Wall clock time and date at job start Tue Mar 31 2020 12:13:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31554 * 1 3 3 Si 1.86795 * 120.00169 * 2 1 4 4 H 1.48495 * 109.47457 * 270.00585 * 3 2 1 5 5 H 1.48500 * 109.47229 * 30.00747 * 3 2 1 6 6 H 1.48499 * 109.46948 * 150.00386 * 3 2 1 7 7 C 1.38653 * 119.99965 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99602 * 359.97438 * 7 2 1 9 9 O 1.34830 * 120.00220 * 179.97438 * 7 2 1 10 10 C 1.35752 * 117.00062 * 185.45631 * 9 7 2 11 11 C 1.38955 * 120.03099 * 185.78124 * 10 9 7 12 12 C 1.38125 * 120.06910 * 179.70133 * 11 10 9 13 13 C 1.38201 * 120.13832 * 0.27817 * 12 11 10 14 14 C 1.38919 * 120.06869 * 359.97438 * 13 12 11 15 15 N 1.39929 * 120.03775 * 179.97438 * 14 13 12 16 16 C 1.34777 * 119.99791 * 325.47308 * 15 14 13 17 17 O 1.21287 * 119.99731 * 354.78961 * 16 15 14 18 18 C 1.50698 * 119.99875 * 174.78553 * 16 15 14 19 19 H 1.09003 * 109.59946 * 95.52400 * 18 16 15 20 20 C 1.52987 * 109.60368 * 216.01568 * 18 16 15 21 21 C 1.51801 * 110.88971 * 33.31292 * 20 18 16 22 22 C 1.51787 * 113.82742 * 66.96002 * 21 20 18 23 23 C 1.53060 * 110.74779 * 293.22206 * 22 21 20 24 24 C 1.51425 * 108.49522 * 84.91263 * 23 22 21 25 25 O 1.21283 * 119.88674 * 108.75157 * 24 23 22 26 26 N 1.33369 * 120.21944 * 288.76686 * 24 23 22 27 27 C 1.38734 * 120.03375 * 6.03600 * 10 9 7 28 28 H 0.97002 * 120.00032 * 359.97438 * 1 2 3 29 29 H 1.07993 * 119.96674 * 359.97438 * 11 10 9 30 30 H 1.07993 * 119.93125 * 180.29988 * 12 11 10 31 31 H 1.08001 * 119.96623 * 180.02562 * 13 12 11 32 32 H 0.96998 * 120.00365 * 145.48264 * 15 14 13 33 33 H 1.09004 * 109.19210 * 153.64885 * 20 18 16 34 34 H 1.08998 * 109.19492 * 272.92572 * 20 18 16 35 35 H 1.09002 * 108.58402 * 305.85358 * 21 20 18 36 36 H 1.09000 * 108.62652 * 188.10313 * 21 20 18 37 37 H 1.08999 * 109.22795 * 172.89505 * 22 21 20 38 38 H 1.09008 * 109.18894 * 53.52385 * 22 21 20 39 39 H 1.09000 * 109.63140 * 325.21036 * 23 22 21 40 40 H 1.09001 * 109.63481 * 204.61865 * 23 22 21 41 41 H 0.96997 * 119.79088 * 179.71434 * 26 24 23 42 42 H 1.07996 * 120.07311 * 0.02562 * 27 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3155 0.0000 0.0000 3 14 2.2496 1.6177 0.0000 4 1 2.4970 2.0465 -1.4000 5 1 1.4471 2.6526 0.7002 6 1 3.5471 1.4400 0.7000 7 6 2.0088 -1.2008 -0.0005 8 1 1.4687 -2.1360 -0.0005 9 8 3.3571 -1.2008 -0.0011 10 6 3.9733 -2.4049 -0.1166 11 6 5.3555 -2.4924 -0.0038 12 6 5.9828 -3.7180 -0.1150 13 6 5.2389 -4.8599 -0.3445 14 6 3.8572 -4.7783 -0.4635 15 7 3.1047 -5.9348 -0.6964 16 6 3.6097 -6.9253 -1.4583 17 8 4.6747 -6.7760 -2.0191 18 6 2.8511 -8.2181 -1.6133 19 1 2.2554 -8.1854 -2.5255 20 6 3.8364 -9.3864 -1.6813 21 6 5.0568 -9.1161 -0.8199 22 6 4.7601 -9.0744 0.6681 23 6 3.8807 -7.8698 1.0121 24 6 2.4330 -8.2518 0.7862 25 8 1.6948 -8.4108 1.7352 26 7 1.9671 -8.4142 -0.4529 27 6 3.2242 -3.5485 -0.3527 28 1 -0.4850 0.8401 0.0004 29 1 5.9395 -1.6019 0.1755 30 1 7.0567 -3.7841 -0.0221 31 1 5.7322 -5.8168 -0.4306 32 1 2.2196 -6.0237 -0.3096 33 1 3.3431 -10.2923 -1.3288 34 1 4.1515 -9.5298 -2.7148 35 1 5.4859 -8.1588 -1.1161 36 1 5.7942 -9.8969 -1.0060 37 1 5.6978 -9.0032 1.2192 38 1 4.2432 -9.9899 0.9561 39 1 4.1425 -7.0297 0.3688 40 1 4.0284 -7.5949 2.0565 41 1 1.0397 -8.6630 -0.5903 42 1 2.1502 -3.4824 -0.4452 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000279107084.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:13:08 Heat of formation + Delta-G solvation = -44.731612 kcal Electronic energy + Delta-G solvation = -27468.899866 eV Core-core repulsion = 23608.781432 eV Total energy + Delta-G solvation = -3860.118434 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.99640 -39.55991 -38.85614 -37.05591 -36.18721 -34.84189 -34.09179 -32.40922 -31.29409 -29.70715 -29.00061 -27.13839 -25.33046 -24.74231 -23.03211 -21.92821 -21.07170 -20.44249 -19.66950 -18.17570 -17.91360 -17.80471 -17.68124 -16.10056 -15.91625 -15.56213 -15.17899 -15.13805 -14.68149 -14.39161 -14.14721 -14.01736 -13.92055 -13.74884 -13.46363 -13.20562 -12.92845 -12.83072 -12.39742 -12.23221 -11.99559 -11.63420 -11.42864 -11.19888 -11.07728 -10.95030 -10.84970 -10.82770 -10.32703 -10.07105 -9.96909 -9.73466 -9.58551 -9.35195 -8.90980 -7.90968 -7.40963 -6.47410 -4.15042 1.68110 2.15126 2.38309 2.45689 2.86685 2.99436 3.19228 3.23091 3.37300 4.19088 4.20299 4.21508 4.38393 4.39751 4.56098 4.70304 4.79271 4.85594 4.98162 5.03001 5.24299 5.39543 5.45990 5.51177 5.67248 5.70876 5.77897 5.81580 5.85279 5.90473 6.00072 6.08169 6.23617 6.37723 6.44889 6.71664 6.73570 6.87355 7.07656 7.09185 7.38129 7.52137 7.69299 7.92727 7.96096 7.99343 8.87612 9.48463 10.60062 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.019599 B = 0.003661 C = 0.003377 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1428.307092 B = 7646.594856 C = 8289.012225 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.878 5.878 2 C 0.065 3.935 3 Si 0.906 3.094 4 H -0.273 1.273 5 H -0.282 1.282 6 H -0.258 1.258 7 C -0.391 4.391 8 H 0.105 0.895 9 O -0.213 6.213 10 C 0.174 3.826 11 C -0.197 4.197 12 C -0.063 4.063 13 C -0.200 4.200 14 C 0.174 3.826 15 N -0.670 5.670 16 C 0.510 3.490 17 O -0.501 6.501 18 C 0.124 3.876 19 H 0.130 0.870 20 C -0.115 4.115 21 C -0.157 4.157 22 C -0.108 4.108 23 C -0.182 4.182 24 C 0.521 3.479 25 O -0.539 6.539 26 N -0.726 5.726 27 C -0.240 4.240 28 H 0.280 0.720 29 H 0.119 0.881 30 H 0.119 0.881 31 H 0.120 0.880 32 H 0.410 0.590 33 H 0.078 0.922 34 H 0.087 0.913 35 H 0.101 0.899 36 H 0.068 0.932 37 H 0.077 0.923 38 H 0.062 0.938 39 H 0.121 0.879 40 H 0.100 0.900 41 H 0.406 0.594 42 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.779 -17.940 -3.327 19.835 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.515 5.515 2 C -0.139 4.139 3 Si 0.731 3.269 4 H -0.199 1.199 5 H -0.207 1.207 6 H -0.182 1.182 7 C -0.467 4.467 8 H 0.122 0.878 9 O -0.118 6.118 10 C 0.121 3.879 11 C -0.216 4.216 12 C -0.082 4.082 13 C -0.221 4.221 14 C 0.081 3.919 15 N -0.316 5.316 16 C 0.297 3.703 17 O -0.375 6.375 18 C 0.016 3.984 19 H 0.148 0.852 20 C -0.154 4.154 21 C -0.193 4.193 22 C -0.146 4.146 23 C -0.222 4.222 24 C 0.308 3.692 25 O -0.415 6.415 26 N -0.382 5.382 27 C -0.262 4.262 28 H 0.090 0.910 29 H 0.137 0.863 30 H 0.137 0.863 31 H 0.138 0.862 32 H 0.247 0.753 33 H 0.097 0.903 34 H 0.105 0.895 35 H 0.119 0.881 36 H 0.087 0.913 37 H 0.095 0.905 38 H 0.080 0.920 39 H 0.139 0.861 40 H 0.118 0.882 41 H 0.244 0.756 42 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges 8.222 -17.531 -3.168 19.620 hybrid contribution -0.919 0.496 -0.006 1.045 sum 7.302 -17.034 -3.175 18.803 Atomic orbital electron populations 1.69642 1.05601 1.28604 1.47663 1.24468 0.95028 0.98901 0.95497 0.86174 0.80381 0.81332 0.79000 1.19867 1.20730 1.18241 1.20722 0.76834 0.96567 1.52568 0.87806 1.83616 1.22632 1.25344 1.80176 1.18821 0.91411 0.85123 0.92514 1.20271 0.91847 0.98259 1.11253 1.20520 0.98717 0.91379 0.97539 1.20537 0.91827 0.99035 1.10655 1.17403 0.90878 0.84633 0.98975 1.43897 1.20612 1.16851 1.50220 1.20554 0.86576 0.85107 0.78020 1.90703 1.21172 1.80424 1.45246 1.21613 0.93040 0.93001 0.90786 0.85243 1.21569 0.95721 0.96032 1.02036 1.21658 0.97976 1.05723 0.93990 1.21186 0.99782 0.96942 0.96724 1.22869 0.91194 1.01799 1.06373 1.20725 0.90704 0.75545 0.82207 1.90776 1.59410 1.50573 1.40783 1.46051 1.14568 1.71986 1.05579 1.20954 1.01425 0.90655 1.13129 0.90977 0.86255 0.86272 0.86169 0.75346 0.90312 0.89494 0.88125 0.91343 0.90482 0.91975 0.86117 0.88188 0.75613 0.84628 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -24.91 13.96 55.48 0.77 -24.14 16 2 C 0.06 1.78 5.49 -17.52 -0.10 1.69 16 3 Si 0.91 21.30 28.62 -169.99 -4.86 16.44 16 4 H -0.27 -6.32 7.11 56.52 0.40 -5.92 16 5 H -0.28 -6.40 7.11 56.52 0.40 -5.99 16 6 H -0.26 -6.08 7.11 56.52 0.40 -5.68 16 7 C -0.39 -10.77 9.90 30.89 0.31 -10.46 16 8 H 0.10 2.91 5.53 -52.49 -0.29 2.62 16 9 O -0.21 -5.47 8.58 0.04 0.00 -5.47 16 10 C 0.17 3.89 6.64 -39.13 -0.26 3.63 16 11 C -0.20 -3.75 9.99 -39.36 -0.39 -4.15 16 12 C -0.06 -1.04 10.03 -39.64 -0.40 -1.43 16 13 C -0.20 -3.34 8.07 -39.34 -0.32 -3.65 16 14 C 0.17 3.04 5.99 -83.72 -0.50 2.54 16 15 N -0.67 -9.39 3.38 -9.88 -0.03 -9.43 16 16 C 0.51 6.26 4.04 -10.99 -0.04 6.22 16 17 O -0.50 -7.31 11.85 5.55 0.07 -7.24 16 18 C 0.12 1.03 3.80 -68.71 -0.26 0.76 16 19 H 0.13 0.72 8.14 -51.93 -0.42 0.30 16 20 C -0.11 -0.84 5.34 -27.35 -0.15 -0.99 16 21 C -0.16 -1.38 5.16 -27.96 -0.14 -1.53 16 22 C -0.11 -1.02 5.67 -27.32 -0.15 -1.18 16 23 C -0.18 -2.13 5.34 -27.50 -0.15 -2.28 16 24 C 0.52 6.46 5.71 -11.25 -0.06 6.40 16 25 O -0.54 -8.83 17.92 5.56 0.10 -8.73 16 26 N -0.73 -6.48 4.58 -54.57 -0.25 -6.73 16 27 C -0.24 -4.97 9.05 -39.21 -0.35 -5.33 16 28 H 0.28 7.35 8.31 -40.82 -0.34 7.01 16 29 H 0.12 2.10 8.06 -52.49 -0.42 1.68 16 30 H 0.12 1.58 8.06 -52.49 -0.42 1.16 16 31 H 0.12 1.86 6.07 -52.49 -0.32 1.54 16 32 H 0.41 5.40 7.29 -40.82 -0.30 5.10 16 33 H 0.08 0.51 8.05 -51.93 -0.42 0.09 16 34 H 0.09 0.55 8.14 -51.93 -0.42 0.13 16 35 H 0.10 1.12 4.77 -51.93 -0.25 0.87 16 36 H 0.07 0.52 8.14 -51.93 -0.42 0.09 16 37 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 38 H 0.06 0.57 7.86 -51.92 -0.41 0.16 16 39 H 0.12 1.53 1.94 -51.93 -0.10 1.43 16 40 H 0.10 1.23 8.13 -51.93 -0.42 0.80 16 41 H 0.41 2.93 8.91 -40.82 -0.36 2.57 16 42 H 0.14 2.95 5.72 -52.49 -0.30 2.65 16 LS Contribution 331.68 15.07 5.00 5.00 Total: -1.00 -32.18 331.68 -7.02 -39.20 By element: Atomic # 1 Polarization: 15.69 SS G_CDS: -4.84 Total: 10.86 kcal Atomic # 6 Polarization: -6.78 SS G_CDS: -2.98 Total: -9.76 kcal Atomic # 7 Polarization: -40.78 SS G_CDS: 0.49 Total: -40.29 kcal Atomic # 8 Polarization: -21.61 SS G_CDS: 0.17 Total: -21.44 kcal Atomic # 14 Polarization: 21.30 SS G_CDS: -4.86 Total: 16.44 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -32.18 -7.02 -39.20 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000279107084.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.531 kcal (2) G-P(sol) polarization free energy of solvation -32.178 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.708 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.023 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.201 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.732 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds