Wall clock time and date at job start Tue Mar 31 2020 13:55:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52998 * 109.47077 * 2 1 4 4 C 1.53004 * 109.47010 * 180.02562 * 3 2 1 5 5 C 1.53002 * 110.53736 * 66.37543 * 4 3 2 6 6 N 1.47317 * 110.59639 * 303.54849 * 4 3 2 7 7 C 1.34527 * 106.61770 * 241.47385 * 6 4 3 8 8 O 1.21536 * 123.77117 * 180.02562 * 7 6 4 9 9 N 1.33795 * 112.46183 * 359.97438 * 7 6 4 10 10 C 1.40197 * 124.18323 * 179.97438 * 9 7 6 11 11 C 1.38918 * 120.02700 * 6.12554 * 10 9 7 12 12 C 1.38171 * 120.06871 * 179.70590 * 11 10 9 13 13 C 1.38156 * 120.13713 * 0.27710 * 12 11 10 14 14 C 1.38909 * 120.06223 * 0.02562 * 13 12 11 15 15 O 1.35750 * 120.03904 * 179.97438 * 14 13 12 16 16 C 1.34828 * 116.99672 * 354.56091 * 15 14 13 17 17 H 1.07996 * 120.00559 * 5.04870 * 16 15 14 18 18 C 1.38661 * 119.99752 * 185.04595 * 16 15 14 19 19 N 1.31554 * 119.99985 * 179.97438 * 18 16 15 20 20 Si 1.86804 * 119.99761 * 0.02562 * 18 16 15 21 21 H 1.48502 * 109.47030 * 90.00331 * 20 18 16 22 22 H 1.48495 * 109.46916 * 209.99877 * 20 18 16 23 23 H 1.48496 * 109.47362 * 329.99888 * 20 18 16 24 24 C 1.38668 * 120.03319 * 186.40865 * 10 9 7 25 25 C 1.34773 * 111.64072 * 0.23653 * 9 7 6 26 26 O 1.21238 * 127.15765 * 179.73747 * 25 9 7 27 27 H 1.09000 * 109.46939 * 299.99779 * 1 2 3 28 28 H 1.09005 * 109.47029 * 59.99529 * 1 2 3 29 29 H 1.09002 * 109.47356 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.46939 * 240.00221 * 2 1 3 31 31 H 1.08996 * 109.46873 * 120.00671 * 2 1 3 32 32 H 1.09000 * 109.47055 * 60.00292 * 3 2 1 33 33 H 1.08991 * 109.47352 * 300.00033 * 3 2 1 34 34 H 1.08995 * 109.47136 * 297.87581 * 5 4 3 35 35 H 1.08999 * 109.46796 * 57.87221 * 5 4 3 36 36 H 1.09001 * 109.47181 * 177.86868 * 5 4 3 37 37 H 0.96993 * 126.69106 * 61.44344 * 6 4 3 38 38 H 1.08000 * 119.96582 * 359.97438 * 11 10 9 39 39 H 1.07999 * 119.93015 * 180.29906 * 12 11 10 40 40 H 1.07999 * 119.97048 * 180.02562 * 13 12 11 41 41 H 0.97002 * 119.99991 * 179.97438 * 19 18 16 42 42 H 1.07997 * 120.06889 * 359.97438 * 24 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5700 1.4425 -0.0006 5 6 4.1062 0.8685 -1.3137 6 7 4.0887 0.6802 1.1483 7 6 4.8006 1.5446 1.8937 8 8 5.3702 1.2394 2.9230 9 7 4.8125 2.7778 1.3748 10 6 5.4790 3.8684 1.9509 11 6 6.2883 3.6795 3.0641 12 6 6.9503 4.7527 3.6289 13 6 6.8054 6.0175 3.0923 14 6 5.9926 6.2138 1.9831 15 8 5.8501 7.4569 1.4566 16 6 6.4326 8.4742 2.1227 17 1 7.0495 8.2717 2.9856 18 6 6.2395 9.7805 1.6996 19 7 6.8075 10.7732 2.3498 20 14 5.1719 10.1309 0.2074 21 1 3.7648 10.3259 0.6402 22 1 5.6562 11.3604 -0.4701 23 1 5.2459 8.9851 -0.7343 24 6 5.3264 5.1376 1.4136 25 6 4.1000 2.8434 0.2327 26 8 3.9211 3.8194 -0.4638 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3634 -1.0277 -0.0005 30 1 1.8933 -0.5138 -0.8900 31 1 1.8932 -0.5139 0.8899 32 1 1.6766 1.9563 0.8900 33 1 1.6766 1.9563 -0.8899 34 1 3.7836 -0.1676 -1.4158 35 1 3.7215 1.4528 -2.1495 36 1 5.1953 0.9115 -1.3111 37 1 3.9446 -0.2613 1.3318 38 1 6.4035 2.6919 3.4859 39 1 7.5827 4.6024 4.4914 40 1 7.3244 6.8544 3.5357 41 1 6.6727 11.6870 2.0537 42 1 4.6945 5.2876 0.5508 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000278234827.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:55:41 Heat of formation + Delta-G solvation = -57.232355 kcal Electronic energy + Delta-G solvation = -26813.774338 eV Core-core repulsion = 22953.113832 eV Total energy + Delta-G solvation = -3860.660507 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -44.09133 -40.95842 -40.03949 -38.98674 -37.88599 -36.59648 -34.65897 -34.43758 -31.74480 -31.61687 -30.51918 -27.90540 -27.37796 -26.08286 -24.77939 -23.85608 -22.68142 -21.72069 -21.42315 -20.05056 -19.25640 -18.83340 -18.13844 -17.53990 -17.10629 -16.99410 -16.76927 -16.36831 -16.11296 -15.83482 -15.70570 -15.49276 -15.37677 -14.72708 -14.50271 -14.35161 -14.28438 -13.92855 -13.63957 -13.53946 -13.24478 -13.19709 -12.92306 -12.81521 -12.74752 -12.35773 -12.17240 -12.03360 -11.85260 -11.68591 -11.48227 -11.34020 -10.94309 -10.91261 -10.63963 -9.68427 -9.14781 -8.53591 -6.26976 0.07410 0.41328 0.51563 0.89558 1.28925 1.32317 1.49976 1.82995 1.94419 2.25608 2.61712 2.69509 2.94223 3.05579 3.36792 3.59937 3.88203 4.00165 4.01925 4.14329 4.17121 4.25635 4.33635 4.49341 4.55449 4.62452 4.69149 4.73341 4.77635 4.88558 4.98674 5.05631 5.10013 5.19958 5.26711 5.30832 5.34289 5.47472 5.53003 5.66184 5.75251 5.80047 5.93486 6.04571 6.21731 6.80195 6.94476 7.51227 8.57460 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.017064 B = 0.003597 C = 0.003129 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1640.534969 B = 7782.465471 C = 8946.927337 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.117 4.117 3 C -0.113 4.113 4 C 0.139 3.861 5 C -0.145 4.145 6 N -0.687 5.687 7 C 0.702 3.298 8 O -0.554 6.554 9 N -0.524 5.524 10 C 0.166 3.834 11 C -0.201 4.201 12 C -0.049 4.049 13 C -0.233 4.233 14 C 0.145 3.855 15 O -0.239 6.239 16 C -0.402 4.402 17 H 0.089 0.911 18 C 0.017 3.983 19 N -0.917 5.917 20 Si 0.963 3.037 21 H -0.265 1.265 22 H -0.262 1.262 23 H -0.268 1.268 24 C -0.215 4.215 25 C 0.511 3.489 26 O -0.475 6.475 27 H 0.045 0.955 28 H 0.057 0.943 29 H 0.067 0.933 30 H 0.093 0.907 31 H 0.072 0.928 32 H 0.059 0.941 33 H 0.097 0.903 34 H 0.120 0.880 35 H 0.091 0.909 36 H 0.060 0.940 37 H 0.457 0.543 38 H 0.164 0.836 39 H 0.157 0.843 40 H 0.124 0.876 41 H 0.286 0.714 42 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.812 -26.870 -7.125 29.827 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.154 4.154 3 C -0.152 4.152 4 C 0.049 3.951 5 C -0.203 4.203 6 N -0.354 5.354 7 C 0.403 3.597 8 O -0.429 6.429 9 N -0.261 5.261 10 C 0.074 3.926 11 C -0.220 4.220 12 C -0.067 4.067 13 C -0.253 4.253 14 C 0.094 3.906 15 O -0.146 6.146 16 C -0.478 4.478 17 H 0.107 0.893 18 C -0.182 4.182 19 N -0.557 5.557 20 Si 0.786 3.214 21 H -0.190 1.190 22 H -0.186 1.186 23 H -0.193 1.193 24 C -0.236 4.236 25 C 0.300 3.700 26 O -0.344 6.344 27 H 0.064 0.936 28 H 0.076 0.924 29 H 0.086 0.914 30 H 0.111 0.889 31 H 0.091 0.909 32 H 0.078 0.922 33 H 0.116 0.884 34 H 0.138 0.862 35 H 0.110 0.890 36 H 0.080 0.920 37 H 0.307 0.693 38 H 0.181 0.819 39 H 0.175 0.825 40 H 0.142 0.858 41 H 0.096 0.904 42 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -10.687 -26.175 -7.156 29.165 hybrid contribution 0.016 0.838 0.065 0.840 sum -10.672 -25.338 -7.091 28.393 Atomic orbital electron populations 1.21770 0.95193 1.02471 1.01819 1.21543 0.96440 0.93489 1.03937 1.21928 0.88000 1.01005 1.04248 1.21639 0.97944 0.85151 0.90384 1.22122 1.01746 1.04417 0.92025 1.45528 1.53036 1.12620 1.24190 1.15871 0.80352 0.80168 0.83324 1.90865 1.49112 1.78958 1.24006 1.43890 1.47130 1.10079 1.25023 1.17300 0.95661 0.84376 0.95224 1.21519 1.01030 1.01975 0.97513 1.21080 0.96801 0.90149 0.98687 1.21460 1.04730 0.99382 0.99736 1.19123 0.93924 0.85072 0.92465 1.83530 1.69236 1.13046 1.48796 1.20776 1.29488 0.84645 1.12929 0.89310 1.25193 0.98309 0.93506 1.01232 1.69709 1.44312 1.00207 1.41440 0.85328 0.78948 0.78246 0.78905 1.19032 1.18638 1.19301 1.20268 1.07662 0.89762 1.05941 1.21891 0.76856 0.92428 0.78812 1.90748 1.56487 1.37861 1.49347 0.93591 0.92362 0.91383 0.88886 0.90888 0.92176 0.88438 0.86205 0.89049 0.92044 0.69329 0.81866 0.82503 0.85785 0.90386 0.84356 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.08 9.91 71.98 0.71 -0.37 16 2 C -0.12 -0.66 5.52 30.59 0.17 -0.49 16 3 C -0.11 -1.32 4.54 30.59 0.14 -1.18 16 4 C 0.14 2.10 1.01 2.99 0.00 2.11 16 5 C -0.15 -1.37 8.72 71.98 0.63 -0.74 16 6 N -0.69 -10.10 5.41 -439.79 -2.38 -12.48 16 7 C 0.70 18.20 8.54 179.44 1.53 19.74 16 8 O -0.55 -17.15 14.66 -3.83 -0.06 -17.21 16 9 N -0.52 -16.26 2.83 -594.79 -1.68 -17.95 16 10 C 0.17 6.41 6.56 38.07 0.25 6.66 16 11 C -0.20 -7.35 9.26 22.42 0.21 -7.14 16 12 C -0.05 -1.81 10.03 22.23 0.22 -1.58 16 13 C -0.23 -10.60 9.17 22.41 0.21 -10.40 16 14 C 0.14 7.25 6.64 22.56 0.15 7.40 16 15 O -0.24 -13.61 8.58 -22.71 -0.19 -13.81 16 16 C -0.40 -24.10 9.95 67.92 0.68 -23.43 16 17 H 0.09 5.46 5.43 -2.91 -0.02 5.45 16 18 C 0.02 0.99 5.49 84.84 0.47 1.46 16 19 N -0.92 -54.96 13.96 21.61 0.30 -54.66 16 20 Si 0.96 46.66 28.62 68.60 1.96 48.62 16 21 H -0.27 -12.39 7.11 99.48 0.71 -11.68 16 22 H -0.26 -11.69 7.11 99.48 0.71 -10.99 16 23 H -0.27 -13.31 7.11 99.48 0.71 -12.60 16 24 C -0.22 -9.67 9.26 22.50 0.21 -9.47 16 25 C 0.51 14.10 6.85 87.94 0.60 14.70 16 26 O -0.47 -16.27 15.06 -2.90 -0.04 -16.31 16 27 H 0.04 0.42 8.14 -2.39 -0.02 0.40 16 28 H 0.06 0.41 8.14 -2.38 -0.02 0.39 16 29 H 0.07 0.35 8.14 -2.39 -0.02 0.33 16 30 H 0.09 0.16 6.75 -2.39 -0.02 0.14 16 31 H 0.07 0.32 7.04 -2.39 -0.02 0.30 16 32 H 0.06 0.92 8.13 -2.39 -0.02 0.90 16 33 H 0.10 1.09 8.14 -2.39 -0.02 1.07 16 34 H 0.12 0.27 6.81 -2.39 -0.02 0.25 16 35 H 0.09 0.86 8.14 -2.39 -0.02 0.84 16 36 H 0.06 0.73 8.14 -2.39 -0.02 0.71 16 37 H 0.46 3.47 8.12 -92.71 -0.75 2.72 16 38 H 0.16 5.64 5.18 -2.91 -0.02 5.62 16 39 H 0.16 4.61 8.06 -2.91 -0.02 4.59 16 40 H 0.12 5.93 5.63 -2.91 -0.02 5.92 16 41 H 0.29 15.72 8.31 -92.71 -0.77 14.95 16 42 H 0.14 6.39 5.36 -2.91 -0.02 6.38 16 Total: -1.00 -75.26 345.56 4.40 -70.85 By element: Atomic # 1 Polarization: 15.36 SS G_CDS: 0.33 Total: 15.68 kcal Atomic # 6 Polarization: -8.91 SS G_CDS: 6.17 Total: -2.74 kcal Atomic # 7 Polarization: -81.33 SS G_CDS: -3.76 Total: -85.09 kcal Atomic # 8 Polarization: -47.03 SS G_CDS: -0.29 Total: -47.33 kcal Atomic # 14 Polarization: 46.66 SS G_CDS: 1.96 Total: 48.62 kcal Total: -75.26 4.40 -70.85 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000278234827.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.620 kcal (2) G-P(sol) polarization free energy of solvation -75.257 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.637 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.404 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.853 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.232 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds