Wall clock time and date at job start Tue Mar 31 2020 12:44:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46496 * 112.84582 * 2 1 4 4 C 1.34775 * 120.00038 * 50.33239 * 3 2 1 5 5 O 1.21352 * 120.00254 * 359.97438 * 4 3 2 6 6 C 1.49358 * 120.00094 * 179.97438 * 4 3 2 7 7 O 1.21384 * 119.99723 * 359.97438 * 6 4 3 8 8 N 1.34774 * 120.00512 * 180.02562 * 6 4 3 9 9 C 1.39719 * 120.00440 * 175.49651 * 8 6 4 10 10 C 1.39015 * 120.04208 * 214.86118 * 9 8 6 11 11 C 1.38143 * 120.06367 * 179.78675 * 10 9 8 12 12 C 1.38179 * 120.14397 * 0.46522 * 11 10 9 13 13 C 1.38922 * 120.08084 * 359.78498 * 12 11 10 14 14 O 1.35748 * 120.03119 * 179.97438 * 13 12 11 15 15 C 1.34834 * 117.00253 * 5.36940 * 14 13 12 16 16 H 1.08004 * 119.99708 * 354.96774 * 15 14 13 17 17 C 1.38654 * 120.00086 * 174.95995 * 15 14 13 18 18 N 1.31550 * 120.00084 * 0.02562 * 17 15 14 19 19 Si 1.86800 * 119.99635 * 180.02562 * 17 15 14 20 20 H 1.48505 * 109.46937 * 90.00671 * 19 17 15 21 21 H 1.48506 * 109.46914 * 210.00296 * 19 17 15 22 22 H 1.48497 * 109.47531 * 330.00455 * 19 17 15 23 23 C 1.38757 * 119.93759 * 359.97438 * 13 12 11 24 24 C 1.53779 * 113.61114 * 131.19400 * 2 1 3 25 25 C 1.53951 * 87.01831 * 89.23452 * 24 2 1 26 26 C 1.53776 * 87.11496 * 25.35963 * 25 24 2 27 27 H 1.09004 * 109.47326 * 69.67214 * 1 2 3 28 28 H 1.09004 * 109.47060 * 189.66582 * 1 2 3 29 29 H 1.08997 * 109.47558 * 309.66645 * 1 2 3 30 30 H 0.97001 * 120.00158 * 230.32862 * 3 2 1 31 31 H 0.97005 * 119.99486 * 355.21555 * 8 6 4 32 32 H 1.08002 * 119.96926 * 359.97438 * 10 9 8 33 33 H 1.08001 * 119.93196 * 180.23031 * 11 10 9 34 34 H 1.08000 * 119.96320 * 179.77116 * 12 11 10 35 35 H 0.97003 * 120.00280 * 179.97438 * 18 17 15 36 36 H 1.08000 * 120.07231 * 180.02562 * 23 13 12 37 37 H 1.09009 * 113.61038 * 203.75217 * 24 2 1 38 38 H 1.08998 * 113.61719 * 334.65256 * 24 2 1 39 39 H 1.09004 * 113.53464 * 270.80311 * 25 24 2 40 40 H 1.08996 * 113.74282 * 139.94588 * 25 24 2 41 41 H 1.08996 * 113.61640 * 220.09543 * 26 25 24 42 42 H 1.08996 * 113.61375 * 89.18953 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0988 1.3500 0.0000 4 6 1.6738 2.2603 0.8985 5 8 0.8197 1.9618 1.7071 6 6 2.2541 3.6366 0.8988 7 8 3.1088 3.9350 0.0902 8 7 1.8296 4.5468 1.7976 9 6 2.4375 5.8032 1.8600 10 6 2.5854 6.4448 3.0843 11 6 3.1903 7.6851 3.1471 12 6 3.6415 8.2963 1.9929 13 6 3.4921 7.6629 0.7655 14 8 3.9353 8.2645 -0.3678 15 6 4.6097 9.4230 -0.2225 16 1 4.7054 9.8731 0.7546 17 6 5.1804 10.0363 -1.3273 18 7 5.0635 9.4881 -2.5174 19 14 6.1153 11.6408 -1.1256 20 1 7.5468 11.3495 -0.8586 21 1 5.9971 12.4424 -2.3702 22 1 5.5454 12.4063 0.0121 23 6 2.8895 6.4148 0.6992 24 6 2.1460 -0.9280 1.0603 25 6 2.0951 -2.0419 -0.0012 26 6 2.1461 -0.9281 -1.0602 27 1 -0.3634 0.3570 -0.9637 28 1 -0.3633 -1.0131 0.1726 29 1 -0.3634 0.6559 0.7910 30 1 2.7813 1.5888 -0.6466 31 1 1.0992 4.3309 2.3984 32 1 2.2298 5.9717 3.9878 33 1 3.3075 8.1799 4.0999 34 1 4.1107 9.2677 2.0449 35 1 5.4625 9.9174 -3.2905 36 1 2.7726 5.9203 -0.2538 37 1 3.1585 -0.6476 1.3507 38 1 1.4939 -1.1079 1.9150 39 1 1.1595 -2.6014 -0.0006 40 1 2.9738 -2.6868 -0.0031 41 1 1.4940 -1.1079 -1.9149 42 1 3.1585 -0.6477 -1.3506 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000278074081.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:44:57 Heat of formation + Delta-G solvation = -39.196161 kcal Electronic energy + Delta-G solvation = -25786.917739 eV Core-core repulsion = 21927.039340 eV Total energy + Delta-G solvation = -3859.878399 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.14103 -39.98846 -38.79498 -37.99297 -36.61769 -34.43893 -33.41306 -32.26494 -29.74294 -29.32182 -28.60759 -26.15404 -25.68232 -25.16867 -23.48871 -22.03819 -21.28861 -20.14620 -19.33491 -18.66117 -18.07071 -17.12493 -16.81368 -16.28768 -15.88236 -15.41537 -15.38242 -15.09703 -14.46811 -14.43466 -14.19237 -13.87820 -13.64039 -13.53949 -13.11110 -12.84867 -12.67169 -12.57979 -12.49243 -11.99062 -11.78584 -11.60665 -11.56624 -11.44683 -11.06748 -11.05484 -11.03689 -10.80617 -10.62687 -10.46376 -9.84391 -9.56695 -9.37731 -9.16934 -8.83362 -7.79282 -7.23022 -6.43855 -4.03077 1.27326 2.09385 2.30572 2.37860 3.13248 3.14253 3.19202 3.24243 3.58137 3.97261 4.04553 4.19747 4.38752 4.41447 4.45665 4.56838 5.07748 5.10246 5.22647 5.28880 5.32130 5.40972 5.49316 5.53139 5.59379 5.67656 5.71134 5.79608 5.82736 6.03855 6.07511 6.14033 6.23368 6.31522 6.56316 6.70202 6.96774 7.01654 7.07504 7.31630 7.42409 7.48349 7.67739 7.78635 8.00492 8.08514 9.01025 9.71220 10.73940 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.020864 B = 0.002617 C = 0.002394 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1341.697950 B =10696.323882 C =11692.850529 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.147 3.853 3 N -0.689 5.689 4 C 0.516 3.484 5 O -0.518 6.518 6 C 0.496 3.504 7 O -0.490 6.490 8 N -0.637 5.637 9 C 0.167 3.833 10 C -0.229 4.229 11 C -0.058 4.058 12 C -0.241 4.241 13 C 0.166 3.834 14 O -0.173 6.173 15 C -0.392 4.392 16 H 0.093 0.907 17 C 0.039 3.961 18 N -0.860 5.860 19 Si 0.942 3.058 20 H -0.273 1.273 21 H -0.278 1.278 22 H -0.267 1.267 23 C -0.185 4.185 24 C -0.144 4.144 25 C -0.138 4.138 26 C -0.140 4.140 27 H 0.059 0.941 28 H 0.068 0.932 29 H 0.091 0.909 30 H 0.415 0.585 31 H 0.417 0.583 32 H 0.111 0.889 33 H 0.114 0.886 34 H 0.129 0.871 35 H 0.270 0.730 36 H 0.134 0.866 37 H 0.085 0.915 38 H 0.076 0.924 39 H 0.085 0.915 40 H 0.074 0.926 41 H 0.078 0.922 42 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.932 -18.613 6.423 20.874 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.062 3.938 3 N -0.343 5.343 4 C 0.297 3.703 5 O -0.394 6.394 6 C 0.277 3.723 7 O -0.363 6.363 8 N -0.283 5.283 9 C 0.075 3.925 10 C -0.250 4.250 11 C -0.077 4.077 12 C -0.261 4.261 13 C 0.111 3.889 14 O -0.075 6.075 15 C -0.468 4.468 16 H 0.111 0.889 17 C -0.165 4.165 18 N -0.495 5.495 19 Si 0.766 3.234 20 H -0.199 1.199 21 H -0.203 1.203 22 H -0.192 1.192 23 C -0.206 4.206 24 C -0.182 4.182 25 C -0.175 4.175 26 C -0.177 4.177 27 H 0.078 0.922 28 H 0.087 0.913 29 H 0.110 0.890 30 H 0.252 0.748 31 H 0.254 0.746 32 H 0.129 0.871 33 H 0.132 0.868 34 H 0.147 0.853 35 H 0.080 0.920 36 H 0.152 0.848 37 H 0.104 0.896 38 H 0.094 0.906 39 H 0.103 0.897 40 H 0.093 0.907 41 H 0.097 0.903 42 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -6.872 -18.666 5.903 20.748 hybrid contribution 0.518 0.861 0.128 1.012 sum -6.355 -17.806 6.031 19.844 Atomic orbital electron populations 1.22004 0.91841 1.03485 1.03839 1.21982 0.94711 0.79326 0.97783 1.45845 1.41977 1.11569 1.34862 1.20092 0.82594 0.85829 0.81783 1.90675 1.30826 1.79899 1.37969 1.20215 0.83531 0.85990 0.82549 1.90863 1.30095 1.79294 1.36091 1.42999 1.36243 1.12240 1.36845 1.17179 0.97956 0.83670 0.93734 1.20305 1.11215 0.98664 0.94833 1.20520 0.95925 0.93920 0.97318 1.21220 1.09707 1.02883 0.92306 1.19104 0.92005 0.90852 0.86948 1.83988 1.62066 1.35530 1.25955 1.21355 1.32035 0.97294 0.96156 0.88937 1.25306 0.97222 0.99647 0.94349 1.70048 1.41862 1.38811 0.98733 0.85702 0.79484 0.79920 0.78250 1.19859 1.20266 1.19165 1.20153 1.07854 0.94547 0.98046 1.23428 1.01799 0.95470 0.97521 1.22748 1.02706 0.96075 0.96020 1.23332 1.01850 0.95449 0.97111 0.92154 0.91286 0.89013 0.74834 0.74551 0.87080 0.86820 0.85308 0.91988 0.84815 0.89631 0.90550 0.89692 0.90684 0.90293 0.89138 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.37 8.95 37.16 0.33 -1.04 16 2 C 0.15 1.32 1.25 -131.01 -0.16 1.15 16 3 N -0.69 -7.52 5.32 -47.31 -0.25 -7.77 16 4 C 0.52 6.86 7.64 -11.63 -0.09 6.78 16 5 O -0.52 -7.24 14.09 5.50 0.08 -7.16 16 6 C 0.50 7.90 7.73 -11.63 -0.09 7.81 16 7 O -0.49 -9.36 13.91 5.47 0.08 -9.28 16 8 N -0.64 -9.91 5.32 -10.31 -0.05 -9.96 16 9 C 0.17 3.15 6.29 -83.78 -0.53 2.62 16 10 C -0.23 -3.94 9.97 -39.33 -0.39 -4.33 16 11 C -0.06 -1.05 10.03 -39.64 -0.40 -1.44 16 12 C -0.24 -5.25 9.17 -39.35 -0.36 -5.61 16 13 C 0.17 4.12 6.64 -39.14 -0.26 3.86 16 14 O -0.17 -5.03 9.76 0.04 0.00 -5.03 16 15 C -0.39 -11.05 9.49 30.89 0.29 -10.75 16 16 H 0.09 2.39 5.20 -52.48 -0.27 2.11 16 17 C 0.04 1.09 5.49 -17.52 -0.10 0.99 16 18 N -0.86 -25.51 13.67 55.48 0.76 -24.75 16 19 Si 0.94 20.58 29.55 -169.99 -5.02 15.56 16 20 H -0.27 -5.83 7.11 56.52 0.40 -5.43 16 21 H -0.28 -5.93 7.11 56.52 0.40 -5.53 16 22 H -0.27 -5.58 7.11 56.52 0.40 -5.18 16 23 C -0.18 -4.20 8.64 -39.19 -0.34 -4.53 16 24 C -0.14 -1.18 7.45 -25.83 -0.19 -1.37 16 25 C -0.14 -0.84 7.74 -25.83 -0.20 -1.04 16 26 C -0.14 -0.94 7.37 -25.92 -0.19 -1.13 16 27 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 28 H 0.07 0.49 7.34 -51.93 -0.38 0.11 16 29 H 0.09 1.02 5.57 -51.93 -0.29 0.73 16 30 H 0.41 4.29 8.11 -40.82 -0.33 3.96 16 31 H 0.42 5.32 8.30 -40.82 -0.34 4.99 16 32 H 0.11 1.56 8.06 -52.49 -0.42 1.14 16 33 H 0.11 1.67 8.06 -52.49 -0.42 1.25 16 34 H 0.13 2.77 5.63 -52.49 -0.30 2.47 16 35 H 0.27 7.33 8.31 -40.82 -0.34 6.99 16 36 H 0.13 3.20 6.23 -52.49 -0.33 2.88 16 37 H 0.09 0.74 8.14 -51.92 -0.42 0.32 16 38 H 0.08 0.65 8.10 -51.93 -0.42 0.23 16 39 H 0.08 0.45 7.64 -51.93 -0.40 0.05 16 40 H 0.07 0.41 8.14 -51.93 -0.42 -0.02 16 41 H 0.08 0.48 8.10 -51.93 -0.42 0.06 16 42 H 0.09 0.58 8.13 -51.93 -0.42 0.16 16 LS Contribution 353.97 15.07 5.33 5.33 Total: -1.00 -32.84 353.97 -6.90 -39.73 By element: Atomic # 1 Polarization: 16.52 SS G_CDS: -5.14 Total: 11.38 kcal Atomic # 6 Polarization: -5.37 SS G_CDS: -2.67 Total: -8.04 kcal Atomic # 7 Polarization: -42.94 SS G_CDS: 0.45 Total: -42.49 kcal Atomic # 8 Polarization: -21.63 SS G_CDS: 0.15 Total: -21.48 kcal Atomic # 14 Polarization: 20.58 SS G_CDS: -5.02 Total: 15.56 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -32.84 -6.90 -39.73 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000278074081.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.538 kcal (2) G-P(sol) polarization free energy of solvation -32.836 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.298 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.898 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.734 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.196 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds