Wall clock time and date at job start Tue Mar 31 2020 12:13:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31554 * 1 3 3 Si 1.86795 * 120.00169 * 2 1 4 4 H 1.48495 * 109.47457 * 270.00585 * 3 2 1 5 5 H 1.48500 * 109.47229 * 30.00747 * 3 2 1 6 6 H 1.48499 * 109.46948 * 150.00386 * 3 2 1 7 7 C 1.38653 * 119.99965 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99602 * 359.97438 * 7 2 1 9 9 O 1.34830 * 120.00220 * 179.97438 * 7 2 1 10 10 C 1.35752 * 117.00062 * 185.45631 * 9 7 2 11 11 C 1.38955 * 120.03099 * 185.78124 * 10 9 7 12 12 C 1.38125 * 120.06910 * 179.70133 * 11 10 9 13 13 C 1.38201 * 120.13832 * 0.27817 * 12 11 10 14 14 C 1.38919 * 120.06869 * 359.97438 * 13 12 11 15 15 N 1.39929 * 120.03775 * 179.97438 * 14 13 12 16 16 C 1.34777 * 119.99791 * 325.47308 * 15 14 13 17 17 O 1.21287 * 119.99731 * 354.78961 * 16 15 14 18 18 C 1.50698 * 119.99875 * 174.78553 * 16 15 14 19 19 H 1.09003 * 109.59946 * 95.52400 * 18 16 15 20 20 C 1.52987 * 109.60368 * 216.01568 * 18 16 15 21 21 C 1.51801 * 110.88971 * 33.31292 * 20 18 16 22 22 C 1.51787 * 113.82742 * 66.96002 * 21 20 18 23 23 C 1.53060 * 110.74779 * 293.22206 * 22 21 20 24 24 C 1.51425 * 108.49522 * 84.91263 * 23 22 21 25 25 O 1.21283 * 119.88674 * 108.75157 * 24 23 22 26 26 N 1.33369 * 120.21944 * 288.76686 * 24 23 22 27 27 C 1.38734 * 120.03375 * 6.03600 * 10 9 7 28 28 H 0.97002 * 120.00032 * 359.97438 * 1 2 3 29 29 H 1.07993 * 119.96674 * 359.97438 * 11 10 9 30 30 H 1.07993 * 119.93125 * 180.29988 * 12 11 10 31 31 H 1.08001 * 119.96623 * 180.02562 * 13 12 11 32 32 H 0.96998 * 120.00365 * 145.48264 * 15 14 13 33 33 H 1.09004 * 109.19210 * 153.64885 * 20 18 16 34 34 H 1.08998 * 109.19492 * 272.92572 * 20 18 16 35 35 H 1.09002 * 108.58402 * 305.85358 * 21 20 18 36 36 H 1.09000 * 108.62652 * 188.10313 * 21 20 18 37 37 H 1.08999 * 109.22795 * 172.89505 * 22 21 20 38 38 H 1.09008 * 109.18894 * 53.52385 * 22 21 20 39 39 H 1.09000 * 109.63140 * 325.21036 * 23 22 21 40 40 H 1.09001 * 109.63481 * 204.61865 * 23 22 21 41 41 H 0.96997 * 119.79088 * 179.71434 * 26 24 23 42 42 H 1.07996 * 120.07311 * 0.02562 * 27 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3155 0.0000 0.0000 3 14 2.2496 1.6177 0.0000 4 1 2.4970 2.0465 -1.4000 5 1 1.4471 2.6526 0.7002 6 1 3.5471 1.4400 0.7000 7 6 2.0088 -1.2008 -0.0005 8 1 1.4687 -2.1360 -0.0005 9 8 3.3571 -1.2008 -0.0011 10 6 3.9733 -2.4049 -0.1166 11 6 5.3555 -2.4924 -0.0038 12 6 5.9828 -3.7180 -0.1150 13 6 5.2389 -4.8599 -0.3445 14 6 3.8572 -4.7783 -0.4635 15 7 3.1047 -5.9348 -0.6964 16 6 3.6097 -6.9253 -1.4583 17 8 4.6747 -6.7760 -2.0191 18 6 2.8511 -8.2181 -1.6133 19 1 2.2554 -8.1854 -2.5255 20 6 3.8364 -9.3864 -1.6813 21 6 5.0568 -9.1161 -0.8199 22 6 4.7601 -9.0744 0.6681 23 6 3.8807 -7.8698 1.0121 24 6 2.4330 -8.2518 0.7862 25 8 1.6948 -8.4108 1.7352 26 7 1.9671 -8.4142 -0.4529 27 6 3.2242 -3.5485 -0.3527 28 1 -0.4850 0.8401 0.0004 29 1 5.9395 -1.6019 0.1755 30 1 7.0567 -3.7841 -0.0221 31 1 5.7322 -5.8168 -0.4306 32 1 2.2196 -6.0237 -0.3096 33 1 3.3431 -10.2923 -1.3288 34 1 4.1515 -9.5298 -2.7148 35 1 5.4859 -8.1588 -1.1161 36 1 5.7942 -9.8969 -1.0060 37 1 5.6978 -9.0032 1.2192 38 1 4.2432 -9.9899 0.9561 39 1 4.1425 -7.0297 0.3688 40 1 4.0284 -7.5949 2.0565 41 1 1.0397 -8.6630 -0.5903 42 1 2.1502 -3.4824 -0.4452 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000279107084.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:13:07 Heat of formation + Delta-G solvation = -67.316199 kcal Electronic energy + Delta-G solvation = -27469.879207 eV Core-core repulsion = 23608.781432 eV Total energy + Delta-G solvation = -3861.097775 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -42.99770 -40.96249 -40.17055 -38.49326 -37.22914 -36.02320 -35.00534 -34.41294 -32.14328 -31.16086 -30.51661 -28.06558 -27.22165 -25.59432 -24.14685 -23.47994 -22.26984 -21.31235 -20.83502 -19.78261 -19.42901 -18.87041 -18.66763 -17.44913 -17.16574 -16.74650 -16.47907 -16.31778 -16.04019 -15.71690 -15.51172 -15.26950 -15.16294 -14.81872 -14.73026 -14.50762 -14.20767 -13.98334 -13.72728 -13.67762 -13.23986 -12.85969 -12.77495 -12.55121 -12.49672 -12.14951 -12.04095 -11.83438 -11.61588 -11.51642 -11.16282 -11.01963 -10.89755 -10.81843 -10.29248 -9.41595 -8.97112 -8.51575 -6.24767 0.30475 0.62047 1.31375 1.32327 1.37001 1.39791 1.52348 1.84455 2.11797 2.27563 2.74935 3.06862 3.08445 3.27700 3.35926 3.68764 3.84062 3.95823 4.06857 4.09926 4.25499 4.26890 4.37389 4.46843 4.57472 4.61339 4.68011 4.81464 4.89632 4.95234 5.01387 5.15591 5.21519 5.29266 5.31059 5.38834 5.51169 5.62441 5.69607 5.73157 5.84359 5.94644 6.16494 6.25015 6.82707 6.85147 7.04907 7.55549 8.59813 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.019599 B = 0.003661 C = 0.003377 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1428.307092 B = 7646.594856 C = 8289.012225 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.922 5.922 2 C 0.012 3.988 3 Si 0.970 3.030 4 H -0.266 1.266 5 H -0.268 1.268 6 H -0.260 1.260 7 C -0.399 4.399 8 H 0.079 0.921 9 O -0.239 6.239 10 C 0.139 3.861 11 C -0.199 4.199 12 C -0.050 4.050 13 C -0.186 4.186 14 C 0.179 3.821 15 N -0.672 5.672 16 C 0.510 3.490 17 O -0.519 6.519 18 C 0.131 3.869 19 H 0.168 0.832 20 C -0.113 4.113 21 C -0.156 4.156 22 C -0.104 4.104 23 C -0.183 4.183 24 C 0.521 3.479 25 O -0.586 6.586 26 N -0.709 5.709 27 C -0.257 4.257 28 H 0.285 0.715 29 H 0.134 0.866 30 H 0.164 0.836 31 H 0.141 0.859 32 H 0.412 0.588 33 H 0.095 0.905 34 H 0.106 0.894 35 H 0.080 0.920 36 H 0.086 0.914 37 H 0.085 0.915 38 H 0.066 0.934 39 H 0.113 0.887 40 H 0.087 0.913 41 H 0.418 0.582 42 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.183 -19.976 -4.514 22.871 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.562 5.562 2 C -0.187 4.187 3 Si 0.792 3.208 4 H -0.191 1.191 5 H -0.193 1.193 6 H -0.184 1.184 7 C -0.476 4.476 8 H 0.097 0.903 9 O -0.147 6.147 10 C 0.089 3.911 11 C -0.219 4.219 12 C -0.068 4.068 13 C -0.207 4.207 14 C 0.085 3.915 15 N -0.319 5.319 16 C 0.299 3.701 17 O -0.394 6.394 18 C 0.024 3.976 19 H 0.185 0.815 20 C -0.152 4.152 21 C -0.193 4.193 22 C -0.142 4.142 23 C -0.224 4.224 24 C 0.309 3.691 25 O -0.466 6.466 26 N -0.364 5.364 27 C -0.279 4.279 28 H 0.094 0.906 29 H 0.152 0.848 30 H 0.182 0.818 31 H 0.159 0.841 32 H 0.249 0.751 33 H 0.114 0.886 34 H 0.124 0.876 35 H 0.098 0.902 36 H 0.104 0.896 37 H 0.104 0.896 38 H 0.085 0.915 39 H 0.131 0.869 40 H 0.106 0.894 41 H 0.257 0.743 42 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges 10.643 -19.629 -4.403 22.759 hybrid contribution -1.480 0.809 0.316 1.716 sum 9.163 -18.820 -4.087 21.327 Atomic orbital electron populations 1.69726 1.06930 1.29633 1.49927 1.25267 0.95853 1.02158 0.95393 0.85228 0.78942 0.77387 0.79271 1.19148 1.19309 1.18419 1.20656 0.78062 0.96021 1.52826 0.90299 1.83554 1.21220 1.27070 1.82817 1.19400 0.92967 0.84675 0.94051 1.20584 0.90436 1.00111 1.10760 1.21027 1.00862 0.89914 0.95033 1.20927 0.91343 1.00146 1.08281 1.17473 0.91660 0.84724 0.97670 1.44000 1.20673 1.16303 1.50899 1.21295 0.86487 0.85570 0.76726 1.90698 1.22073 1.80841 1.45773 1.21862 0.93404 0.90921 0.91462 0.81514 1.21642 0.94821 0.95692 1.02998 1.21637 0.99061 1.05193 0.93370 1.21199 0.99618 0.95779 0.97632 1.22851 0.91416 1.02629 1.05459 1.20860 0.90674 0.75000 0.82617 1.90760 1.60445 1.52980 1.42451 1.45938 1.15302 1.70384 1.04823 1.20919 1.00443 0.92027 1.14474 0.90567 0.84788 0.81848 0.84125 0.75075 0.88641 0.87594 0.90167 0.89587 0.89641 0.91549 0.86945 0.89448 0.74293 0.86980 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -54.60 13.96 21.61 0.30 -54.30 16 2 C 0.01 0.69 5.49 84.83 0.47 1.15 16 3 Si 0.97 44.96 28.62 68.60 1.96 46.92 16 4 H -0.27 -11.91 7.11 99.48 0.71 -11.20 16 5 H -0.27 -11.67 7.11 99.48 0.71 -10.97 16 6 H -0.26 -11.96 7.11 99.48 0.71 -11.26 16 7 C -0.40 -23.24 9.90 67.92 0.67 -22.56 16 8 H 0.08 4.81 5.53 -2.91 -0.02 4.79 16 9 O -0.24 -12.78 8.58 -22.76 -0.20 -12.98 16 10 C 0.14 6.37 6.64 22.56 0.15 6.52 16 11 C -0.20 -7.38 9.99 22.41 0.22 -7.16 16 12 C -0.05 -1.50 10.03 22.23 0.22 -1.28 16 13 C -0.19 -5.80 8.07 22.42 0.18 -5.62 16 14 C 0.18 6.19 5.99 38.14 0.23 6.42 16 15 N -0.67 -18.38 3.38 -303.55 -1.03 -19.41 16 16 C 0.51 11.36 4.04 87.66 0.35 11.71 16 17 O -0.52 -13.70 11.85 -3.05 -0.04 -13.74 16 18 C 0.13 1.73 3.80 44.11 0.17 1.89 16 19 H 0.17 1.10 8.14 -2.39 -0.02 1.08 16 20 C -0.11 -1.19 5.34 30.20 0.16 -1.03 16 21 C -0.16 -2.20 5.16 29.80 0.15 -2.05 16 22 C -0.10 -1.71 5.67 30.22 0.17 -1.54 16 23 C -0.18 -4.07 5.34 30.10 0.16 -3.91 16 24 C 0.52 12.42 5.71 88.11 0.50 12.93 16 25 O -0.59 -19.31 17.92 -3.04 -0.05 -19.36 16 26 N -0.71 -11.13 4.58 -445.73 -2.04 -13.17 16 27 C -0.26 -11.08 9.05 22.51 0.20 -10.87 16 28 H 0.28 15.49 8.31 -92.71 -0.77 14.72 16 29 H 0.13 4.51 8.06 -2.91 -0.02 4.48 16 30 H 0.16 3.51 8.06 -2.91 -0.02 3.49 16 31 H 0.14 3.89 6.07 -2.91 -0.02 3.87 16 32 H 0.41 10.90 7.29 -92.71 -0.68 10.23 16 33 H 0.10 0.78 8.05 -2.38 -0.02 0.76 16 34 H 0.11 0.81 8.14 -2.39 -0.02 0.79 16 35 H 0.08 1.53 4.77 -2.39 -0.01 1.52 16 36 H 0.09 0.95 8.14 -2.39 -0.02 0.93 16 37 H 0.08 1.25 8.14 -2.39 -0.02 1.23 16 38 H 0.07 1.05 7.86 -2.38 -0.02 1.03 16 39 H 0.11 2.68 1.94 -2.39 0.00 2.67 16 40 H 0.09 2.14 8.13 -2.39 -0.02 2.12 16 41 H 0.42 5.10 8.91 -92.71 -0.83 4.27 16 42 H 0.11 5.31 5.72 -2.91 -0.02 5.29 16 Total: -1.00 -74.12 331.68 2.53 -71.59 By element: Atomic # 1 Polarization: 30.24 SS G_CDS: -0.40 Total: 29.84 kcal Atomic # 6 Polarization: -19.41 SS G_CDS: 4.02 Total: -15.39 kcal Atomic # 7 Polarization: -84.11 SS G_CDS: -2.77 Total: -86.88 kcal Atomic # 8 Polarization: -45.79 SS G_CDS: -0.29 Total: -46.08 kcal Atomic # 14 Polarization: 44.96 SS G_CDS: 1.96 Total: 46.92 kcal Total: -74.12 2.53 -71.59 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000279107084.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.271 kcal (2) G-P(sol) polarization free energy of solvation -74.118 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.847 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.531 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.587 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.316 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds