Wall clock time and date at job start Tue Mar 31 2020 13:55:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52998 * 109.47077 * 2 1 4 4 C 1.53004 * 109.47010 * 180.02562 * 3 2 1 5 5 C 1.53002 * 110.53736 * 66.37543 * 4 3 2 6 6 N 1.47317 * 110.59639 * 303.54849 * 4 3 2 7 7 C 1.34527 * 106.61770 * 241.47385 * 6 4 3 8 8 O 1.21536 * 123.77117 * 180.02562 * 7 6 4 9 9 N 1.33795 * 112.46183 * 359.97438 * 7 6 4 10 10 C 1.40197 * 124.18323 * 179.97438 * 9 7 6 11 11 C 1.38918 * 120.02700 * 6.12554 * 10 9 7 12 12 C 1.38171 * 120.06871 * 179.70590 * 11 10 9 13 13 C 1.38156 * 120.13713 * 0.27710 * 12 11 10 14 14 C 1.38909 * 120.06223 * 0.02562 * 13 12 11 15 15 O 1.35750 * 120.03904 * 179.97438 * 14 13 12 16 16 C 1.34828 * 116.99672 * 354.56091 * 15 14 13 17 17 H 1.07996 * 120.00559 * 5.04870 * 16 15 14 18 18 C 1.38661 * 119.99752 * 185.04595 * 16 15 14 19 19 N 1.31554 * 119.99985 * 179.97438 * 18 16 15 20 20 Si 1.86804 * 119.99761 * 0.02562 * 18 16 15 21 21 H 1.48502 * 109.47030 * 90.00331 * 20 18 16 22 22 H 1.48495 * 109.46916 * 209.99877 * 20 18 16 23 23 H 1.48496 * 109.47362 * 329.99888 * 20 18 16 24 24 C 1.38668 * 120.03319 * 186.40865 * 10 9 7 25 25 C 1.34773 * 111.64072 * 0.23653 * 9 7 6 26 26 O 1.21238 * 127.15765 * 179.73747 * 25 9 7 27 27 H 1.09000 * 109.46939 * 299.99779 * 1 2 3 28 28 H 1.09005 * 109.47029 * 59.99529 * 1 2 3 29 29 H 1.09002 * 109.47356 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.46939 * 240.00221 * 2 1 3 31 31 H 1.08996 * 109.46873 * 120.00671 * 2 1 3 32 32 H 1.09000 * 109.47055 * 60.00292 * 3 2 1 33 33 H 1.08991 * 109.47352 * 300.00033 * 3 2 1 34 34 H 1.08995 * 109.47136 * 297.87581 * 5 4 3 35 35 H 1.08999 * 109.46796 * 57.87221 * 5 4 3 36 36 H 1.09001 * 109.47181 * 177.86868 * 5 4 3 37 37 H 0.96993 * 126.69106 * 61.44344 * 6 4 3 38 38 H 1.08000 * 119.96582 * 359.97438 * 11 10 9 39 39 H 1.07999 * 119.93015 * 180.29906 * 12 11 10 40 40 H 1.07999 * 119.97048 * 180.02562 * 13 12 11 41 41 H 0.97002 * 119.99991 * 179.97438 * 19 18 16 42 42 H 1.07997 * 120.06889 * 359.97438 * 24 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5700 1.4425 -0.0006 5 6 4.1062 0.8685 -1.3137 6 7 4.0887 0.6802 1.1483 7 6 4.8006 1.5446 1.8937 8 8 5.3702 1.2394 2.9230 9 7 4.8125 2.7778 1.3748 10 6 5.4790 3.8684 1.9509 11 6 6.2883 3.6795 3.0641 12 6 6.9503 4.7527 3.6289 13 6 6.8054 6.0175 3.0923 14 6 5.9926 6.2138 1.9831 15 8 5.8501 7.4569 1.4566 16 6 6.4326 8.4742 2.1227 17 1 7.0495 8.2717 2.9856 18 6 6.2395 9.7805 1.6996 19 7 6.8075 10.7732 2.3498 20 14 5.1719 10.1309 0.2074 21 1 3.7648 10.3259 0.6402 22 1 5.6562 11.3604 -0.4701 23 1 5.2459 8.9851 -0.7343 24 6 5.3264 5.1376 1.4136 25 6 4.1000 2.8434 0.2327 26 8 3.9211 3.8194 -0.4638 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3634 -1.0277 -0.0005 30 1 1.8933 -0.5138 -0.8900 31 1 1.8932 -0.5139 0.8899 32 1 1.6766 1.9563 0.8900 33 1 1.6766 1.9563 -0.8899 34 1 3.7836 -0.1676 -1.4158 35 1 3.7215 1.4528 -2.1495 36 1 5.1953 0.9115 -1.3111 37 1 3.9446 -0.2613 1.3318 38 1 6.4035 2.6919 3.4859 39 1 7.5827 4.6024 4.4914 40 1 7.3244 6.8544 3.5357 41 1 6.6727 11.6870 2.0537 42 1 4.6945 5.2876 0.5508 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000278234827.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:55:42 Heat of formation + Delta-G solvation = -35.756724 kcal Electronic energy + Delta-G solvation = -26812.843085 eV Core-core repulsion = 22953.113832 eV Total energy + Delta-G solvation = -3859.729254 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -42.96624 -39.20700 -38.84595 -37.67653 -36.50509 -35.42815 -33.75107 -32.38410 -31.03879 -29.95556 -28.89678 -27.37854 -25.38142 -24.98810 -23.46266 -22.61076 -21.59613 -20.50146 -20.28347 -18.44757 -17.56166 -17.41496 -17.02072 -16.32621 -15.90623 -15.64872 -15.57038 -15.16308 -14.75564 -14.40096 -14.32153 -13.99981 -13.85659 -13.75231 -13.40852 -13.04216 -12.87276 -12.67884 -12.43009 -12.30774 -12.28450 -12.03705 -11.78344 -11.71056 -11.55930 -11.18633 -11.07165 -10.93992 -10.34874 -10.30691 -10.18923 -9.76971 -9.72992 -9.34842 -8.87124 -8.02762 -7.37305 -6.41497 -4.08662 1.41148 1.83223 2.05530 2.21101 2.84403 3.06998 3.24376 3.28230 3.44482 3.61911 4.04997 4.25122 4.25739 4.47088 4.58434 4.62108 4.75160 4.92054 5.00158 5.09556 5.16411 5.20196 5.24211 5.33654 5.39305 5.45469 5.55796 5.61685 5.67027 5.74172 5.83911 5.94304 6.04077 6.19112 6.32701 6.54507 6.60111 6.81449 7.12325 7.21227 7.25969 7.34038 7.56110 7.78720 7.99592 8.04170 8.93553 9.54992 10.65792 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.017064 B = 0.003597 C = 0.003129 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1640.534969 B = 7782.465471 C = 8946.927337 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.122 4.122 3 C -0.115 4.115 4 C 0.123 3.877 5 C -0.147 4.147 6 N -0.719 5.719 7 C 0.705 3.295 8 O -0.527 6.527 9 N -0.512 5.512 10 C 0.160 3.840 11 C -0.215 4.215 12 C -0.061 4.061 13 C -0.222 4.222 14 C 0.174 3.826 15 O -0.212 6.212 16 C -0.390 4.390 17 H 0.108 0.892 18 C 0.065 3.935 19 N -0.878 5.878 20 Si 0.903 3.097 21 H -0.273 1.273 22 H -0.282 1.282 23 H -0.258 1.258 24 C -0.208 4.208 25 C 0.523 3.477 26 O -0.442 6.442 27 H 0.056 0.944 28 H 0.057 0.943 29 H 0.057 0.943 30 H 0.070 0.930 31 H 0.064 0.936 32 H 0.075 0.925 33 H 0.092 0.908 34 H 0.081 0.919 35 H 0.086 0.914 36 H 0.069 0.931 37 H 0.438 0.562 38 H 0.148 0.852 39 H 0.120 0.880 40 H 0.137 0.863 41 H 0.280 0.720 42 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.537 -23.196 -6.082 25.807 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.160 4.160 3 C -0.154 4.154 4 C 0.032 3.968 5 C -0.205 4.205 6 N -0.385 5.385 7 C 0.406 3.594 8 O -0.400 6.400 9 N -0.249 5.249 10 C 0.070 3.930 11 C -0.235 4.235 12 C -0.079 4.079 13 C -0.242 4.242 14 C 0.121 3.879 15 O -0.117 6.117 16 C -0.466 4.466 17 H 0.125 0.875 18 C -0.138 4.138 19 N -0.516 5.516 20 Si 0.728 3.272 21 H -0.198 1.198 22 H -0.207 1.207 23 H -0.182 1.182 24 C -0.229 4.229 25 C 0.309 3.691 26 O -0.309 6.309 27 H 0.075 0.925 28 H 0.076 0.924 29 H 0.076 0.924 30 H 0.088 0.912 31 H 0.083 0.917 32 H 0.094 0.906 33 H 0.110 0.890 34 H 0.100 0.900 35 H 0.104 0.896 36 H 0.088 0.912 37 H 0.283 0.717 38 H 0.166 0.834 39 H 0.138 0.862 40 H 0.155 0.845 41 H 0.090 0.910 42 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -9.381 -22.409 -6.100 25.048 hybrid contribution -0.359 0.001 -0.325 0.484 sum -9.740 -22.408 -6.425 25.264 Atomic orbital electron populations 1.21756 0.95066 1.01929 1.02286 1.21527 0.96619 0.95413 1.02423 1.21869 0.89872 0.99030 1.04632 1.21517 0.96918 0.88899 0.89427 1.22023 1.02262 1.02319 0.93918 1.45672 1.55034 1.12410 1.25368 1.15781 0.79936 0.80377 0.83272 1.90897 1.47654 1.78743 1.22754 1.43653 1.46935 1.10109 1.24209 1.17203 0.96225 0.83991 0.95582 1.21195 1.02481 1.01430 0.98371 1.20706 0.97289 0.91693 0.98259 1.21424 1.04633 0.98286 0.99843 1.18679 0.92594 0.85503 0.91163 1.83578 1.67853 1.12314 1.47916 1.20786 1.29185 0.83632 1.12976 0.87456 1.24453 0.97036 0.93795 0.98549 1.69644 1.42590 0.99660 1.39685 0.86209 0.80284 0.78321 0.82345 1.19815 1.20729 1.18168 1.20245 1.07593 0.89148 1.05892 1.20839 0.77775 0.90519 0.79944 1.90771 1.55516 1.36017 1.48604 0.92508 0.92381 0.92439 0.91151 0.91719 0.90592 0.88969 0.90029 0.89561 0.91230 0.71655 0.83433 0.86249 0.84517 0.91007 0.83659 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.76 9.91 37.16 0.37 -0.39 16 2 C -0.12 -0.59 5.52 -26.73 -0.15 -0.74 16 3 C -0.12 -0.84 4.54 -26.73 -0.12 -0.96 16 4 C 0.12 1.10 1.01 -132.09 -0.13 0.97 16 5 C -0.15 -0.97 8.72 37.16 0.32 -0.65 16 6 N -0.72 -6.49 5.41 -52.93 -0.29 -6.77 16 7 C 0.71 9.92 8.54 -88.02 -0.75 9.17 16 8 O -0.53 -8.77 14.66 5.33 0.08 -8.70 16 9 N -0.51 -8.22 2.83 -64.37 -0.18 -8.40 16 10 C 0.16 3.11 6.56 -83.62 -0.55 2.57 16 11 C -0.21 -4.09 9.26 -39.35 -0.36 -4.45 16 12 C -0.06 -1.16 10.03 -39.64 -0.40 -1.55 16 13 C -0.22 -4.91 9.17 -39.36 -0.36 -5.27 16 14 C 0.17 4.18 6.64 -39.13 -0.26 3.92 16 15 O -0.21 -5.75 8.58 0.06 0.00 -5.75 16 16 C -0.39 -11.12 9.95 30.89 0.31 -10.81 16 17 H 0.11 3.09 5.43 -52.49 -0.29 2.81 16 18 C 0.07 1.85 5.49 -17.51 -0.10 1.75 16 19 N -0.88 -25.51 13.96 55.48 0.77 -24.73 16 20 Si 0.90 22.05 28.62 -169.99 -4.86 17.19 16 21 H -0.27 -6.54 7.11 56.52 0.40 -6.14 16 22 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 23 H -0.26 -6.39 7.11 56.52 0.40 -5.99 16 24 C -0.21 -4.55 9.26 -39.22 -0.36 -4.91 16 25 C 0.52 7.46 6.85 -10.55 -0.07 7.39 16 26 O -0.44 -7.52 15.06 5.59 0.08 -7.43 16 27 H 0.06 0.32 8.14 -51.93 -0.42 -0.11 16 28 H 0.06 0.28 8.14 -51.93 -0.42 -0.14 16 29 H 0.06 0.25 8.14 -51.93 -0.42 -0.18 16 30 H 0.07 0.26 6.75 -51.93 -0.35 -0.09 16 31 H 0.06 0.29 7.04 -51.93 -0.37 -0.08 16 32 H 0.08 0.65 8.13 -51.93 -0.42 0.22 16 33 H 0.09 0.64 8.14 -51.93 -0.42 0.21 16 34 H 0.08 0.33 6.81 -51.93 -0.35 -0.03 16 35 H 0.09 0.55 8.14 -51.93 -0.42 0.13 16 36 H 0.07 0.53 8.14 -51.93 -0.42 0.10 16 37 H 0.44 2.63 8.12 -40.82 -0.33 2.30 16 38 H 0.15 2.73 5.18 -52.49 -0.27 2.45 16 39 H 0.12 1.91 8.06 -52.49 -0.42 1.49 16 40 H 0.14 3.10 5.63 -52.49 -0.30 2.80 16 41 H 0.28 7.50 8.31 -40.82 -0.34 7.16 16 42 H 0.15 3.22 5.36 -52.49 -0.28 2.94 16 LS Contribution 345.56 15.07 5.21 5.21 Total: -1.00 -32.80 345.56 -6.86 -39.66 By element: Atomic # 1 Polarization: 8.75 SS G_CDS: -5.05 Total: 3.69 kcal Atomic # 6 Polarization: -1.35 SS G_CDS: -2.62 Total: -3.96 kcal Atomic # 7 Polarization: -40.21 SS G_CDS: 0.31 Total: -39.90 kcal Atomic # 8 Polarization: -22.04 SS G_CDS: 0.16 Total: -21.88 kcal Atomic # 14 Polarization: 22.05 SS G_CDS: -4.86 Total: 17.19 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -32.80 -6.86 -39.66 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000278234827.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.899 kcal (2) G-P(sol) polarization free energy of solvation -32.800 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.901 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.856 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.656 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.757 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds