Wall clock time and date at job start Tue Mar 31 2020 12:44:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46496 * 112.84582 * 2 1 4 4 C 1.34775 * 120.00038 * 50.33239 * 3 2 1 5 5 O 1.21352 * 120.00254 * 359.97438 * 4 3 2 6 6 C 1.49358 * 120.00094 * 179.97438 * 4 3 2 7 7 O 1.21384 * 119.99723 * 359.97438 * 6 4 3 8 8 N 1.34774 * 120.00512 * 180.02562 * 6 4 3 9 9 C 1.39719 * 120.00440 * 175.49651 * 8 6 4 10 10 C 1.39015 * 120.04208 * 214.86118 * 9 8 6 11 11 C 1.38143 * 120.06367 * 179.78675 * 10 9 8 12 12 C 1.38179 * 120.14397 * 0.46522 * 11 10 9 13 13 C 1.38922 * 120.08084 * 359.78498 * 12 11 10 14 14 O 1.35748 * 120.03119 * 179.97438 * 13 12 11 15 15 C 1.34834 * 117.00253 * 5.36940 * 14 13 12 16 16 H 1.08004 * 119.99708 * 354.96774 * 15 14 13 17 17 C 1.38654 * 120.00086 * 174.95995 * 15 14 13 18 18 N 1.31550 * 120.00084 * 0.02562 * 17 15 14 19 19 Si 1.86800 * 119.99635 * 180.02562 * 17 15 14 20 20 H 1.48505 * 109.46937 * 90.00671 * 19 17 15 21 21 H 1.48506 * 109.46914 * 210.00296 * 19 17 15 22 22 H 1.48497 * 109.47531 * 330.00455 * 19 17 15 23 23 C 1.38757 * 119.93759 * 359.97438 * 13 12 11 24 24 C 1.53779 * 113.61114 * 131.19400 * 2 1 3 25 25 C 1.53951 * 87.01831 * 89.23452 * 24 2 1 26 26 C 1.53776 * 87.11496 * 25.35963 * 25 24 2 27 27 H 1.09004 * 109.47326 * 69.67214 * 1 2 3 28 28 H 1.09004 * 109.47060 * 189.66582 * 1 2 3 29 29 H 1.08997 * 109.47558 * 309.66645 * 1 2 3 30 30 H 0.97001 * 120.00158 * 230.32862 * 3 2 1 31 31 H 0.97005 * 119.99486 * 355.21555 * 8 6 4 32 32 H 1.08002 * 119.96926 * 359.97438 * 10 9 8 33 33 H 1.08001 * 119.93196 * 180.23031 * 11 10 9 34 34 H 1.08000 * 119.96320 * 179.77116 * 12 11 10 35 35 H 0.97003 * 120.00280 * 179.97438 * 18 17 15 36 36 H 1.08000 * 120.07231 * 180.02562 * 23 13 12 37 37 H 1.09009 * 113.61038 * 203.75217 * 24 2 1 38 38 H 1.08998 * 113.61719 * 334.65256 * 24 2 1 39 39 H 1.09004 * 113.53464 * 270.80311 * 25 24 2 40 40 H 1.08996 * 113.74282 * 139.94588 * 25 24 2 41 41 H 1.08996 * 113.61640 * 220.09543 * 26 25 24 42 42 H 1.08996 * 113.61375 * 89.18953 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0988 1.3500 0.0000 4 6 1.6738 2.2603 0.8985 5 8 0.8197 1.9618 1.7071 6 6 2.2541 3.6366 0.8988 7 8 3.1088 3.9350 0.0902 8 7 1.8296 4.5468 1.7976 9 6 2.4375 5.8032 1.8600 10 6 2.5854 6.4448 3.0843 11 6 3.1903 7.6851 3.1471 12 6 3.6415 8.2963 1.9929 13 6 3.4921 7.6629 0.7655 14 8 3.9353 8.2645 -0.3678 15 6 4.6097 9.4230 -0.2225 16 1 4.7054 9.8731 0.7546 17 6 5.1804 10.0363 -1.3273 18 7 5.0635 9.4881 -2.5174 19 14 6.1153 11.6408 -1.1256 20 1 7.5468 11.3495 -0.8586 21 1 5.9971 12.4424 -2.3702 22 1 5.5454 12.4063 0.0121 23 6 2.8895 6.4148 0.6992 24 6 2.1460 -0.9280 1.0603 25 6 2.0951 -2.0419 -0.0012 26 6 2.1461 -0.9281 -1.0602 27 1 -0.3634 0.3570 -0.9637 28 1 -0.3633 -1.0131 0.1726 29 1 -0.3634 0.6559 0.7910 30 1 2.7813 1.5888 -0.6466 31 1 1.0992 4.3309 2.3984 32 1 2.2298 5.9717 3.9878 33 1 3.3075 8.1799 4.0999 34 1 4.1107 9.2677 2.0449 35 1 5.4625 9.9174 -3.2905 36 1 2.7726 5.9203 -0.2538 37 1 3.1585 -0.6476 1.3507 38 1 1.4939 -1.1079 1.9150 39 1 1.1595 -2.6014 -0.0006 40 1 2.9738 -2.6868 -0.0031 41 1 1.4940 -1.1079 -1.9149 42 1 3.1585 -0.6477 -1.3506 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000278074081.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:44:56 Heat of formation + Delta-G solvation = -62.873678 kcal Electronic energy + Delta-G solvation = -25787.944473 eV Core-core repulsion = 21927.039340 eV Total energy + Delta-G solvation = -3860.905133 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -42.28012 -41.16904 -40.32423 -39.10437 -38.28143 -35.85249 -34.45287 -34.24660 -31.33984 -30.38395 -29.94485 -27.42241 -26.78001 -26.54983 -24.48385 -23.49212 -22.84093 -21.37626 -20.25434 -20.09535 -19.48591 -18.82946 -17.90456 -17.31519 -17.11962 -16.94030 -16.77508 -16.14666 -15.97110 -15.92623 -15.64472 -15.40648 -15.05922 -14.63654 -14.41160 -14.29869 -13.75992 -13.61441 -13.33603 -13.27502 -13.24784 -13.08469 -12.73980 -12.69882 -12.42222 -12.25267 -12.15360 -12.11529 -11.64059 -11.43475 -11.40811 -11.20188 -10.78069 -10.52878 -10.24445 -9.43484 -8.95007 -8.46650 -6.16114 -0.03099 0.59852 0.68533 1.18190 1.35799 1.45810 1.54023 2.00743 2.17570 2.48492 2.80497 3.14759 3.19723 3.43880 3.55218 3.58289 3.80402 3.86789 4.10701 4.33427 4.36651 4.42140 4.59025 4.62719 4.68668 4.70682 4.82276 4.85723 4.94798 5.01596 5.03480 5.07703 5.10290 5.16359 5.26794 5.35149 5.39114 5.48338 5.60117 5.70233 5.88964 6.02485 6.12199 6.26459 6.65906 6.83621 6.97146 7.78087 8.76912 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.020864 B = 0.002617 C = 0.002394 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1341.697950 B =10696.323882 C =11692.850529 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.132 3.868 3 N -0.679 5.679 4 C 0.523 3.477 5 O -0.523 6.523 6 C 0.494 3.506 7 O -0.527 6.527 8 N -0.627 5.627 9 C 0.173 3.827 10 C -0.199 4.199 11 C -0.047 4.047 12 C -0.249 4.249 13 C 0.127 3.873 14 O -0.232 6.232 15 C -0.414 4.414 16 H 0.108 0.892 17 C -0.026 4.026 18 N -0.923 5.923 19 Si 1.022 2.978 20 H -0.264 1.264 21 H -0.272 1.272 22 H -0.248 1.248 23 C -0.208 4.208 24 C -0.147 4.147 25 C -0.125 4.125 26 C -0.134 4.134 27 H 0.060 0.940 28 H 0.090 0.910 29 H 0.069 0.931 30 H 0.416 0.584 31 H 0.434 0.566 32 H 0.162 0.838 33 H 0.163 0.837 34 H 0.127 0.873 35 H 0.272 0.728 36 H 0.107 0.893 37 H 0.078 0.922 38 H 0.072 0.928 39 H 0.098 0.902 40 H 0.085 0.915 41 H 0.089 0.911 42 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.494 -19.822 9.455 23.205 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.047 3.953 3 N -0.332 5.332 4 C 0.303 3.697 5 O -0.400 6.400 6 C 0.277 3.723 7 O -0.402 6.402 8 N -0.275 5.275 9 C 0.080 3.920 10 C -0.220 4.220 11 C -0.065 4.065 12 C -0.268 4.268 13 C 0.076 3.924 14 O -0.138 6.138 15 C -0.490 4.490 16 H 0.125 0.875 17 C -0.223 4.223 18 N -0.561 5.561 19 Si 0.841 3.159 20 H -0.189 1.189 21 H -0.197 1.197 22 H -0.172 1.172 23 C -0.229 4.229 24 C -0.185 4.185 25 C -0.163 4.163 26 C -0.172 4.172 27 H 0.079 0.921 28 H 0.108 0.892 29 H 0.087 0.913 30 H 0.254 0.746 31 H 0.275 0.725 32 H 0.180 0.820 33 H 0.180 0.820 34 H 0.145 0.855 35 H 0.081 0.919 36 H 0.125 0.875 37 H 0.097 0.903 38 H 0.090 0.910 39 H 0.117 0.883 40 H 0.104 0.896 41 H 0.108 0.892 42 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -7.485 -19.942 8.997 23.122 hybrid contribution 0.523 0.960 -0.589 1.242 sum -6.961 -18.982 8.408 21.897 Atomic orbital electron populations 1.21973 0.91676 1.04245 1.03002 1.22386 0.95013 0.78201 0.99662 1.45974 1.41396 1.12009 1.33788 1.19572 0.82701 0.84873 0.82537 1.90684 1.31139 1.79671 1.38501 1.20831 0.82827 0.87120 0.81562 1.90864 1.31798 1.80136 1.37414 1.42940 1.36428 1.10981 1.37108 1.17312 0.96926 0.84605 0.93199 1.20911 1.07812 0.97713 0.95519 1.21045 0.93821 0.93899 0.97762 1.21390 1.10001 1.03006 0.92435 1.19622 0.93293 0.91964 0.87499 1.83956 1.64612 1.36817 1.28439 1.21918 1.32340 0.97574 0.97165 0.87510 1.26685 0.98084 1.03858 0.93662 1.70212 1.44501 1.41446 0.99936 0.84539 0.77907 0.74594 0.78845 1.18866 1.19718 1.17176 1.20163 1.09536 0.94519 0.98704 1.23442 1.01165 0.96226 0.97708 1.22743 1.03946 0.95495 0.94128 1.23351 1.02016 0.94670 0.97145 0.92078 0.89175 0.91252 0.74643 0.72543 0.82048 0.81985 0.85539 0.91861 0.87516 0.90322 0.90966 0.88345 0.89595 0.89201 0.88867 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.47 8.95 71.98 0.64 -1.82 16 2 C 0.13 2.17 1.25 4.13 0.01 2.17 16 3 N -0.68 -14.51 5.32 -421.96 -2.24 -16.75 16 4 C 0.52 13.64 7.64 87.24 0.67 14.31 16 5 O -0.52 -14.01 14.09 -3.25 -0.05 -14.06 16 6 C 0.49 15.79 7.73 87.24 0.67 16.46 16 7 O -0.53 -20.99 13.91 -3.35 -0.05 -21.04 16 8 N -0.63 -18.67 5.32 -304.88 -1.62 -20.29 16 9 C 0.17 6.32 6.29 38.20 0.24 6.56 16 10 C -0.20 -6.01 9.97 22.43 0.22 -5.79 16 11 C -0.05 -1.52 10.03 22.23 0.22 -1.29 16 12 C -0.25 -10.72 9.17 22.42 0.21 -10.51 16 13 C 0.13 6.64 6.64 22.56 0.15 6.79 16 14 O -0.23 -14.54 9.76 -22.76 -0.22 -14.76 16 15 C -0.41 -24.54 9.49 67.92 0.64 -23.89 16 16 H 0.11 5.69 5.20 -2.91 -0.02 5.68 16 17 C -0.03 -1.49 5.49 84.83 0.47 -1.02 16 18 N -0.92 -58.21 13.67 21.61 0.30 -57.92 16 19 Si 1.02 43.29 29.55 68.60 2.03 45.32 16 20 H -0.26 -10.63 7.11 99.48 0.71 -9.92 16 21 H -0.27 -11.13 7.11 99.48 0.71 -10.42 16 22 H -0.25 -9.60 7.11 99.48 0.71 -8.89 16 23 C -0.21 -9.84 8.64 22.52 0.19 -9.65 16 24 C -0.15 -2.16 7.45 31.18 0.23 -1.93 16 25 C -0.13 -1.21 7.74 31.18 0.24 -0.97 16 26 C -0.13 -1.53 7.37 31.12 0.23 -1.30 16 27 H 0.06 0.97 8.14 -2.39 -0.02 0.95 16 28 H 0.09 1.06 7.34 -2.39 -0.02 1.05 16 29 H 0.07 1.47 5.57 -2.39 -0.01 1.46 16 30 H 0.42 8.65 8.11 -92.71 -0.75 7.90 16 31 H 0.43 9.96 8.30 -92.70 -0.77 9.19 16 32 H 0.16 3.40 8.06 -2.91 -0.02 3.38 16 33 H 0.16 3.76 8.06 -2.91 -0.02 3.74 16 34 H 0.13 5.43 5.63 -2.91 -0.02 5.41 16 35 H 0.27 15.70 8.31 -92.71 -0.77 14.92 16 36 H 0.11 5.56 6.23 -2.91 -0.02 5.54 16 37 H 0.08 1.27 8.14 -2.38 -0.02 1.25 16 38 H 0.07 1.12 8.10 -2.39 -0.02 1.10 16 39 H 0.10 0.71 7.64 -2.39 -0.02 0.70 16 40 H 0.09 0.69 8.14 -2.39 -0.02 0.67 16 41 H 0.09 0.86 8.10 -2.39 -0.02 0.84 16 42 H 0.09 1.04 8.13 -2.39 -0.02 1.02 16 Total: -1.00 -78.60 353.97 2.75 -75.85 By element: Atomic # 1 Polarization: 35.98 SS G_CDS: -0.43 Total: 35.55 kcal Atomic # 6 Polarization: -16.93 SS G_CDS: 5.04 Total: -11.89 kcal Atomic # 7 Polarization: -91.39 SS G_CDS: -3.57 Total: -94.96 kcal Atomic # 8 Polarization: -49.54 SS G_CDS: -0.31 Total: -49.86 kcal Atomic # 14 Polarization: 43.29 SS G_CDS: 2.03 Total: 45.32 kcal Total: -78.60 2.75 -75.85 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000278074081.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.975 kcal (2) G-P(sol) polarization free energy of solvation -78.600 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.625 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.751 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.849 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.874 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds