25540 1.85756 1.41929 1.50163 1.15034 1.03904 1.19355 0.99362 1.36797 0.95114 0.89997 1.27523 0.98899 0.92942 0.96214 1.68730 1.23078 1.23864 1.33453 0.85307 0.75921 0.78611 0.79855 1.21397 1.20146 1.23249 1.22797 1.00892 0.87079 0.98704 1.23294 1.00992 1.01279 0.95028 1.23517 0.90942 1.03403 1.02696 1.20777 0.99203 0.95162 0.90700 1.20139 1.01390 1.08754 0.80067 1.50624 0.97685 1.01925 1.03564 1.96341 1.57688 1.05033 1.82919 1.96155 1.57223 1.29836 1.48917 0.88946 0.90069 0.93190 0.91518 0.89866 0.89907 0.93539 0.77224 0.79400 0.90355 0.83280 0.90409 0.85087 0.83180 0.90485 0.86469 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.37 8.74 71.98 0.63 -0.74 16 2 C -0.07 -1.18 2.34 -11.54 -0.03 -1.20 16 3 C -0.14 -1.68 8.98 71.98 0.65 -1.03 16 4 C 0.00 0.07 4.83 -19.79 -0.10 -0.03 16 5 C -0.09 -1.40 9.13 22.23 0.20 -1.20 16 6 C -0.04 -0.88 7.53 22.54 0.17 -0.71 16 7 C -0.12 -4.19 5.55 -20.09 -0.11 -4.30 16 8 C 0.45 21.33 5.69 86.74 0.49 21.82 16 9 O -0.60 -34.34 11.57 -3.63 -0.04 -34.38 16 10 N -0.40 -17.77 2.51 -611.72 -1.53 -19.30 16 11 C -0.38 -20.37 8.52 86.70 0.74 -19.63 16 12 H 0.08 4.61 7.54 -2.91 -0.02 4.59 16 13 C 0.06 3.41 5.20 87.30 0.45 3.87 16 14 N -0.86 -51.31 13.88 23.25 0.32 -50.98 16 15 Si 0.97 52.38 24.50 68.60 1.68 54.06 16 16 H -0.29 -16.87 6.35 99.48 0.63 -16.24 16 17 H -0.28 -14.22 7.02 99.48 0.70 -13.53 16 18 H -0.30 -15.54 7.11 99.48 0.71 -14.83 16 19 C 0.01 0.25 4.26 44.99 0.19 0.44 16 20 C -0.17 -4.56 9.79 30.59 0.30 -4.26 16 21 C -0.17 -3.79 9.23 30.60 0.28 -3.51 16 22 C -0.04 -1.40 9.26 22.54 0.21 -1.20 16 23 C -0.02 -0.58 6.50 36.34 0.24 -0.35 16 24 N -0.02 -0.70 4.52 -46.56 -0.21 -0.91 16 25 O -0.24 -9.84 19.75 3.52 0.07 -9.77 16 26 O -0.11 -3.25 16.52 3.51 0.06 -3.19 16 27 H 0.09 0.36 6.59 -2.39 -0.02 0.35 16 28 H 0.08 0.59 8.14 -2.39 -0.02 0.57 16 29 H 0.05 0.58 8.14 -2.39 -0.02 0.56 16 30 H 0.07 1.40 5.83 -2.39 -0.01 1.39 16 31 H 0.08 0.78 8.14 -2.39 -0.02 0.76 16 32 H 0.08 0.64 8.14 -2.39 -0.02 0.62 16 33 H 0.05 0.78 7.53 -2.38 -0.02 0.76 16 34 H 0.21 0.86 6.53 -2.91 -0.02 0.84 16 35 H 0.19 3.42 4.23 -2.91 -0.01 3.41 16 36 H 0.29 15.96 8.26 -92.71 -0.77 15.20 16 37 H 0.15 3.49 5.63 -2.39 -0.01 3.48 16 38 H 0.08 2.74 6.84 -2.39 -0.02 2.72 16 39 H 0.13 2.49 8.14 -2.39 -0.02 2.47 16 40 H 0.15 1.75 8.14 -2.39 -0.02 1.73 16 41 H 0.08 2.16 8.14 -2.39 -0.02 2.14 16 42 H 0.12 5.13 7.88 -2.91 -0.02 5.11 16 Total: -1.00 -80.05 343.14 5.65 -74.41 By element: Atomic # 1 Polarization: 1.11 SS G_CDS: 0.98 Total: 2.09 kcal Atomic # 6 Polarization: -16.33 SS G_CDS: 4.32 Total: -12.01 kcal Atomic # 7 Polarization: -69.78 SS G_CDS: -1.42 Total: -71.20 kcal Atomic # 8 Polarization: -47.43 SS G_CDS: 0.09 Total: -47.35 kcal Atomic # 14 Polarization: 52.38 SS G_CDS: 1.68 Total: 54.06 kcal Total: -80.05 5.65 -74.41 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000275870177.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 127.607 kcal (2) G-P(sol) polarization free energy of solvation -80.052 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.555 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.645 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.407 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.200 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds